Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_04g0019160 OGI:04076470 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr04:27140321-27142185
Gene Symbol -
DNA seq

cagatactgcttgattttgaggatgctatgggagataggatccaggtgtttattgagtgagcatgcctgttttccatttgctggcgcactgcaaaatccaaatgcatggaccttcaaagcggcaccagacttcttcttgttgtgaaaaccagtgaactagtaaaatccaacattgatcatatgacctgaagtcatgaactaatggtttcctagtccctcgatgctacacccaaataatcaatctagatgtgtgcgtagctgcacattgcaataccatgcagagtatttgcccgggattagtctggtagcctttgcttgcccccaaaatcctgaagtcaaatttcgaataaaaagcattctcaggaggtttgaaatgtttgcatgcttctatctgctgatatttacattttttgaagcagtgaacagctcatgcgttgtgatgtacccaggttttattctctacactccggtatgcgatagttcacaatatgacactagcagtgcaaggattactacaagtctacaacttcacaacactatactatacagtgtccaatggttacacctttgccctttggttaccctacgctagcttctgctgccatgctatatcgaagagacccagcaatgcttcctccctgctctccgccgtgcgggccatggcgaaggtctcctcttcttccctctcgctgcctcctctctcctggtcctcatccttcacgatctccgtgctgtccttcatggcatctgtgatcttggcatctgtgatctctgcagctggcgtctccacccgctgtacatcctccacgccgcattcttggccacctgatgcgtcgccgcgtttcgccggagtcgccgcctctccttcgccgtcgacgggagccttgtcgccatgcacggtgttgccaccgccgccgccgtcgtccgccgtgacgacctccaagctctcgagttccttccgagccacgtcgtcggaatgcctccgcgcctcttcctccattgctgatcggtgcaacgacgcggcttccttctcgtcgcaccagatgtccctaaagacggcgccgccgacgccgtcgtcatcgtcctcgtgggctcggtagcggcggcaacgcttggggagaacgaacagccccgcggcgccggcgaggagggcctcgagggcgtcgatcgcgccgtcgagcctggcgggcagggactcgacgaggaggacgaggtcgtcggcgcccctgccgaggaagcgctcggcggccgggaagagcaccgcggcgacgtcctggacgacgaggagctgcctgtccgcgaaggcgagcgccgagaggcacctcagctgcagcgggctcagcaccggggccgccgcgcgggaggcgcccctggccacgcaccccaccgggcaccgcatcgcctccacgcgccggtacgccccgcgcgccatggccaggatggactcgccgcagctgcgcagcagccgcgccctcggcgtctgcatcggcggtatcctcttggtcgtgccttccaaatcctgcaaatcataggcatagcacgcggtattagcagcaatcttaaagtttggagtagattaaccggacgagagaaaccaaagcgtaaaaatcggtgcttatttatctcaccataacgacatgcatctccgacacggcctgattttccatcttacagacgacgacgtcgacgacctgaaaccagcagaaatcagttcagagatgcatactggtcgtcaggatttggagcagggcgcgagaaattacggagctgagggaggcgagagaccgtggcggtgacctcgccgtggtcacccatggtgggttgtctgcagggtggggagtgggactactagcagtggctaggct

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CDS seq

atggaaaatcaggccgtgtcggagatgcatgtcgttatggatttggaaggcacgaccaagaggataccgccgatgcagacgccgagggcgcggctgctgcgcagctgcggcgagtccatcctggccatggcgcgcggggcgtaccggcgcgtggaggcgatgcggtgcccggtggggtgcgtggccaggggcgcctcccgcgcggcggccccggtgctgagcccgctgcagctgaggtgcctctcggcgctcgccttcgcggacaggcagctcctcgtcgtccaggacgtcgccgcggtgctcttcccggccgccgagcgcttcctcggcaggggcgccgacgacctcgtcctcctcgtcgagtccctgcccgccaggctcgacggcgcgatcgacgccctcgaggccctcctcgccggcgccgcggggctgttcgttctccccaagcgttgccgccgctaccgagcccacgaggacgatgacgacggcgtcggcggcgccgtctttagggacatctggtgcgacgagaaggaagccgcgtcgttgcaccgatcagcaatggaggaagaggcgcggaggcattccgacgacgtggctcggaaggaactcgagagcttggaggtcgtcacggcggacgacggcggcggcggtggcaacaccgtgcatggcgacaaggctcccgtcgacggcgaaggagaggcggcgactccggcgaaacgcggcgacgcatcaggtggccaagaatgcggcgtggaggatgtacagcgggtggagacgccagctgcagagatcacagatgccaagatcacagatgccatgaaggacagcacggagatcgtgaaggatgaggaccaggagagaggaggcagcgagagggaagaagaggagaccttcgccatggcccgcacggcggagagcagggaggaagcattgctgggtctcttcgatatagcatggcagcagaagctagcgtag

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Protein seq

MENQAVSEMHVVMDLEGTTKRIPPMQTPRARLLRSCGESILAMARGAYRRVEAMRCPVGCVARGASRAAAPVLSPLQLRCLSALAFADRQLLVVQDVAAVLFPAAERFLGRGADDLVLLVESLPARLDGAIDALEALLAGAAGLFVLPKRCRRYRAHEDDDDGVGGAVFRDIWCDEKEAASLHRSAMEEEARRHSDDVARKELESLEVVTADDGGGGGNTVHGDKAPVDGEGEAATPAKRGDASGGQECGVEDVQRVETPAAEITDAKITDAMKDSTEIVKDEDQERGGSEREEEETFAMARTAESREEALLGLFDIAWQQKLA

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0019160 OsLiXu_04g0019160.02 Chr04 27140321 27142176 - NAM
CDS seq

atggaaaatcaggccgtgtcggagatgcatgtcgttatggatttggaaggcacgaccaagaggataccgccgatgcagacgccgagggcgcggctgctgcgcagctgcggcgagtccatcctggccatggcgcgcggggcgtaccggcgcgtggaggcgatgcggtgcccggtggggtgcgtggccaggggcgcctcccgcgcggcggccccggtgctgagcccgctgcagctgaggtgcctctcggcgctcgccttcgcggacaggcagctcctcgtcgtccaggacgtcgccgcggtgctcttcccggccgccgagcgcttcctcggcaggggcgccgacgacctcgtcctcctcgtcgagtccctgcccgccaggctcgacggcgcgatcgacgccctcgaggccctcctcgccggcgccgcggggctgttcgttctccccaagcgttgccgccgctaccgagcccacgaggacgatgacgacggcgtcggcggcgccgtctttagggacatctggtgcgacgagaaggaagccgcgtcgttgcaccgatcagcaatggaggaagaggcgcggaggcattccgacgacgtggctcggaaggaactcgagagcttggaggtcgtcacggcggacgacggcggcggcggtggcaacaccgtgcatggcgacaaggctcccgtcgacggcgaaggagaggcggcgactccggcgaaacgcggcgacgcatcaggtggccaagaatgcggcgtggaggatgtacagcgggtggagacgccagctgcagagatcacagatgccaagatcacagatgccatgaaggacagcacggagatcgtgaaggatgaggaccaggagagaggaggcagcgagagggaagaagaggagaccttcgccatggcccgcacggcggagagcagggaggaagcattgctgggtctcttcgatatagcatggcagcagaagctagcgtag

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Protein seq

MENQAVSEMHVVMDLEGTTKRIPPMQTPRARLLRSCGESILAMARGAYRRVEAMRCPVGCVARGASRAAAPVLSPLQLRCLSALAFADRQLLVVQDVAAVLFPAAERFLGRGADDLVLLVESLPARLDGAIDALEALLAGAAGLFVLPKRCRRYRAHEDDDDGVGGAVFRDIWCDEKEAASLHRSAMEEEARRHSDDVARKELESLEVVTADDGGGGGNTVHGDKAPVDGEGEAATPAKRGDASGGQECGVEDVQRVETPAAEITDAKITDAMKDSTEIVKDEDQERGGSEREEEETFAMARTAESREEALLGLFDIAWQQKLA

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Gene Transcript Chromosome Start End Strand Source
OsLiXu_04g0019160 OsLiXu_04g0019160.01 Chr04 27140321 27142185 - NAM
CDS seq

atggaaaatcaggccgtgtcggagatgcatgtcgttatggatttggaaggcacgaccaagaggataccgccgatgcagacgccgagggcgcggctgctgcgcagctgcggcgagtccatcctggccatggcgcgcggggcgtaccggcgcgtggaggcgatgcggtgcccggtggggtgcgtggccaggggcgcctcccgcgcggcggccccggtgctgagcccgctgcagctgaggtgcctctcggcgctcgccttcgcggacaggcagctcctcgtcgtccaggacgtcgccgcggtgctcttcccggccgccgagcgcttcctcggcaggggcgccgacgacctcgtcctcctcgtcgagtccctgcccgccaggctcgacggcgcgatcgacgccctcgaggccctcctcgccggcgccgcggggctgttcgttctccccaagcgttgccgccgctaccgagcccacgaggacgatgacgacggcgtcggcggcgccgtctttagggacatctggtgcgacgagaaggaagccgcgtcgttgcaccgatcagcaatggaggaagaggcgcggaggcattccgacgacgtggctcggaaggaactcgagagcttggaggtcgtcacggcggacgacggcggcggcggtggcaacaccgtgcatggcgacaaggctcccgtcgacggcgaaggagaggcggcgactccggcgaaacgcggcgacgcatcaggtggccaagaatgcggcgtggaggatgtacagcgggtggagacgccagctgcagagatcacagatgccaagatcacagatgccatgaaggacagcacggagatcgtgaaggatgaggaccaggagagaggaggcagcgagagggaagaagaggagaccttcgccatggcccgcacggcggagagcagggaggaagcattgctgggtctcttcgatatagcatggcagcagaagctagcgtag

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Protein seq

MENQAVSEMHVVMDLEGTTKRIPPMQTPRARLLRSCGESILAMARGAYRRVEAMRCPVGCVARGASRAAAPVLSPLQLRCLSALAFADRQLLVVQDVAAVLFPAAERFLGRGADDLVLLVESLPARLDGAIDALEALLAGAAGLFVLPKRCRRYRAHEDDDDGVGGAVFRDIWCDEKEAASLHRSAMEEEARRHSDDVARKELESLEVVTADDGGGGGNTVHGDKAPVDGEGEAATPAKRGDASGGQECGVEDVQRVETPAAEITDAKITDAMKDSTEIVKDEDQERGGSEREEEETFAMARTAESREEALLGLFDIAWQQKLA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.790355 0.000000 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0504700 RBH 4.681879 2.649734 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g42590 RBH 2.743542 0.539056 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os04g0504700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0019110 RBH 0.227580 0.000000 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0019880 RBH 0.000000 0.000000 0.247074
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0019600 RBH 3.245795 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0019330 RBH 0.470945 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0019530 RBH 2.555354 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0395300 RBH 8.917922 2.917529 9.9663975
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0018340 RBH 0.491997 0.000000 0.421598
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0395100 RBH 4.784788 0.024236 0.0040435
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0018820 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0018670 RBH 1.627380 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0018790 RBH 0.000000 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0019330 RBH 0.067445 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G018620 RBH 0.385656 0.000000 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0018560 RBH 0.655610 0.000000 1.139207
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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