Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g42590 | OGI:04076470 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:25191054-25192947 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTTTTGCAGGTTTGGCTGGAGCTAATATCATGGAAAGGCTTCGAAATGCACCTATTGATTCAGAAAACCCCCAGAACGGTCAGATACTGCTTGATTTTGAGGATGCTATGGGAGATAGGATCCAGGTGTTTATTGAGTGAGCATGCCTGTTTTCCATTTGCTGGCGCACTGCAAAATCCAAATGCATGGACCTTCAAAGCGGCACCAGACTTCTTGTTGTTGTGAAAACCAGTGAACTAGTAAAATCCAACATTGATCATATGACCTGAAGTCATGAACTAATGGTTTCCTAGTCCCTCGATGCTACACCCAAATAATCAATCTAGATGTGTGCGTAGCTGCACATTGCAATACCATGCAGAGTATTTGCCCGGGATTAGTCTGGTAGCCTTTGCTTGCCCCCAAAATCCTGAAGTCAAATTTCGAATAAAAAGCATTCTCAGGAGGTTTGAAATGTTTGCATGCTTCTATCTGCTGATATTTACATTTTTGAAGCAGTGAACAGCTCATGCGTTGTGATGTACCCAGGTTTTATTCTCTACAATCCGGTATGCGACAGTTCACAATATGACACTAGCAGTGCAAGGATTACTACAAGTCTACAACTTCACAACACTATACTATACAGTGTCCAATGGTTACACCTTTGCCCTTTGGTTACCCTACGCTAGCTTCTGCTGCCATGCTATATCGAAGAGACCCAGCAATGCTTCCTCCCTGCTCTCCGCCGTGCGGGCCATGGCGAAGGTCTCCTCTTCTTCCCTCTCGCTGCCTCCTCTCTCCTGGTCCTCATCCTTCACGATCTCCGTGCTGTCCTTCATGGCATCTGTGATCTCTGCAGCTGGCGTCTCCACCCGCTGTACATCCTCCACGCCGCATTCTTGGCCACCTGATGCGTCGCCGCGTTTCGCCGGAGTCGCCGCCTCTCCTTCGCCGTCGACGGGAGCCTTGTCGCCATGCACGGTGTTGCCACCGCCGCCGCCGTCGTCCGCCGTGACGACCTCCAAGCTCTCGAGTTCCTTCCGAGCCACGTCGTCGGAATGCCTCCGCGCCTCTTCCTCCATTGCTGATCGGTGCAACGACGCGGCTTCCTTCTCGTCGCACCAGATGTCCCTAAAGACGGCGCCGCCGACGCCGTCGTCATCGTCCTCGTGGGCTCGGTAGCGGCGGCAACGCTTGGGGAGAACGAACAGCCCCGCGGCGCCGGCGAGGAGGGCCTCGAGGGCGTCGATCGCGCCGTCGAGCCTGGCGGGCAGGGACTCGACGAGGAGGACGAGGTCGTCGGCGCCCCTGCCGAGGACGCGCTCGGCGGCCGGGAAGAGCACCGCGGCGACGTCCTGGACGACGAGGAGCTGCCTGTCCGCGAAGGCGAGCGCCGAGAGGCACCTCAGCCGCAGCGGGCTCAGCACCGGGGCCGCCGCGCGGGAGGCGCCCCTGGCCACGCACCCCACCGGGCACCGCATCGCCTCCACGCGCCGGTACGCCCCGCGCGCCATGGCCAGGATGGACTCGCCGCAGCTGCGCAGCAGCCGCGCCCTCGGCGTCTGCATCGGCGGTATCCTCTTGGTCGTGCCTTCCAAATCCTGCAAATCATAGGCATAGCACGCGGTATTAGCAGCAATCTTAAAGTTTGGAGTAGATTAACCGGACGAGAGAAACCAAAGCGTAAAAATCGGTGCTTATTTATCTCACCATAACGACATGCATCTCCGACACGGCCTGATTTTCCATCTCACAGACGACGACGTCGACGACCTGAAACCAGCAGAAATCAGTTCAGAGATGCATACTGGTCGTCAGGATTTGGAGCAGGGCGCGAGAAATTACGGAGCTGAGGGAGGCGAGAGACCGTGGCGGTGACCTCGCCGTGGTCACCCATGGTGGGTTGTCTGC
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| CDS seq | ATGGAAAATCAGGCCGTGTCGGAGATGCATGTCGTTATGGATTTGGAAGGCACGACCAAGAGGATACCGCCGATGCAGACGCCGAGGGCGCGGCTGCTGCGCAGCTGCGGCGAGTCCATCCTGGCCATGGCGCGCGGGGCGTACCGGCGCGTGGAGGCGATGCGGTGCCCGGTGGGGTGCGTGGCCAGGGGCGCCTCCCGCGCGGCGGCCCCGGTGCTGAGCCCGCTGCGGCTGAGGTGCCTCTCGGCGCTCGCCTTCGCGGACAGGCAGCTCCTCGTCGTCCAGGACGTCGCCGCGGTGCTCTTCCCGGCCGCCGAGCGCGTCCTCGGCAGGGGCGCCGACGACCTCGTCCTCCTCGTCGAGTCCCTGCCCGCCAGGCTCGACGGCGCGATCGACGCCCTCGAGGCCCTCCTCGCCGGCGCCGCGGGGCTGTTCGTTCTCCCCAAGCGTTGCCGCCGCTACCGAGCCCACGAGGACGATGACGACGGCGTCGGCGGCGCCGTCTTTAGGGACATCTGGTGCGACGAGAAGGAAGCCGCGTCGTTGCACCGATCAGCAATGGAGGAAGAGGCGCGGAGGCATTCCGACGACGTGGCTCGGAAGGAACTCGAGAGCTTGGAGGTCGTCACGGCGGACGACGGCGGCGGCGGTGGCAACACCGTGCATGGCGACAAGGCTCCCGTCGACGGCGAAGGAGAGGCGGCGACTCCGGCGAAACGCGGCGACGCATCAGGTGGCCAAGAATGCGGCGTGGAGGATGTACAGCGGGTGGAGACGCCAGCTGCAGAGATCACAGATGCCATGAAGGACAGCACGGAGATCGTGAAGGATGAGGACCAGGAGAGAGGAGGCAGCGAGAGGGAAGAAGAGGAGACCTTCGCCATGGCCCGCACGGCGGAGAGCAGGGAGGAAGCATTGCTGGGTCTCTTCGATATAGCATGGCAGCAGAAGCTAGCGTAG
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| Protein seq | MENQAVSEMHVVMDLEGTTKRIPPMQTPRARLLRSCGESILAMARGAYRRVEAMRCPVGCVARGASRAAAPVLSPLRLRCLSALAFADRQLLVVQDVAAVLFPAAERVLGRGADDLVLLVESLPARLDGAIDALEALLAGAAGLFVLPKRCRRYRAHEDDDDGVGGAVFRDIWCDEKEAASLHRSAMEEEARRHSDDVARKELESLEVVTADDGGGGGNTVHGDKAPVDGEGEAATPAKRGDASGGQECGVEDVQRVETPAAEITDAMKDSTEIVKDEDQERGGSEREEEETFAMARTAESREEALLGLFDIAWQQKLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g42590 | LOC_Os04g42590.1 | Chr04 | 25191054 | 25192947 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAAAATCAGGCCGTGTCGGAGATGCATGTCGTTATGGATTTGGAAGGCACGACCAAGAGGATACCGCCGATGCAGACGCCGAGGGCGCGGCTGCTGCGCAGCTGCGGCGAGTCCATCCTGGCCATGGCGCGCGGGGCGTACCGGCGCGTGGAGGCGATGCGGTGCCCGGTGGGGTGCGTGGCCAGGGGCGCCTCCCGCGCGGCGGCCCCGGTGCTGAGCCCGCTGCGGCTGAGGTGCCTCTCGGCGCTCGCCTTCGCGGACAGGCAGCTCCTCGTCGTCCAGGACGTCGCCGCGGTGCTCTTCCCGGCCGCCGAGCGCGTCCTCGGCAGGGGCGCCGACGACCTCGTCCTCCTCGTCGAGTCCCTGCCCGCCAGGCTCGACGGCGCGATCGACGCCCTCGAGGCCCTCCTCGCCGGCGCCGCGGGGCTGTTCGTTCTCCCCAAGCGTTGCCGCCGCTACCGAGCCCACGAGGACGATGACGACGGCGTCGGCGGCGCCGTCTTTAGGGACATCTGGTGCGACGAGAAGGAAGCCGCGTCGTTGCACCGATCAGCAATGGAGGAAGAGGCGCGGAGGCATTCCGACGACGTGGCTCGGAAGGAACTCGAGAGCTTGGAGGTCGTCACGGCGGACGACGGCGGCGGCGGTGGCAACACCGTGCATGGCGACAAGGCTCCCGTCGACGGCGAAGGAGAGGCGGCGACTCCGGCGAAACGCGGCGACGCATCAGGTGGCCAAGAATGCGGCGTGGAGGATGTACAGCGGGTGGAGACGCCAGCTGCAGAGATCACAGATGCCATGAAGGACAGCACGGAGATCGTGAAGGATGAGGACCAGGAGAGAGGAGGCAGCGAGAGGGAAGAAGAGGAGACCTTCGCCATGGCCCGCACGGCGGAGAGCAGGGAGGAAGCATTGCTGGGTCTCTTCGATATAGCATGGCAGCAGAAGCTAGCGTAG
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| Protein seq | MENQAVSEMHVVMDLEGTTKRIPPMQTPRARLLRSCGESILAMARGAYRRVEAMRCPVGCVARGASRAAAPVLSPLRLRCLSALAFADRQLLVVQDVAAVLFPAAERVLGRGADDLVLLVESLPARLDGAIDALEALLAGAAGLFVLPKRCRRYRAHEDDDDGVGGAVFRDIWCDEKEAASLHRSAMEEEARRHSDDVARKELESLEVVTADDGGGGGNTVHGDKAPVDGEGEAATPAKRGDASGGQECGVEDVQRVETPAAEITDAMKDSTEIVKDEDQERGGSEREEEETFAMARTAESREEALLGLFDIAWQQKLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.743542 | 0.539056 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0504700 | RBH | 4.681879 | 2.649734 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0504700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019110 | RBH | 0.227580 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019880 | RBH | 0.000000 | 0.000000 | 0.247074 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019600 | RBH | 3.245795 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019330 | RBH | 0.470945 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019530 | RBH | 2.555354 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0395300 | RBH | 8.917922 | 2.917529 | 9.9663975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018340 | RBH | 0.491997 | 0.000000 | 0.421598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0395100 | RBH | 4.784788 | 0.024236 | 0.0040435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018820 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018670 | RBH | 1.627380 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018790 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019160 | RBH | 0.790355 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019330 | RBH | 0.067445 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018620 | RBH | 0.385656 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018560 | RBH | 0.655610 | 0.000000 | 1.139207 |
