Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0018900 | OGI:04076050 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:26951093-26954968 | ||||||||
| Gene Symbol | OsPP2C42, PP2C42, OsPP67 | ||||||||||
| DNA seq | agtttccGggggttgtgcactactgcagtgttacattgttcggcagttcgtttttggtaaacatctatccatccttagaccatagtagaactgaaatttgggaccgcagagttttctccccctcgtttattcttgttcttgaatgctagattcgagaatctatgattatacttccttttaatcaattccctaaattagtcgttaccatatgttttgattatacttcctcgagtgaatttcttcattcttcagattgtctGgtttattcttgcaagatgattgtaatcttgtctactttttgtatgatgcagttgtgtttgttttcacttccctctgttggaatgcactgataaaatttactattatgctgtgctaaatttctatgtaTtttttactgtatcatcatagttcaccttaggtctaactttcatgctagatcttgggttcaaaatgatggcatttgtgtatcttgaagattataaatgcaagatatAaaaagaagaaaaaaaaatcctggaatgcatccgtgggacctgtgtctaccAaaaaattgctttgtatggactgctttagagtcatgagtcatctttgcttgcttgctcatcaacaatatgtgtccaaaacattggagttatgctttgagctttgcaaacagtggcataccgcgtatctaTtttttgtttctgcaaaatgcagttcaaattcaagctagttaacctttctattcattctgccccaataattcctattcgtattttcaccgttacttctagtatttaggtgatctgtaacctggtcttagtatggaatttaaggataTtttattcctattattatgtttcagcgaagcagactctgctatggctcaacctcaacgtcccctccaagttcctgacataacaaagtctactcattctggagggaacactgtacttgcttatgcttcatcagctatgcaaggataccgtagcaccatggaagatgccgtgagtaaccttccagtcttttgtaggagaaatggggggttggcttgcaactaattttggtgaaattctaaaggctaatttgtgtactcttctattctccagcatgcgactattgaaaatcttgatgctcccactaacacgtcattctttggtgtttatgatggccatggaggtttgatcttcaatctcatccccatataaacagcaaaattcaaatttattgtactgattgaggggatactcccttctcattgtatagggcatattttctttacgcatgctcattcttctttaaaagctacactttcaactttgatgtctcacataatatattgttcatagctacaaaaccaatatgacgagaaagcactttgactaattgttggtcaaaacctacaaagtttgacttcttgaaaagtatgctcaccctacatagtacataatgtggggggaggactaggctagtaaaatttataatatccatgtacatgcaaccttcattgcactcaagagtaatgttgcgcaatggttatgtaagatgagtatctcaattatttaacttctatttcaggttctgctgtagcaaggtattgcgcaaatcacttgcacaataaggttttggagcaagaagattttagcagtaaccttgctaatgcattgaggcaatcctttttcaggttgtttttacagctagttaatccattaactctatattttgatgccacatgagttctttttataagaatgtaagaaacaaccatcgccacattggtgttcattattgcacctgttgtgcatccaaatataaaatatgtaatcctttttcctccttaattgttgcagaatggatgagatgttgagaaatcaggcggcaagcaaggaattaactgagtatggtagtggcaacgagtattggagaacagctgggcggtcttggctcagatgtgctccttgtgtgcaggtaatatctcaattgttctgtagatcgagaatctaaggtttttatatttttgttatttacttcaagttggtttttgttttccagggacctgtctattgtggaccattagcagaaggatgtacagcatgtgtggttctcattagaaatacgcagatcgttgttggaaatgctggtgatgctcgttgtgtaatctcaaggaatggtcaggtgcagtgactacttttgttttcaaatgcctagctggtatttcctttttcataatggatgatgcactctaatgtcacctaactattctgtttatttctgttgtattcgaaggcaatcgctttatccaatgatcacaaaccaaattttccggaggaaactcagagaatagtagctgcaggaggttccgtatctttttctaggggttcccaccgtgttaataatggaattgcagtatcaagagcaatcggtatagcttatatgtttgttggcggtgtgaggtcatacacaaacaatttaatgtgttgtaactggtattcttcttctttatacaggggatttatcttacaagaacaacaaaaagttgcgtcctgaacaacaattgctgacttgttctcctgaaattcgagctgtaaggataactacgttgtgttattgaagttaagtttgtcccactggatatgagctgatgcaaaatgatccccttttgtctctggcaggaccaattaactgatgataccgagtttcttgttatagcatgtgatggagtctggtaagtcctcagctaaaagtatcagaaacagttcttatatttttctcccatgttcatgatttcttgcagaatataggaactccaaatgacaattctctctcgtacgcttatttgtttgttcaaaatatttaccgacaaaatttgcagattttgttcagctcagtttgatttactgactaggctactttaccaccatgtacataaagtcattttgtactgttgttgaaccggtgggtctaattcctttcgttagtttagtgtgatgatagcattggataggtcaaatgtctgcacctccctatatatgggttcggatgctttattgtgtccagatgactattaacttggtggcatgaatttcagtttcacctgttcagttcgatggaaatgaccatcgaatatatctaatttatatcataaggactaaacttgaagttcctggatgaggaaattatttatgaaacctgatggagtggtgataggaatttcaccctgcctgaccattactctttgacacaattaatgtaacttgcagctgtttgctctatatttacatatttttttttggttttgtagggatgtcttggcaaaccaggctgtggttgattttgtacgccttcacttaaacaatgtgagtgacattccctgccccctctccagtgatacactgtaacagtaaccttgctaccagatgaggaaaatttatccgtgtgcagattatgcctgtagaaatgtcttcatactgagaattataattttgtccagcatatcttgccctgaatgtagctctgacatttagcacagactatcctctaaatgggatggtgcctggcctagttaaataattttctgtcggattgccgtttgtatagtctaaaaatggaagcgtgtgcaccatgttttgcaccttgtccatttacagttatatgttgttattccttttgccttgacatatatgtatgatgtgaccaacacaGggggtggagctgtcggtaatctgcgagagccttcttcaggaggccattacacgagacccaccatcgacggacaacatgagcgtcatactggttcggttcctgcacccagagggcaacaGgggggcgagggcggctacttccagcaccagtaccggcaccgtccccagccgccacagcaaaagcatatcgctttga
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| CDS seq | atggctcaacctcaacgtcccctccaagttcctgacataacaaagtctactcattctggagggaacactgtacttgcttatgcttcatcagctatgcaaggataccgtagcaccatggaagatgcccatgcgactattgaaaatcttgatgctcccactaacacgtcattctttggtgtttatgatggccatggaggttctgctgtagcaaggtattgcgcaaatcacttgcacaataaggttttggagcaagaagattttagcagtaaccttgctaatgcattgaggcaatcctttttcagaatggatgagatgttgagaaatcaggcggcaagcaaggaattaactgagtatggtagtggcaacgagtattggagaacagctgggcggtcttggctcagatgtgctccttgtgtgcagggacctgtctattgtggaccattagcagaaggatgtacagcatgtgtggttctcattagaaatacgcagatcgttgttggaaatgctggtgatgctcgttgtgtaatctcaaggaatggtcaggcaatcgctttatccaatgatcacaaaccaaattttccggaggaaactcagagaatagtagctgcaggaggttccgtatctttttctaggggttcccaccgtgttaataatggaattgcagtatcaagagcaatcggtatagcttatatgtttgttggcggggatttatcttacaagaacaacaaaaagttgcgtcctgaacaacaattgctgacttgttctcctgaaattcgagctgaccaattaactgatgataccgagtttcttgttatagcatgtgatggagtctgggatgtcttggcaaaccaggctgtggttgattttgtacgccttcacttaaacaatggggtggagctgtcggtaatctgcgagagccttcttcaggaggccattacacgagacccaccatcgacggacaacatgagcgtcatactggttcggttcctgcacccagagggcaacaGgggggcgagggcggctacttccagcaccagtaccggcaccgtccccagccgccacagcaaaagcatatcgctttga
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| Protein seq | MAQPQRPLQVPDITKSTHSGGNTVLAYASSAMQGYRSTMEDAHATIENLDAPTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFRMDEMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPCVQGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGIAYMFVGGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILVRFLHPEGNRGARAATSSTSTGTVPSRHSKSISL |
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| Function | Probable protein phosphatase 2C 42 [UniProtKB/Swiss-Prot:Q7XU84] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0018900 | OsLiXu_04g0018900.01 | Chr04 | 26951093 | 26954968 | + | NAM | ||
| CDS seq | atggctcaacctcaacgtcccctccaagttcctgacataacaaagtctactcattctggagggaacactgtacttgcttatgcttcatcagctatgcaaggataccgtagcaccatggaagatgcccatgcgactattgaaaatcttgatgctcccactaacacgtcattctttggtgtttatgatggccatggaggttctgctgtagcaaggtattgcgcaaatcacttgcacaataaggttttggagcaagaagattttagcagtaaccttgctaatgcattgaggcaatcctttttcagaatggatgagatgttgagaaatcaggcggcaagcaaggaattaactgagtatggtagtggcaacgagtattggagaacagctgggcggtcttggctcagatgtgctccttgtgtgcagggacctgtctattgtggaccattagcagaaggatgtacagcatgtgtggttctcattagaaatacgcagatcgttgttggaaatgctggtgatgctcgttgtgtaatctcaaggaatggtcaggcaatcgctttatccaatgatcacaaaccaaattttccggaggaaactcagagaatagtagctgcaggaggttccgtatctttttctaggggttcccaccgtgttaataatggaattgcagtatcaagagcaatcggtatagcttatatgtttgttggcggggatttatcttacaagaacaacaaaaagttgcgtcctgaacaacaattgctgacttgttctcctgaaattcgagctgaccaattaactgatgataccgagtttcttgttatagcatgtgatggagtctgggatgtcttggcaaaccaggctgtggttgattttgtacgccttcacttaaacaatggggtggagctgtcggtaatctgcgagagccttcttcaggaggccattacacgagacccaccatcgacggacaacatgagcgtcatactggttcggttcctgcacccagagggcaacaGgggggcgagggcggctacttccagcaccagtaccggcaccgtccccagccgccacagcaaaagcatatcgctttga
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| Protein seq | MAQPQRPLQVPDITKSTHSGGNTVLAYASSAMQGYRSTMEDAHATIENLDAPTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFRMDEMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPCVQGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGIAYMFVGGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILVRFLHPEGNRGARAATSSTSTGTVPSRHSKSISL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0500900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0500900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018830 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019600 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019310 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019260 | RBH | 1.700086 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0392100 | RBH | 0.1416905 | 0.1566125 | 2.6508395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018060 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0534400 | SBH | 9.5868305 | 17.9254015 | 12.5143845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018550 | RBH | 0.025952 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018400 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024120 | RBH | 0.0 | 0.148118 | 0.118819 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018340 | RBH | 0.000000 | 0.0 | 0.502442 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018310 | RBH | 0.0 | 0.0 | 0.0 |
