Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsIR64_04g0018060 | OGI:04076050 | 15/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr04:24613259-24617134 | ||||||||
Gene Symbol | OsPP2C42, PP2C42, OsPP67 | ||||||||||
DNA seq | AGTTTCCGGGGGTTGTGCACTACTGCAGTGTTACATTGTTCGGCAGTTCGTTTTTGGTAAACATCTATCCATCCTTAGACCATAGTAGAACTGAAATTTGGGACCGCAGAGTTTTCTCCCCCTCGTTTATTCTTGTTCTTGAATGCTAGATTCGAGAATCTATGATTATACTTCCTTTTAATCAATTCCCTAAATTAGTCGTTACCATATGTTTTGATTATACTTCCTCGAGTGAATTTCTTCATTCTTCAGATTGTCTGGTTTATTCTTGCAAGATGATTGTAATCTTGTCTACTTTTTGTATGATGCAGTTGTGTTTGTTTTCACTTCCCTCTGTTGGAATGCACTGATAAAATTTACTATTATGCTGTGCTAAATTTCTATGTATTTTTTACTGTATCATCATAGTTCACCTTAGGTCTAACTTTCATGCTAGATCTTGGGTTCAAAATGATGGCATTTGTGTATCTTGAAGATTATAAATGCAAGATATAAAAAGAAGAAAAAAAAATCCTGGAATGCATCCGTGGGACCTGTGTCTACCAAAAAATTGCTTTGTATGGACTGCTTTAGAGTCATGAGTCATCTTTGCTTGCTTGCTCATCAACAATATGTGTCCAAAACATTGGAGTTATGCTTTGAGCTTTGCAAACAGTGGCATACCGCGTATCTATTTTTTGTTTCTGCAAAATGCAGTTCAAATTCAAGCTAGTTAACCTTTCTATTCATTCTGCCCCAATAATTCCTATTCGTATTTTCACCGTTACTTCTAGTATTTAGGTGATCTGTAACCTGGTCTTAGTATGGAATTTAAGGATATTTTATTCCTATTATTATGTTTCAGCGAAGCAGACTCTGCTATGGCTCAACCTCAACGTCCCCTCCAAGTTCCTGACATAACAAAGTCTACTCATTCTGGAGGGAACACTGTACTTGCTTATGCTTCATCAGCTATGCAAGGATACCGTAGCACCATGGAAGATGCCGTGAGTAACCTTCCAGTCTTTTGTAGGAGAAATGGGGGGTTGGCTTGCAACTAATTTTGGTGAAATTCTAAAGGCTAATTTGTGTACTCTTCTATTCTCCAGCATGCGACTATTGAAAATCTTGATGCTCCCACTAACACGTCATTCTTTGGTGTTTATGATGGCCATGGAGGTTTGATCTTCAATCTCATCCCCATATAAACAGCAAAATTCAAATTTATTGTACTGATTGAGGGGATACTCCCTTCTCATTGTATAGGGCATATTTTCTTTACGCATGCTCATTCTTCTTTAAAAGCTACACTTTCAACTTTGATGTCTCACATAATATATTGTTCATAGCTACAAAACCAATATGACGAGAAAGCACTTTGACTAATTGTTGGTCAAAACCTACAAAGTTTGACTTCTTGAAAAGTATGCTCACCCTACATAGTACATAATGTGGGGGGAGGACTAGGCTAGTAAAATTTATAATATCCATGTACATGCAACCTTCATTGCACTCAAGAGTAATGTTGCGCAATGGTTATGTAAGATGAGTATCTCAATTATTTAACTTCTATTTCAGGTTCTGCTGTAGCAAGGTATTGCGCAAATCACTTGCACAATAAGGTTTTGGAGCAAGAAGATTTTAGCAGTAACCTTGCTAATGCATTGAGGCAATCCTTTTTCAGGTTGTTTTTACAGCTAGTTAATCCATTAACTCTATATTTTGATGCCACATGAGTTCTTTTTATAAGAATGTAAGAAACAACCATCGCCACATTGGTGTTCATTATTGCACCTGTTGTGCATCCAAATATAAAATATGTAATCCTTTTTCCTCCTTAATTGTTGCAGAATGGATGAGATGTTGAGAAATCAGGCGGCAAGCAAGGAATTAACTGAGTATGGTAGTGGCAACGAGTATTGGAGAACAGCTGGGCGGTCTTGGCTCAGATGTGCTCCTTGTGTGCAGGTAATATCTCAATTGTTCTGTAGATCGAGAATCTAAGGTTTTTATATTTTTGTTATTTACTTCAAGTTGGTTTTTGTTTTCCAGGGACCTGTCTATTGTGGACCATTAGCAGAAGGATGTACAGCATGTGTGGTTCTCATTAGAAATACGCAGATCGTTGTTGGAAATGCTGGTGATGCTCGTTGTGTAATCTCAAGGAATGGTCAGGTGCAGTGACTACTTTTGTTTTCAAATGCCTAGCTGGTATTTCCTTTTTCATAATGGATGATGCACTCTAATGTCACCTAACTATTCTGTTTATTTCTGTTGTATTCGAAGGCAATCGCTTTATCCAATGATCACAAACCAAATTTTCCGGAGGAAACTCAGAGAATAGTAGCTGCAGGAGGTTCCGTATCTTTTTCTAGGGGTTCCCACCGTGTTAATAATGGAATTGCAGTATCAAGAGCAATCGGTATAGCTTATATGTTTGTTGGCGGTGTGAGGTCATACACAAACAATTTAATGTGTTGTAACTGGTATTCTTCTTCTTTATACAGGGGATTTATCTTACAAGAACAACAAAAAGTTGCGTCCTGAACAACAATTGCTGACTTGTTCTCCTGAAATTCGAGCTGTAAGGATAACTACGTTGTGTTATTGAAGTTAAGTTTGTCCCACTGGATATGAGCTGATGCAAAATGATCCCCTTTTGTCTCTGGCAGGACCAATTAACTGATGATACCGAGTTTCTTGTTATAGCATGTGATGGAGTCTGGTAAGTCCTCAGCTAAAAGTATCAGAAACAGTTCTTATATTTTTCTCCCATGTTCATGATTTCTTGCAGAATATAGGAACTCCAAATGACAATTCTCTCTCGTACGCTTATTTGTTTGTTCAAAATATTTACCGACAAAATTTGCAGATTTTGTTCAGCTCAGTTTGATTTACTGACTAGGCTACTTTACCACCATGTACATAAAGTCATTTTGTACTGTTGTTGAACCGGTGGGTCTAATTCCTTTCGTTAGTTTAGTGTGATGATAGCATTGGATAGGTCAAATGTCTGCACCTCCCTATATATGGGTTCGGATGCTTTATTGTGTCCAGATGACTATTAACTTGGTGGCATGAATTTCAGTTTCACCTGTTCAGTTCGATGGAAATGACCATCGAATATATCTAATTTATATCATAAGGACTAAACTTGAAGTTCCTGGATGAGGAAATTATTTATGAAACCTGATGGAGTGGTGATAGGAATTTCACCCTGCCTGACCATTACTCTTTGACACAATTAATGTAACTTGCAGCTGTTTGCTCTATATTTACATATTTTTTTTTGGTTTTGTAGGGATGTCTTGGCAAACCAGGCTGTGGTTGATTTTGTACGCCTTCACTTAAACAATGTGAGTGACATTCCCTGCCCCCTCTCCAGTGATACACTGTAACAGTAACCTTGCTACCAGATGAGGAAAATTTATCCGTGTGCAGATTATGCCTGTAGAAATGTCTTCATACTGAGAATTATAATTTTGTCCAGCATATCTTGCCCTGAATGTAGCTCTGACATTTAGCACAGACTATCCTCTAAATGGGATGGTGCCTGGCCTAGTTAAATAATTTTCTGTCGGATTGCCGTTTGTATAGTCTAAAAATGGAAGCGTGTGCACCATGTTTTGCACCTTGTCCATTTACAGTTATATGTTGTTATTCCTTTTGCCTTGACATATATGTATGATGTGACCAACACAGGGGGTGGAGCTGTCGGTAATCTGCGAGAGCCTTCTTCAGGAGGCCATTACACGAGACCCACCATCGACGGACAACATGAGCGTCATACTGGTTCGGTTCCTGCACCCAGAGGGCAACAGGGGGGCGAGGGCGGCTACTTCCAGCACCAGTACCGGCACCGTCCCCAGCCGCCACAGCAAAAGCATATCGCTTTGA
More
|
||||||||||
CDS seq | ATGGCTCAACCTCAACGTCCCCTCCAAGTTCCTGACATAACAAAGTCTACTCATTCTGGAGGGAACACTGTACTTGCTTATGCTTCATCAGCTATGCAAGGATACCGTAGCACCATGGAAGATGCCCATGCGACTATTGAAAATCTTGATGCTCCCACTAACACGTCATTCTTTGGTGTTTATGATGGCCATGGAGGTTCTGCTGTAGCAAGGTATTGCGCAAATCACTTGCACAATAAGGTTTTGGAGCAAGAAGATTTTAGCAGTAACCTTGCTAATGCATTGAGGCAATCCTTTTTCAGAATGGATGAGATGTTGAGAAATCAGGCGGCAAGCAAGGAATTAACTGAGTATGGTAGTGGCAACGAGTATTGGAGAACAGCTGGGCGGTCTTGGCTCAGATGTGCTCCTTGTGTGCAGGGACCTGTCTATTGTGGACCATTAGCAGAAGGATGTACAGCATGTGTGGTTCTCATTAGAAATACGCAGATCGTTGTTGGAAATGCTGGTGATGCTCGTTGTGTAATCTCAAGGAATGGTCAGGCAATCGCTTTATCCAATGATCACAAACCAAATTTTCCGGAGGAAACTCAGAGAATAGTAGCTGCAGGAGGTTCCGTATCTTTTTCTAGGGGTTCCCACCGTGTTAATAATGGAATTGCAGTATCAAGAGCAATCGGTATAGCTTATATGTTTGTTGGCGGGGATTTATCTTACAAGAACAACAAAAAGTTGCGTCCTGAACAACAATTGCTGACTTGTTCTCCTGAAATTCGAGCTGACCAATTAACTGATGATACCGAGTTTCTTGTTATAGCATGTGATGGAGTCTGGGATGTCTTGGCAAACCAGGCTGTGGTTGATTTTGTACGCCTTCACTTAAACAATGGGGTGGAGCTGTCGGTAATCTGCGAGAGCCTTCTTCAGGAGGCCATTACACGAGACCCACCATCGACGGACAACATGAGCGTCATACTGGTTCGGTTCCTGCACCCAGAGGGCAACAGGGGGGCGAGGGCGGCTACTTCCAGCACCAGTACCGGCACCGTCCCCAGCCGCCACAGCAAAAGCATATCGCTTTGA
More
|
||||||||||
Protein seq | MAQPQRPLQVPDITKSTHSGGNTVLAYASSAMQGYRSTMEDAHATIENLDAPTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFRMDEMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPCVQGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGIAYMFVGGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILVRFLHPEGNRGARAATSSTSTGTVPSRHSKSISL |
||||||||||
Function | Probable protein phosphatase 2C 42 [UniProtKB/Swiss-Prot:Q7XU84] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsIR64_04g0018060 | OsIR64_04g0018060.01 | Chr04 | 24613259 | 24617134 | + | NAM | ||
CDS seq | ATGGCTCAACCTCAACGTCCCCTCCAAGTTCCTGACATAACAAAGTCTACTCATTCTGGAGGGAACACTGTACTTGCTTATGCTTCATCAGCTATGCAAGGATACCGTAGCACCATGGAAGATGCCCATGCGACTATTGAAAATCTTGATGCTCCCACTAACACGTCATTCTTTGGTGTTTATGATGGCCATGGAGGTTCTGCTGTAGCAAGGTATTGCGCAAATCACTTGCACAATAAGGTTTTGGAGCAAGAAGATTTTAGCAGTAACCTTGCTAATGCATTGAGGCAATCCTTTTTCAGAATGGATGAGATGTTGAGAAATCAGGCGGCAAGCAAGGAATTAACTGAGTATGGTAGTGGCAACGAGTATTGGAGAACAGCTGGGCGGTCTTGGCTCAGATGTGCTCCTTGTGTGCAGGGACCTGTCTATTGTGGACCATTAGCAGAAGGATGTACAGCATGTGTGGTTCTCATTAGAAATACGCAGATCGTTGTTGGAAATGCTGGTGATGCTCGTTGTGTAATCTCAAGGAATGGTCAGGCAATCGCTTTATCCAATGATCACAAACCAAATTTTCCGGAGGAAACTCAGAGAATAGTAGCTGCAGGAGGTTCCGTATCTTTTTCTAGGGGTTCCCACCGTGTTAATAATGGAATTGCAGTATCAAGAGCAATCGGTATAGCTTATATGTTTGTTGGCGGGGATTTATCTTACAAGAACAACAAAAAGTTGCGTCCTGAACAACAATTGCTGACTTGTTCTCCTGAAATTCGAGCTGACCAATTAACTGATGATACCGAGTTTCTTGTTATAGCATGTGATGGAGTCTGGGATGTCTTGGCAAACCAGGCTGTGGTTGATTTTGTACGCCTTCACTTAAACAATGGGGTGGAGCTGTCGGTAATCTGCGAGAGCCTTCTTCAGGAGGCCATTACACGAGACCCACCATCGACGGACAACATGAGCGTCATACTGGTTCGGTTCCTGCACCCAGAGGGCAACAGGGGGGCGAGGGCGGCTACTTCCAGCACCAGTACCGGCACCGTCCCCAGCCGCCACAGCAAAAGCATATCGCTTTGA
More
|
|||||||
Protein seq | MAQPQRPLQVPDITKSTHSGGNTVLAYASSAMQGYRSTMEDAHATIENLDAPTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFRMDEMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPCVQGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGIAYMFVGGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILVRFLHPEGNRGARAATSSTSTGTVPSRHSKSISL
More
|
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0500900 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42260 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os04g0500900 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018830 | RBH | 0.0 | 0.0 | 0.000000 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019600 | RBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019310 | RBH | 0.0 | 0.0 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019050 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019260 | RBH | 1.700086 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0392100 | RBH | 0.1416905 | 0.1566125 | 2.6508395 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023820 | RBH | 0.000000 | 0.0 | 1.146600 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0534400 | SBH | 9.5868305 | 17.9254015 | 12.5143845 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018550 | RBH | 0.025952 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018400 | RBH | 0.000000 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018510 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018900 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019050 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018340 | RBH | 0.000000 | 0.0 | 0.502442 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018310 | RBH | 0.0 | 0.0 | 0.0 |