Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0015450 | OGI:04068570 | 11/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:24313291-24315861 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagtcgcggttcgctcgagaggaacgcggcggagcacagcagaggcgagatggcggcggttttcctccgcgccgccgctcgtgccacgaggtcctccgcgctcgtccgcgccatcctcgcgagccggagccccctctcgtcgtcctcctgtgccgcctcccctacgaccgcggcgcccgtccccggcaccgcgccgcgcgccgccgcggctggcgatggcgacgagggatgcgcggcggccgcggccacgcccgcggacgtgggaggggacgaggacgacctgagaagccgcgtcttccggctgcgcctggcgaagcggagcgcgaccgcggcgctcgagaggtgggccggggaaggccgcgccgcgtcggcggcggagctccgcggcatcgcccgcgacctcagccgcgcaggccggtacaagcacgcgctcgaggtttggccgaccgacccgctatagctctgatctcttctaatcgttcgtctgttctgcgcggttgtagaactattggaagattcagagcagatttggtgcatgcctctgtgatctgttccttgtactccttgaaattgctaggaaatgttggtgattggtgatgcggttctatctagtcgttgaaaaatgttaggtggcgtatttactgccttccaccatggttgttgtgatggaacattccggtcatttacgcgcttttagctttgcccttcattttctattactgataggtagtgaaaaaggcttttgatgaactcatctagacatctagtagtattgacgtgtaaggagctgtaatttgttgtcatcataattgcaggccaaatactgctatttcaacactttatccatgtatatcatgctgtttcattacatttggtaatgaatgttaactatcatgaggggtgttatttacatgctgggctactatctctaggtctctacagtctacttataccatcactaaatttgttgtcgtcgaaattgcaggccatatatttttgaacattttatctctgccatatcatgctatttcacttcacttggaaatgaatgttaaccatcatgaggggcgttatttatgagctgatctactatctttaggtctctgcagtctacatacatcattaccgaatttgttgtcatcagaattgcatgtatttgaacattttatccataccatatcatgctatttcacttcatttagaaatgaatgccaaccagcatgagaggtgttatttacatgctgagctactatttttaggtctccacatacaccattactaaattaaataggccagattctctctcacacccacccacccaaaaaggccagcatacttgttcttggtatattggtaacaatcatgatagaatggattgaaaagatttagccaccaaacatttacctggtcagagttaatagagcatgcccatttagtcccttttttatctgattgtttatactgatgccctatggaacattgtaagcatgataaaacaatttggtaatgtctggcatgtttatgctcctataaaattatgtcaaaactcaaaatagtcagctcataccttaaaattttacaggtagcagagtggatgaagacacatcatgagtccgatttatctgagaatgactacggaatgcgcattgacttgattaccagagtttttggtgctaatgcagctgaagatttttttgagaaacttccagcttgtgtgcaatcactggaagcatatacagctctcctacattcttatgctcgatccaagatgacagacaaagctgagaggctgtttaaaagaatgaaggatgccaacctttccatgaatatccttgtttacaatgaaatgatgaccctgtacatttctgttggtgagcttgataaagttccggtcattgctgaagagctgaaaaggcaaaaattttccccagacctcttcacatacaatctccggatcagcgcttctgcggcatcaatggatctggagggcttcaaaggaatccttgatgagatgtcaaaagatccaaactccaatgaagggtggaagctgtaccagaacctcgctgtgatttacgtcgacgctggtcagcttgttggttcaggaaactcgctggtggaagcagaggcgaagatcagccagagggagtggatcacatacgatttcctcgtaatcttacacaccgggctcggcaaccgggatagaatcaaggacatttggaaatccatgctgatgacttcacagaggatgacgagtcggaactacatctgcgtgctctcatcctacctgatgtgcgggcagctgaaggatgccggggaagtcatcgaccagtggcagcggtcgaaagccccagagttcgacatctctgcctgcaataggctgtttgatgccttcctgaacgccggtttcaccgacacggcaaatagcttcagggaactgatgctgcaaaagagctgtatactgacaagcaggcaagaacgctcttcctgagtggccatccatgctgaaactgttgagtaggattatgtcattacatgatgcaataataatagatactttccagttggttgct
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| CDS seq | atggcggcggttttcctccgcgccgccgctcgtgccacgaggtcctccgcgctcgtccgcgccatcctcgcgagccggagccccctctcgtcgtcctcctgtgccgcctcccctacgaccgcggcgcccgtccccggcaccgcgccgcgcgccgccgcggctggcgatggcgacgagggatgcgcggcggccgcggccacgcccgcggacgtgggaggggacgaggacgacctgagaagccgcgtcttccggctgcgcctggcgaagcggagcgcgaccgcggcgctcgagaggtgggccggggaaggccgcgccgcgtcggcggcggagctccgcggcatcgcccgcgacctcagccgcgcaggccggtacaagcacgcgctcgaggtagcagagtggatgaagacacatcatgagtccgatttatctgagaatgactacggaatgcgcattgacttgattaccagagtttttggtgctaatgcagctgaagatttttttgagaaacttccagcttgtgtgcaatcactggaagcatatacagctctcctacattcttatgctcgatccaagatgacagacaaagctgagaggctgtttaaaagaatgaaggatgccaacctttccatgaatatccttgtttacaatgaaatgatgaccctgtacatttctgttggtgagcttgataaagttccggtcattgctgaagagctgaaaaggcaaaaattttccccagacctcttcacatacaatctccggatcagcgcttctgcggcatcaatggatctggagggcttcaaaggaatccttgatgagatgtcaaaagatccaaactccaatgaagggtggaagctgtaccagaacctcgctgtgatttacgtcgacgctggtcagcttgttggttcaggaaactcgctggtggaagcagaggcgaagatcagccagagggagtggatcacatacgatttcctcgtaatcttacacaccgggctcggcaaccgggatagaatcaaggacatttggaaatccatgctgatgacttcacagaggatgacgagtcggaactacatctgcgtgctctcatcctacctgatgtgcgggcagctgaaggatgccggggaagtcatcgaccagtggcagcggtcgaaagccccagagttcgacatctctgcctgcaataggctgtttgatgccttcctgaacgccggtttcaccgacacggcaaatagcttcagggaactgatgctgcaaaagagctgtatactgacaagcaggcaagaacgctcttcctga
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| Protein seq | MAAVFLRAAARATRSSALVRAILASRSPLSSSSCAASPTTAAPVPGTAPRAAAAGDGDEGCAAAAATPADVGGDEDDLRSRVFRLRLAKRSATAALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVAEWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISQREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQKSCILTSRQERSS |
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| Function | Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [UniProtKB/Swiss-Prot:Q94B59] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0015450 | OsLiXu_04g0015450.01 | Chr04 | 24313291 | 24315861 | + | NAM | ||
| CDS seq | atggcggcggttttcctccgcgccgccgctcgtgccacgaggtcctccgcgctcgtccgcgccatcctcgcgagccggagccccctctcgtcgtcctcctgtgccgcctcccctacgaccgcggcgcccgtccccggcaccgcgccgcgcgccgccgcggctggcgatggcgacgagggatgcgcggcggccgcggccacgcccgcggacgtgggaggggacgaggacgacctgagaagccgcgtcttccggctgcgcctggcgaagcggagcgcgaccgcggcgctcgagaggtgggccggggaaggccgcgccgcgtcggcggcggagctccgcggcatcgcccgcgacctcagccgcgcaggccggtacaagcacgcgctcgaggtagcagagtggatgaagacacatcatgagtccgatttatctgagaatgactacggaatgcgcattgacttgattaccagagtttttggtgctaatgcagctgaagatttttttgagaaacttccagcttgtgtgcaatcactggaagcatatacagctctcctacattcttatgctcgatccaagatgacagacaaagctgagaggctgtttaaaagaatgaaggatgccaacctttccatgaatatccttgtttacaatgaaatgatgaccctgtacatttctgttggtgagcttgataaagttccggtcattgctgaagagctgaaaaggcaaaaattttccccagacctcttcacatacaatctccggatcagcgcttctgcggcatcaatggatctggagggcttcaaaggaatccttgatgagatgtcaaaagatccaaactccaatgaagggtggaagctgtaccagaacctcgctgtgatttacgtcgacgctggtcagcttgttggttcaggaaactcgctggtggaagcagaggcgaagatcagccagagggagtggatcacatacgatttcctcgtaatcttacacaccgggctcggcaaccgggatagaatcaaggacatttggaaatccatgctgatgacttcacagaggatgacgagtcggaactacatctgcgtgctctcatcctacctgatgtgcgggcagctgaaggatgccggggaagtcatcgaccagtggcagcggtcgaaagccccagagttcgacatctctgcctgcaataggctgtttgatgccttcctgaacgccggtttcaccgacacggcaaatagcttcagggaactgatgctgcaaaagagctgtatactgacaagcaggcaagaacgctcttcctga
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| Protein seq | MAAVFLRAAARATRSSALVRAILASRSPLSSSSCAASPTTAAPVPGTAPRAAAAGDGDEGCAAAAATPADVGGDEDDLRSRVFRLRLAKRSATAALERWAGEGRAASAAELRGIARDLSRAGRYKHALEVAEWMKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISQREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQWQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQKSCILTSRQERSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.333946 | 0.307588 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0450200 | RBH | 0.843682 | 1.039981 | 1.856880 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37720 | RBH | 0.384667 | 0.472366 | 0.322798 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0450200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015130 | RBH | 0.000000 | 63.848682 | 9.188265 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016000 | RBH | 0.0 | 0.707040 | 0.416737 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015720 | RBH | 0.000000 | 0.000000 | 1.783106 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015300 | RBH | 0.0 | 0.041336 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015620 | RBH | 32.047806 | 31.702349 | 42.784405 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0350300 | RBH | 1.7004505 | 4.8438095 | 4.875961 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014470 | RBH | 0.000000 | 0.562425 | 0.086488 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0347100 | RBH | 2.4699095 | 6.3617185 | 11.5816275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015090 | RBH | 0.132769 | 0.014571 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014810 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014850 | RBH | 1.146890 | 4.592172 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021460 | SBH | 0.904146 | 0.0 | 1.007726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015600 | RBH | 0.108493 | 4.139742 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014700 | RBH | 0.0 | 0.622850 | 0.847498 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014770 | RBH | 0.0 | 0.000000 | 35.427826 |
