Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0004450 | OGI:04024860 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:7656306-7666747 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tctgatgacttaaatccgacggctccccgcctccctcccgatccgatccagatcgcggatcgcttcccctcccccgggcaaaatcaccgcgcactccctcctctttctatcgctcctgccgcctcgcctttcgcccccctccatctcgccaacgccaccgccaccgcctccgcctccgccaccccctccgcccgccgcccgccgcccctcctcccctgcgccgccgcatccgcaccgcccaaccccgccggccaccgaggacgcggaaaccgcacctcactcccggtctcccacgcctccctctcctcttttagtcagaacgcggacgccctcctctctcgcagccgtcgttggagcgagcaccgccactccaatcgccggcaatccccttcgccgtgcgcacccgtcgttggagcgagagccgtcgtcggttcctcctccaccgtcgccgccaccggatcaccgacgccgaccgcccgcatcgtagcctccgtgccaatccccccatctcgcgagcagagcaggggaggggaggggaggggaggggaggggtgccgacgtgccgtggtcctgctgcatcccggtgagcatccacatcatctttctgattcatctctctctctctctcccacccacttttgtctcaaatttacctgcattaaccctagcttctcttctagatctggatggagctcttctcttattttgtttgtttgtctccccaaaagtccaagttcgatccgcccctgctagggataaataagattcaattcaacacgaaacacacgcaaaattaatctgaagcacaagccccttcactcccttcacacgcaaaatcacatctggttcttgtagtttagaatgaacataatgctacagtatgccttgctgctcatgaactgcttgacaaaatgtctctcaaggttatatctgaaattctgagcatgttaatttgtgtctcccagtaaggttctgtcatcttctgtcatccattagtgcccaatcaaagaacttgcatataataacatatattctattcttttaaaaaagcagaagctattatctgaagttcagctctcagtttcacagtaaatttacataattaacagtgcatgtaatttgtgggtactcttatataggaaaggaagatcagcacaatactgacgggtttctcttcaagatgatcccgtggttctcagttttctgctttctacactgtctacatcttatatgtgttcattgaagctacagattgatggacatagctgtcaaacctgaacctaccaggcctcctggtcatgtttctcctcagctctcatcacatttatatgttttcttacccaattccatacaaaaaattttaccaaggcagacccgttaattttggtatggatcatgtgaattttgaagagaatacgtacaccgttaatttattcatgcattctgctttatactatagtctacccaatttattcaattattctgctttgtactgtggtctagccattttattcatttttttcgcgttgccctctgctgtcgtccaggaccgtcgcccacggcgccggcgacgattcaccgccgacgtcatcgtccaacaccgtgacttggcccttcgtcctccatgtccaccgcgccctcgccgccattcataagaacaacattgcagcacccaatctgtggcaccccatcgacacatacgaccgcgtcgccctggctcatcgtggctaaccccaccgacgaggtaactagatttaccttttgcttttgttcgattgtttgacggccgagcaacagggatcgcgaccagtcggcaagctgactgttttggttaactgataagtgataactgaggaatttaaagctgtgtgtgcttgtcatgtgctttcgggtagctgttcttaaccactgccaaaagtttcggaaggtgatagaaccaaacaggtagttccttagctgcctgtgcagtgtgcagcgtgtctctggaccaaaggttgtaaatgttgcataaatgtttttttttaaaaaaatccagttgaggtactcttgggtccaaagccataaatgcataaataaggtccaaaggcactaatttccattgctagctttcttgtcacttagtttcattacatttgacatatacccagatgatttttgttcttgtttgtgtacaggttcagagttttttatgtaataattactctctttccatatatgcagtacatttttattacacgataacatcagtgttaatgttctatatggcattactatcattatttttcaacttatgtcatgcatatcattccatatcttttacttctcttttattatgaaaatgacatctttctgattcgttgagggcatgcggggtagtatatctgttattttaatatattcagtgttttcatcaatatattgaccaaatattcggtttatatcagtaaagggccatgttcttttcacaagatctgtttctgaatatacagactgtgttgcaacatttgtagaattcaagttgtccgtagtcctgctttgcatgagtaaatgccaatcttatgtgtctgaactcttttcttctgtgtctgaactctcaagtgatgatctatgtttcccaaaaaatcttatgtctagcaaacttagtttctgtttccaaatgaaaaatcaagtagtgaataatgtacctgtattaaatgtactggtctcttatttagtaatgtatctagatacatatgctgaatttttatatatagaagcatatgttgcttttacacatgaaggtgtatatgctatcaggtttctataatatggttcataagtgaacagcatcaaatgtctacattactttagtttgaatgtacacgctgatataaaatttagagagcattcttggaatgtacatactgttaagaaaatttagatgaattaaatccttatgccttatatgttttttctcacacagttgtaagtttgtttggagaaggggacattcacaaactgcttgaaagaggtgttttggtatctcaatatatggtggaatatttactactgcttttagtaactcctagataatctttttttacatacatgcataactaaatttgcatatatcttcatgtgcatttgcgctctctgatattacaatggtaggatttgtctttgaattggtatagtgacgtatttctgattcattaagggcaaactggggagtagaactgttatgtgcgagatattcagtttatatttctaaacttgggtgcactttgaatcaggacgagtaggctcagttgaatctgttgagttacataaagaagaggtggatgtattgaactcactaatgtttttaggatgatgcttactggattgccgattttgaagttccattcagatcaaatattaatgatttatagattcaggtttgtctgaaaacgatataaaacaatatgctttgctgaacttaatactgggagatcactagggtggggtagacggccttcatggcgtctaggttctattgtggtccaacacatactctttttaccgatcctaatagatttggcataggtttatctacatctgactatgactactgtatattcctcaaaaatcctattagtatatgttttctgttctgactcggttggttgtctcttatattaaaggtaaggaaattgaaggagttgtagctatccaaatacatcagcttctcaaaatagaagagctaaatatactagtaatatgcccgtgctaacgctacgtgtatgtttagtaatagaaatcatgacacatggttcggtatcaagtatctaatatgataaatttaatatttaggaaaaaagaactacggagagagttattatattgttgctaattatatagcctccaaaatataaaatcacaacttttgtatcttaggaatacaaacaaaacatattgcctacaaataatacaaaccaaacttcatattacaaattagctggtggactaacagaggtagatcaggctcgctaacatctaatagtttgctcttgcattgtagtcaaaatcaaataggcacaagaaaaataatgaactgggatagagaagaatcaaacttgccgtagagctctagacaccggacgtcagggcccggagaggatcggtgtcggcgtgaaggcgagttgacgtgatggagaccgagcgcgctacagagactggcggggatagtggtcaggcggcacggcggcgatttgatgaagtcccgatggagagcggtcggcgatgggatcggcgaccacttgatgcggtgcaacggcgaccggcagagatggcgcgaggcggcgagacggcgctagggcgagttggcgcgatgggcagaggggccagatggggtggcgatgaatgcgcgagggcgagcatcgggtcggcggcggtgccgatctgtgcaacggcgagggcgagcgtggactggcggctgctggggataggcggcgacctggcggaggtgaatcggcgacggcgcgacggcaggggagagatgagggcgtcctgtgtcggggcgatggagagcgtggcgagccggcgcccttgacgatggaggattgaaggcctcggtggcggcggcggcgcacttgacgacggagcgggaggggagagagaggcgcggatgcggtacgggagggaggtgcgggggagtcgcggcgaatgcggaagagagggatatgcgggagaggatgcgcggtcgcgccgatgcggcgtcgattgcggcagagagaggaggaggaggaggagcgacacgcgcgcatctgggacgtccgatctaactcatcagatgattttaccctatagttcaacaaatgtttttactcattactcattcatcatatcacacatctaatggtatagaatcaaaagatgaggtcgatccgacggctctgatcgataacaaatcgcgcaccccatcagtatcgcgcaaaacgcgtcacccgactcgcggcgcagatcgcagactctcgatcagatcgcgctcgcccctcccagacgcgcgcgctgcgctcgccttgcatcgccgccgccgccgctgccggtctccacaccgcgccgccgcccctcacctctccaccgcgccggtctcctctgcagcgctgcccacgattcgcccccgtcgctcacaaatcgtcgccgccgtccccacaccacgccgccgtccctcgcctctccaccgcgccggtctcctccgacaaattgctgcggcgacttcgtcctcgacctccgcctcaaccgccgccgattcctctagatcaggcgccaccaagtcgtcgtccatccctccaccagtcgtgctgccgcgccgccacatccggcgactagcattgtagggaaggacctgattccttctacctccgcgcgctggctgccgccgcctttttccgcacgtctgcacgctggccacccccggcctcccaatcacgccagccgccctggcctccctcctcgcgccactcctccattgctcctctctctgcgctccggcgccgttgtcgtgcctcctccccgcgccgccgccacctcctgctcgctccccgcatcggcgccaccaccgctgccaccatcaagatgtgaacgagaaagagggtcaggcaggttgtgagattgggttgaagtgaaaatgtatggagggtattttggtcagttttaatagtagaatgattttttttcttttctttttgtgaaaccctaaggcgtaatgtaaatagggtcaaacggcatgcttgattttaaaaagcgggatgaaattagcaaactaaaaaatgtaggatcagattggtagttaggcttcaaaacatggtcaaatgagcatttgtccctataactagcctgtggcgcgcaatagatctgtgaaaccattcgagttgaaaacctgctcccctatatttgtgttcataagagagaaaatcgtgctcaaatgacatggcagcttgatctcagccttataggagaagctattttcgttggcggtcctttaggtgcattgccagcgaaaacctcaacatctttgctggtggcccacttaacttggctgccagcgaagataagttttcactggcggtccgaaaccccctacccctccttacgttgtttctgacggttttcgcatatggcacctagcgaaaagtttagtgtgacgccatgaaaaaagggtcgatttacagtgagatgtcaacccaatatttagatgctcatatatatgggaaaatatgctcgttggaagcgtttgtgacgactttaccaatcttaagattggttgatctagtctcaggaagtgataacattatgggccgtacgtgtggcttcagattgggccgctccaaaacccagactctggacggctccgtcacaagtcacgccgccgccgccgccctgcagctccgctcccccggtctccgcgcgtccgccccgacgctccgctggcccttccctcgcttgctcgacgccattgccttccggccactgcctcgtgccttggcctgttgcggctcgtcggcgccctccgccgtccgccacctccgtgcctgcggctccaatgtcttcttcttgcgcgcggacgcctggagggcaggtaataacaaagctcttccttctcccagctcctctccaactccagtggtgctggtgctggtgctggtgctgtggcggtggctctcccacatgtgctccatttgatcttcttctcctctttttttttttttgtcactgaaacatatagcttactgtatttaaagaaaatctctatacattgtagtgggacgggttcagcatcggcaattaatcgtgtctgatagaaattgaaggatgatgaagtttcatggttactttcctttattcatgttttcttctttggcaattatacattgccgactcccactgcttccagtgttgatagttacgccatataccgcttaagcccaacaaaaacatgaaatcattatttatgttgtcaattaattttgaaaaactgttactatgaattattatgccagatttagattttattgctcaaaataaatgcttatggttaatcaatagtacagaccacagatagagagtagtacaagcaaatccaattatcaaaggtttccttaaaaagtggatttcagttgttctaaattgaaacaaggggacttgtaccaggacttcaagatttagatcgtaagaagtggaaccattgatgtttttatcttctttgtttttccattgtgttctggttgttgtaaggttttcaaagaattgaatcaaaatggatgggacatggtatagtgagaaaagttgacacccttcaatggcttcgatttgtcttattagttgtagtactgaacttcgaattttttccacatactcctcatagatttaggaggcgttgatatgatataaagaacaatttagtttgcattcctggttgatttgaaatcattccactgttggttctcatggttgatttgaactgcagtgtttgtgaatacaaaaggtacaaacaattgctcctttgttattattcttcctttctcattctctcgtgcgttctgacaatttggtaaacctatagtcatgtctatgtgtgcatctgttgcagctcaaattattttcatgttatacccccttattacacataaatagtcaaaattttcctactagggctagtatttccgctgttgtcctgagattgacatttgaagtgaaatgatgaaatggacattcacagtcacatgctcaggtggataatttgtaagcatcgcaatgctttagtgctacatagaacaagctttgggcatgaatattgtcactgggagttgacaattgatcttgcatgatgttaggttgttaaaaccccaataatccagataagaaggattttacaggatggtaggatactacaaactacctttgattctgcaaccctgatggatagcatgcctattcccctttgtgatctttgacttattcttcctttacattacattgttttgcattagattgatgtaatatgtatgatggcttttgctaattcagttatttttggtcatacagtgatgcaatggctgtttctttgaggattcattatgcataatggtattctactgcagctatgcttttgaacttgcctaaggcggtaaaaccaattggagtatggttcctttcaggtgcaagggcagcatgcattggtgtagatgtttatcctagtcactttgcatccctattgaaggaatgcaagtctgcaaatacagttcatcaaattcaccaacagataattgcttctggtcttttttctttgcccacaccattattgtcagtctcactaccagcattgccatccgaaccatttatatctccaagatctctgggtactggtgtcgtagcttcttatcttgcttgtggtgctaccgactatgctctcttggtgttggaacgtgttacaccgtcaccagctgtgtggtggaatctacttatccgagaacacatcaaacaaggccgccttgacagtgcaattaatgtctcttgccgcatgctgcgtgctggaactaggccggaccattttactctaccacatgtattaaaagcatgtggagagctaccttcataccgttgtggtagtgcattccatggattgatatgctgcaatggctttgagtccaatgtcttcatatgcaatgcgttggtggcaatgtattcccgttgtggttctttggaggaagccagcatgatctttgatgaaataactcagaggggtattgatgatgttatctcatggaactctattgtttcagcccatgttaaaagtagtaatgcttggactgcattggatctgttttcaaagatgacattgattgtccatgagaagcctacaaatgaaaggtcagacatcattagcattgtcaacatactccctgcatgtggttctctaaaggcagtacctcaaactaaagaagtccatggtaatgctattcgtaatggcacatttccagatgtttttgttggtaatgccctgattgatgcttacgctaagtgtggtttgatggaaaacgcggtaaaggttttcaacatgatggaattcaaagatgtggtttcttggaacgcaatggtggctgggtactcccaaagtggcaactttgaggcagcctttgagcttttcaagaacatgcgcaaggaaaatatcccattagatgtggtaacatggactgctgtaattgcaggctattctcagaggggatgcagccatgaagcactcaatttattccgtcaaatgatattttctgggtccttgccaaattgtgtcacaatcatctctgtgttgtctgcctgcgcttctttgggagcattttctcagggtacggaaattcatgcctactctctaaagaactgtcttctaaccttggataatgattttggtggtgaggatgaggatcttatggtgtacaacgcgctaatagatatgtactcaaagtgcagaagcttcaaagctgcacgctccatatttgatgatatacctctagaggaacgcaatgttgtcacctggactgtcatgatcggggggcatgcacaatatggggactcaaatgatgccctcaagcttttcgtggagatgatttcggaaccatatggagtagccccaaatgcttatacaatttcgtgcattttgatggcttgtgcacatttggcagccatacgtataggtaagcagattcatgcttatgtgcttcgtcatcaccgatatgaatcatctgcatactttgtggcgaactgcctcattgatatgtactcgaagtgtggggatgttgatacagctaggcatgtattcgatagcatgtctcaaaagagtgctatttcttggacatcaatgatgacagggtatggaatgcacggtcgtggtagtgaggccctggacatatttgacaagatgcggaaagcaggctttgttcctgacgatataaccttcctggttgttctttatgcttgtagtcattgtggaatggttgatcaaggtctatcgtactttgacagcatgagtgtagattatggtttgacacctcgggcagagcactatgcctgtgctattgacttgctggcccgctctgggcgattagataaggcatggagaacagttaaggatatgccaatggagcccaccgcagtagtttgggttgcattactgagtgcctgtagagtacattcaaatgttgaacttgctgaacatgctctgaacaaactggtcgagatgaatgctgaaaatgatggatcttacacgcttatctccaacatatatgccactgcagggcggtggaaggatgtagcgaggatcaggcacttgatgaagaaatcaggaattaagaagaggccaggatgcagctgggtccagggtcaaaagggcacagcatctttctttgtcggagatcgatcacacccactat
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| CDS seq | atgcttttgaacttgcctaaggcggtaaaaccaattggagtatggttcctttcaggtgcaagggcagcatgcattggtgtagatgtttatcctagtcactttgcatccctattgaaggaatgcaagtctgcaaatacagttcatcaaattcaccaacagataattgcttctggtcttttttctttgcccacaccattattgtcagtctcactaccagcattgccatccgaaccatttatatctccaagatctctgggtactggtgtcgtagcttcttatcttgcttgtggtgctaccgactatgctctcttggtgttggaacgtgttacaccgtcaccagctgtgtggtggaatctacttatccgagaacacatcaaacaaggccgccttgacagtgcaattaatgtctcttgccgcatgctgcgtgctggaactaggccggaccattttactctaccacatgtattaaaagcatgtggagagctaccttcataccgttgtggtagtgcattccatggattgatatgctgcaatggctttgagtccaatgtcttcatatgcaatgcgttggtggcaatgtattcccgttgtggttctttggaggaagccagcatgatctttgatgaaataactcagaggggtattgatgatgttatctcatggaactctattgtttcagcccatgttaaaagtagtaatgcttggactgcattggatctgttttcaaagatgacattgattgtccatgagaagcctacaaatgaaaggtcagacatcattagcattgtcaacatactccctgcatgtggttctctaaaggcagtacctcaaactaaagaagtccatggtaatgctattcgtaatggcacatttccagatgtttttgttggtaatgccctgattgatgcttacgctaagtgtggtttgatggaaaacgcggtaaaggttttcaacatgatggaattcaaagatgtggtttcttggaacgcaatggtggctgggtactcccaaagtggcaactttgaggcagcctttgagcttttcaagaacatgcgcaaggaaaatatcccattagatgtggtaacatggactgctgtaattgcaggctattctcagaggggatgcagccatgaagcactcaatttattccgtcaaatgatattttctgggtccttgccaaattgtgtcacaatcatctctgtgttgtctgcctgcgcttctttgggagcattttctcagggtacggaaattcatgcctactctctaaagaactgtcttctaaccttggataatgattttggtggtgaggatgaggatcttatggtgtacaacgcgctaatagatatgtactcaaagtgcagaagcttcaaagctgcacgctccatatttgatgatatacctctagaggaacgcaatgttgtcacctggactgtcatgatcggggggcatgcacaatatggggactcaaatgatgccctcaagcttttcgtggagatgatttcggaaccatatggagtagccccaaatgcttatacaatttcgtgcattttgatggcttgtgcacatttggcagccatacgtataggtaagcagattcatgcttatgtgcttcgtcatcaccgatatgaatcatctgcatactttgtggcgaactgcctcattgatatgtactcgaagtgtggggatgttgatacagctaggcatgtattcgatagcatgtctcaaaagagtgctatttcttggacatcaatgatgacagggtatggaatgcacggtcgtggtagtgaggccctggacatatttgacaagatgcggaaagcaggctttgttcctgacgatataaccttcctggttgttctttatgcttgtagtcattgtggaatggttgatcaaggtctatcgtactttgacagcatgagtgtagattatggtttgacacctcgggcagagcactatgcctgtgctattgacttgctggcccgctctgggcgattagataaggcatggagaacagttaaggatatgccaatggagcccaccgcagtagtttgggttgcattactgagtgcctgtagagtacattcaaatgttgaacttgctgaacatgctctgaacaaactggtcgagatgaatgctgaaaatgatggatcttacacgcttatctccaacatatatgccactgcagggcggtggaaggatgtagcgaggatcaggcacttgatgaagaaatcaggaattaagaagaggccaggatgcagctgggtccagggtcaaaagggcacagcatctttctttgtcggagatcgatcacacccacta
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| Protein seq | MLLNLPKAVKPIGVWFLSGARAACIGVDVYPSHFASLLKECKSANTVHQIHQQIIASGLFSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSVDYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL |
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| Function | Pentatricopeptide repeat-containing protein At5g16860 [UniProtKB/Swiss-Prot:Q9LFL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004450 | OsLiXu_04g0004450.01 | Chr04 | 7656306 | 7666747 | + | NAM | ||
| CDS seq | atgcttttgaacttgcctaaggcggtaaaaccaattggagtatggttcctttcaggtgcaagggcagcatgcattggtgtagatgtttatcctagtcactttgcatccctattgaaggaatgcaagtctgcaaatacagttcatcaaattcaccaacagataattgcttctggtcttttttctttgcccacaccattattgtcagtctcactaccagcattgccatccgaaccatttatatctccaagatctctgggtactggtgtcgtagcttcttatcttgcttgtggtgctaccgactatgctctcttggtgttggaacgtgttacaccgtcaccagctgtgtggtggaatctacttatccgagaacacatcaaacaaggccgccttgacagtgcaattaatgtctcttgccgcatgctgcgtgctggaactaggccggaccattttactctaccacatgtattaaaagcatgtggagagctaccttcataccgttgtggtagtgcattccatggattgatatgctgcaatggctttgagtccaatgtcttcatatgcaatgcgttggtggcaatgtattcccgttgtggttctttggaggaagccagcatgatctttgatgaaataactcagaggggtattgatgatgttatctcatggaactctattgtttcagcccatgttaaaagtagtaatgcttggactgcattggatctgttttcaaagatgacattgattgtccatgagaagcctacaaatgaaaggtcagacatcattagcattgtcaacatactccctgcatgtggttctctaaaggcagtacctcaaactaaagaagtccatggtaatgctattcgtaatggcacatttccagatgtttttgttggtaatgccctgattgatgcttacgctaagtgtggtttgatggaaaacgcggtaaaggttttcaacatgatggaattcaaagatgtggtttcttggaacgcaatggtggctgggtactcccaaagtggcaactttgaggcagcctttgagcttttcaagaacatgcgcaaggaaaatatcccattagatgtggtaacatggactgctgtaattgcaggctattctcagaggggatgcagccatgaagcactcaatttattccgtcaaatgatattttctgggtccttgccaaattgtgtcacaatcatctctgtgttgtctgcctgcgcttctttgggagcattttctcagggtacggaaattcatgcctactctctaaagaactgtcttctaaccttggataatgattttggtggtgaggatgaggatcttatggtgtacaacgcgctaatagatatgtactcaaagtgcagaagcttcaaagctgcacgctccatatttgatgatatacctctagaggaacgcaatgttgtcacctggactgtcatgatcggggggcatgcacaatatggggactcaaatgatgccctcaagcttttcgtggagatgatttcggaaccatatggagtagccccaaatgcttatacaatttcgtgcattttgatggcttgtgcacatttggcagccatacgtataggtaagcagattcatgcttatgtgcttcgtcatcaccgatatgaatcatctgcatactttgtggcgaactgcctcattgatatgtactcgaagtgtggggatgttgatacagctaggcatgtattcgatagcatgtctcaaaagagtgctatttcttggacatcaatgatgacagggtatggaatgcacggtcgtggtagtgaggccctggacatatttgacaagatgcggaaagcaggctttgttcctgacgatataaccttcctggttgttctttatgcttgtagtcattgtggaatggttgatcaaggtctatcgtactttgacagcatgagtgtagattatggtttgacacctcgggcagagcactatgcctgtgctattgacttgctggcccgctctgggcgattagataaggcatggagaacagttaaggatatgccaatggagcccaccgcagtagtttgggttgcattactgagtgcctgtagagtacattcaaatgttgaacttgctgaacatgctctgaacaaactggtcgagatgaatgctgaaaatgatggatcttacacgcttatctccaacatatatgccactgcagggcggtggaaggatgtagcgaggatcaggcacttgatgaagaaatcaggaattaagaagaggccaggatgcagctgggtccagggtcaaaagggcacagcatctttctttgtcggagatcgatcacacccacta
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| Protein seq | MLLNLPKAVKPIGVWFLSGARAACIGVDVYPSHFASLLKECKSANTVHQIHQQIIASGLFSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSVDYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004450 | OsLiXu_04g0004450.02 | Chr04 | 7656306 | 7658256 | + | NAM | ||
| CDS seq | atgtctctcaaggttatatctgaaattctgagcatgaccgtcgcccacggcgccggcgacgattcaccgccgacgtcatcgtccaacaccgtgacttggcccttcgtcctccatgtccaccgcgccctcgccgccattcataagaacaacattgcagcacccaatctgtggcaccccatcgacacatacgaccgcgtcgccctggctcatcgtggctaa
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| Protein seq | MSLKVISEILSMTVAHGAGDDSPPTSSSNTVTWPFVLHVHRALAAIHKNNIAAPNLWHPIDTYDRVALAHRG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.565153 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0218100 | RBH | 1.716835 | 1.716380 | 4.884757 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14130 | RBH | 1.176248 | 1.089690 | 1.272469 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0218100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004540 | RBH | 0.767107 | 7.085005 | 8.837307 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005200 | RBH | 0.164408 | 1.192615 | 4.607664 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004760 | RBH | 0.789720 | 2.986150 | 11.800208 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004750 | RBH | 0.199648 | 0.295084 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004650 | RBH | 5.203103 | 10.971343 | 18.948273 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0112900 | RBH | 3.3480395 | 11.8399375 | 8.9614355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004740 | RBH | 0.250290 | 0.877884 | 2.236510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0120900 | RBH | 4.2855745 | 14.656107 | 12.5276515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004500 | RBH | 0.333794 | 0.400960 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004810 | RBH | 0.876180 | 10.326959 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004570 | RBH | 4.387198 | 15.636606 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0016430 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004720 | RBH | 0.218898 | 3.194929 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004870 | RBH | 0.919815 | 4.944508 | 3.542656 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004580 | RBH | 1.414393 | 11.363896 | 4.074650 |
