Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0035920 | OGI:03089550 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:34936285-34938473 | ||||||||
| Gene Symbol | LRK7, OsLRk7, LRk7 | ||||||||||
| DNA seq | agacgcgacgcgcgcgcgcactggggagagtgtctttcttgctgcaatggctgagaagaagggggtgggttcacttcttcccgggctcgccgtcgtcctcgttggcttcgtggtcggcggcgccgggagcgacgaccggttcgtctacgccggcttcaccggcgcgccgctcgcgttggacgggacggcggccatcacggcgagcgggctgctcgagctgaccaacggcacggcgcagctcaaggcgcacgcggtgcacccggcggcgctgcgcttccacggcggcggcggcggcgcgcagcgcggtgcgctccttctcgacgtcgttcgtgttcgggatcatcccgccttactccgacctgagcggccatggcatcgtcttcttcgtcgggaagaataacttcagcgccgcgctgccgagccagtacctgggcctcctcaacagcaccaacaacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccgagttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaagtccgtcgccgtgaacaccgccggctactacgacgacaagaccggcgccttccacgacctgtccctgatcagcggcaaggccatgcaggtctgggtggactacgacggcgccaccacgcagatcagcgtgttcatggctcctctcaagatgtccaagcctacgaggccactggtgtccgccgtgtacaacctctcacaggtgctcgtcgatccggtgtacgtcggcttctcgtcggcgacgggcacggtgaggtcacgccactacgttcttggctggagcttcgccatggacgggcctgctcctgccattgacatcgccatgctgcccaagctgccgttctatggcaccaaggcacggtccaaggtattggatatcgttctgcccatagcaaccgcggtgttcgtcctcggtgtggttgtagtggtggttttgcttgtcaggaggagattgaagtatgctgagctgcgagaagactgggaggttgaatttgggccgcaccgattcacatacaaggacttgttccgagcgacggaagggttcaaggccaagatgttgctgggtataggaggatttgggagggtgtacaagggagttctaccgaaatccaatatggaggttgcggtaaagaaagtgtcccatgaatcgaggcaaggcataaaggagttcattgcagaggtggtgagtattgggcgtcttcggcatcggaacctcgtgcaattattaggttattgccggcgaaaaggtgaacttattttggtttatgactacatgccaaacggtagtcttgataaatacctatatgatgataagaacaagcctactctggattggactcaaaggttccgcatcataaaaggggtagcatctggcctactgtatattcatgaggattgggagcaagttgtcattcatcgagatatcaaagcaagtaacgttcttcttgatagtgagatgaatggacggttaggcgactttggtctagcaagattatatgatcatggtgctgatccacaaacaacacatgtggttggcacaatgggatatctagccccagaattagcacgatcaggaaaggcatcccctctaaccgatgtttttgcatttggtgcctttctcctcgaagttacatgtggacgaagacctgttgagcaagccatgcaagacaaccaagtcatgttggtcgattgggtgcttgagcattggcagaaaggatcacttacaaaggtaattgatgcaaggctccatggcaactacaacattgatgaggcaatcctagtgttgaagttagggttgttgtgttcacatccattgcccggtgcaaggcctagcatgcgacaggttgtgcagtatcttgaaggtgacatgcccttccctgagctaacgccaacacatctaagctttagcatgctagctcttatgcaaaatgaaggctttgactcttttgtcatgtcaacatcgcttccatcagagacgatgatgaccattggcacgatgagtggcctctctggaggaagatagtacagtagcacctacttgttagtttttttgtcctacgaaaagttttatttccttggtgtaaatgtttgtaatatttagagtaaattacaattcattgtttaccttttg
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| CDS seq | atggctgagaagaagggggtgggttcacttcttcccgggctcgccgtcgtcctcgttggcttcgtggtcggcggcgccgggagcgacgaccggttcgtctacgccggcttcaccggcgcgccgctcgcgttggacgggacggcggccatcacggcgagcgggctgctcgagctgaccaacggcacggcgcagctcaaggcgcacgcggtgcacccggcggcgctgcgcttccacggcggcggcggcggcgcgcagcgcggtgcgctccttctcgacaataacttcagcgccgcgctgccgagccagtacctgggcctcctcaacagcaccaacaacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccgagttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaagtccgtcgccgtgaacaccgccggctactacgacgacaagaccggcgccttccacgacctgtccctgatcagcggcaaggccatgcaggtctgggtggactacgacggcgccaccacgcagatcagcgtgttcatggctcctctcaagatgtccaagcctacgaggccactggtgtccgccgtgtacaacctctcacaggtgctcgtcgatccggtgtacgtcggcttctcgtcggcgacgggcacggtgaggtcacgccactacgttcttggctggagcttcgccatggacgggcctgctcctgccattgacatcgccatgctgcccaagctgccgttctatggcaccaaggcacggtccaaggtattggatatcgttctgcccatagcaaccgcggtgttcgtcctcggtgtggttgtagtggtggttttgcttgtcaggaggagattgaagtatgctgagctgcgagaagactgggaggttgaatttgggccgcaccgattcacatacaaggacttgttccgagcgacggaagggttcaaggccaagatgttgctgggtataggaggatttgggagggtgtacaagggagttctaccgaaatccaatatggaggttgcggtaaagaaagtgtcccatgaatcgaggcaaggcataaaggagttcattgcagaggtggtgagtattgggcgtcttcggcatcggaacctcgtgcaattattaggttattgccggcgaaaaggtgaacttattttggtttatgactacatgccaaacggtagtcttgataaatacctatatgatgataagaacaagcctactctggattggactcaaaggttccgcatcataaaaggggtagcatctggcctactgtatattcatgaggattgggagcaagttgtcattcatcgagatatcaaagcaagtaacgttcttcttgatagtgagatgaatggacggttaggcgactttggtctagcaagattatatgatcatggtgctgatccacaaacaacacatgtggttggcacaatgggatatctagccccagaattagcacgatcaggaaaggcatcccctctaaccgatgtttttgcatttggtgcctttctcctcgaagttacatgtggacgaagacctgttgagcaagccatgcaagacaaccaagtcatgttggtcgattgggtgcttgagcattggcagaaaggatcacttacaaaggtaattgatgcaaggctccatggcaactacaacattgatgaggcaatcctagtgttgaagttagggttgttgtgttcacatccattgcccggtgcaaggcctagcatgcgacaggttgtgcagtatcttgaaggtgacatgcccttccctgagctaacgccaacacatctaagctttagcatgctagctcttatgcaaaatgaaggctttgactcttttgtcatgtcaacatcgcttccatcagagacgatgatgaccattggcacgatgagtggcctctctggaggaagatag
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| Protein seq | MAEKKGVGSLLPGLAVVLVGFVVGGAGSDDRFVYAGFTGAPLALDGTAAITASGLLELTNGTAQLKAHAVHPAALRFHGGGGGAQRGALLLDNNFSAALPSQYLGLLNSTNNGNTTNHIFGVELDTIVSSEFQDPNDNHVGIDINSLKSVAVNTAGYYDDKTGAFHDLSLISGKAMQVWVDYDGATTQISVFMAPLKMSKPTRPLVSAVYNLSQVLVDPVYVGFSSATGTVRSRHYVLGWSFAMDGPAPAIDIAMLPKLPFYGTKARSKVLDIVLPIATAVFVLGVVVVVVLLVRRRLKYAELREDWEVEFGPHRFTYKDLFRATEGFKAKMLLGIGGFGRVYKGVLPKSNMEVAVKKVSHESRQGIKEFIAEVVSIGRLRHRNLVQLLGYCRRKGELILVYDYMPNGSLDKYLYDDKNKPTLDWTQRFRIIKGVASGLLYIHEDWEQVVIHRDIKASNVLLDSEMNGRLGDFGLARLYDHGADPQTTHVVGTMGYLAPELARSGKASPLTDVFAFGAFLLEVTCGRRPVEQAMQDNQVMLVDWVLEHWQKGSLTKVIDARLHGNYNIDEAILVLKLGLLCSHPLPGARPSMRQVVQYLEGDMPFPELTPTHLSFSMLALMQNEGFDSFVMSTSLPSETMMTIGTMSGLSGGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0035920 | OsLiXu_03g0035920.01 | Chr03 | 34936331 | 34938365 | + | NAM | ||
| CDS seq | atggctgagaagaagggggtgggttcacttcttcccgggctcgccgtcgtcctcgttggcttcgtggtcggcggcgccgggagcgacgaccggttcgtctacgccggcttcaccggcgcgccgctcgcgttggacgggacggcggccatcacggcgagcgggctgctcgagctgaccaacggcacggcgcagctcaaggcgcacgcggtgcacccggcggcgctgcgcttccacggcggcggcggcggcgcgcagcgcggtgcgctccttctcgacaataacttcagcgccgcgctgccgagccagtacctgggcctcctcaacagcaccaacaacggcaacaccaccaaccacatcttcggcgtcgagctcgacaccatcgtcagctccgagttccaggatcctaacgacaaccacgtcggcatcgacatcaacagcctcaagtccgtcgccgtgaacaccgccggctactacgacgacaagaccggcgccttccacgacctgtccctgatcagcggcaaggccatgcaggtctgggtggactacgacggcgccaccacgcagatcagcgtgttcatggctcctctcaagatgtccaagcctacgaggccactggtgtccgccgtgtacaacctctcacaggtgctcgtcgatccggtgtacgtcggcttctcgtcggcgacgggcacggtgaggtcacgccactacgttcttggctggagcttcgccatggacgggcctgctcctgccattgacatcgccatgctgcccaagctgccgttctatggcaccaaggcacggtccaaggtattggatatcgttctgcccatagcaaccgcggtgttcgtcctcggtgtggttgtagtggtggttttgcttgtcaggaggagattgaagtatgctgagctgcgagaagactgggaggttgaatttgggccgcaccgattcacatacaaggacttgttccgagcgacggaagggttcaaggccaagatgttgctgggtataggaggatttgggagggtgtacaagggagttctaccgaaatccaatatggaggttgcggtaaagaaagtgtcccatgaatcgaggcaaggcataaaggagttcattgcagaggtggtgagtattgggcgtcttcggcatcggaacctcgtgcaattattaggttattgccggcgaaaaggtgaacttattttggtttatgactacatgccaaacggtagtcttgataaatacctatatgatgataagaacaagcctactctggattggactcaaaggttccgcatcataaaaggggtagcatctggcctactgtatattcatgaggattgggagcaagttgtcattcatcgagatatcaaagcaagtaacgttcttcttgatagtgagatgaatggacggttaggcgactttggtctagcaagattatatgatcatggtgctgatccacaaacaacacatgtggttggcacaatgggatatctagccccagaattagcacgatcaggaaaggcatcccctctaaccgatgtttttgcatttggtgcctttctcctcgaagttacatgtggacgaagacctgttgagcaagccatgcaagacaaccaagtcatgttggtcgattgggtgcttgagcattggcagaaaggatcacttacaaaggtaattgatgcaaggctccatggcaactacaacattgatgaggcaatcctagtgttgaagttagggttgttgtgttcacatccattgcccggtgcaaggcctagcatgcgacaggttgtgcagtatcttgaaggtgacatgcccttccctgagctaacgccaacacatctaagctttagcatgctagctcttatgcaaaatgaaggctttgactcttttgtcatgtcaacatcgcttccatcagagacgatgatgaccattggcacgatgagtggcctctctggaggaagatag
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| Protein seq | MAEKKGVGSLLPGLAVVLVGFVVGGAGSDDRFVYAGFTGAPLALDGTAAITASGLLELTNGTAQLKAHAVHPAALRFHGGGGGAQRGALLLDNNFSAALPSQYLGLLNSTNNGNTTNHIFGVELDTIVSSEFQDPNDNHVGIDINSLKSVAVNTAGYYDDKTGAFHDLSLISGKAMQVWVDYDGATTQISVFMAPLKMSKPTRPLVSAVYNLSQVLVDPVYVGFSSATGTVRSRHYVLGWSFAMDGPAPAIDIAMLPKLPFYGTKARSKVLDIVLPIATAVFVLGVVVVVVLLVRRRLKYAELREDWEVEFGPHRFTYKDLFRATEGFKAKMLLGIGGFGRVYKGVLPKSNMEVAVKKVSHESRQGIKEFIAEVVSIGRLRHRNLVQLLGYCRRKGELILVYDYMPNGSLDKYLYDDKNKPTLDWTQRFRIIKGVASGLLYIHEDWEQVVIHRDIKASNVLLDSEMNGRLGDFGLARLYDHGADPQTTHVVGTMGYLAPELARSGKASPLTDVFAFGAFLLEVTCGRRPVEQAMQDNQVMLVDWVLEHWQKGSLTKVIDARLHGNYNIDEAILVLKLGLLCSHPLPGARPSMRQVVQYLEGDMPFPELTPTHLSFSMLALMQNEGFDSFVMSTSLPSETMMTIGTMSGLSGGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0035920 | OsLiXu_03g0035920.02 | Chr03 | 34936285 | 34938473 | + | IsoSeq | ||
| CDS seq | acgcgacgcgcgcgcgcactggggagagtgtctttcttgctgcaatggctgagaagaagggggtgggttcacttcttcccgggctcgccgtcgtcctcgttggcttcgtggtcggcggcgccgggagcgacgaccggttcgtctacgccggcttcaccggcgcgccgctcgcgttggacgggacggcggccatcacggcgagcgggctgctcg
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| Protein seq | TRRARALGRVSFLLQWLRRRGWVHFFPGSPSSSLASWSAAPGATTGSSTPASPARRSRWTGRRPSRRAGCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.954567 | 0.436231 | 1.204192 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0772600 | RBH | 4.304994 | 4.388740 | 2.941045 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56160 | RBH | 2.755511 | 2.818661 | 0.712173 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0772600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036340 | RBH | 0.335350 | 0.0 | 1.399398 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036010 | RBH | 0.116522 | 0.0 | 1.513016 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036090 | RBH | 2.094097 | 1.848644 | 4.522913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036390 | RBH | 0.122710 | 0.050960 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035880 | RBH | 5.083251 | 0.0 | 11.462232 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0545300 | RBH | 7.6153695 | 19.2570145 | 0.0470475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035680 | RBH | 0.0 | 0.067270 | 0.593011 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0545900 | RBH | 3.127373 | 11.5614585 | 0.0050365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036160 | RBH | 0.229543 | 0.059739 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036180 | RBH | 0.627731 | 2.926275 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035830 | RBH | 6.400653 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0014470 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035870 | RBH | 0.464563 | 1.704362 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035700 | RBH | 2.627079 | 0.380587 | 0.758683 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035490 | RBH | 3.347496 | 13.739850 | 0.496435 |
