Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0033300 | OGI:03083950 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:32943124-32949057 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatctcaggatccagatcaacttgtatggcatggcatccatgtgaggttgctggttacttccaagtgagatgcactggagcgcagctttggagtctggacagagagcagaggagcacaggatcaagtgtacggactgatggggtttaattatctatggttgattatacttgattgatcagcaatgatcccaatgacaatgggttttgtttgtacagtttactgctgcaacaactactcttgctagataaagaacaaagataccatcataccaacagacactgcacgtaatcagtcatatgaaataaccaacccttaaggccgaatcaaacaaaatgcaagaaacagcatgcaacggcagtatatataagggtgactgaataaaacatttgttcagtatatatacatgaaatgtggttttgactgaatccgctgtatattggcgtgatctcaacatataactccaccatacgccaaccataagtgatgtatactcaatgcaaaggactactgctgtagagcatattgcaaaggagtacatgtgcatcggtgatgatgataattatttgatgcactaaagtttttaatcatactctcgatctagcgctgcaacctttccaggataaatagacaaatctaagctgctacttgattggtactgatgtcgattaattccaaacagccaaaagaaataccttagagcaaataatctgcgatccacgcttgaattctgatcatctaatgtaagattagggcattagttctccagtaagaaaattaggaatattaactgtaggataataaagaaagacagcaatagggtacgagaactcagcgcgcagatccgtttctttatctttctagagtgtcagcgtgtgtgcagttgctcgggcaagactgctattgtgtttcggcgtccaggttaggcaccggcaaagggcagcgtccacatgaaaacaacaggacgctacatgaccacaacaaccagcttattaataccggaaactctaatgcgcgattgatcgctaccatgatcgggtagcaatcgcccaccctcccccctccctccctccacgttttctttttctggcaccgcattactttcctattttagtaaatttatgcacctaaagtttatacacctaaagtttatagacccaaagtttataaatcaaaagtttatatatccgattcaaatttaaatttgaattcaaatatatagtatttctatacatctaaagtttatacacctaaagtttatagacccaaagtttataaatcaaaattttatatacccgattcaaatttgaatttgaaatatattcaattcaaatttgaatttgaattcaaatattttttatatatagtatttagtttcatctaaagtttatacacctaaagtttatagacccaaagtttataagtcaaaagtttatatacccaattcaaatttgaattatatccgattcaaatttgaatttgaattcaaatatttttatatatagtatttctatacatctaaagtttatacacctaaagtttatagacccaaagtttataactcaaaagtttacatacccgattcaaatttgaatttgaattcaaatattagtttatagacccaaagtttataagtcaaaaatttacataaccgtttcaattctgaatttaaatttaaatatttatgatgtagtaggaagagaaaaagaaaaggaggaaggggggagaggagggagcgaccatataggggaggggtagacgatcacccgcgcattaggcgtaccctattaatacttataatttaatttctaggatgcttagacaaaaaaaatgtttcttatcctgctcagattaaaaaaaaatggacagaatcgcaaacaagaagttctgtggcatccttacatagcccaaacacattactcaacgacaaacacacgagtaaaattgacacgttgcattgattgacaatcaaatgaacatatctcaacggcacagaacaatcacatgctacaatggatgataatgaagggaagtccagacataaggcatcaactgatacacattatgcagccagcgcacacactacacgtaatgtcaggtaactccgatggcatactacaagacagcgtacataataacatgaaggagttaacagagtacgatacagcacattacaccctaggaggataagctcggatctcaatcagttcatagtccctgcctaaaatacggataggatgctgttgcttcacaagaggaagggggggggggggggggggatcacggcgagcctatggtgcatccaccttgacaagcgtggtactcggcgcctccggggtagctggtaaatactgaagccagtctttggcgcagacgagcgcctccacaatttctggacgcaatgagcttctgtagtcatcaagcatgcgagttcctgttccagcagagaaaatagagttgccgctgctcaccatcgacatcggaatggccaagatatcccgggccatccttgagagagtagggaacttgagagtgttgagcttccaccagttcagaatgtcaaattcctggatgcgcggagtgagggactcatccaggtactgttccagttcagattttgttggctggcttgtagctatctcagaaaggtacatatcaaagtccacaagtccatcgccggtcgaaggagcagttgcttgagtaccattctcgctagcaggtgcattattaccgtccccttgctcaacataagccggcgtcaaggggaggggttgtgcaacatactccttgtaaagctcatgaacagcatcatccaccaccttaacatactttgcagcttcaacaccataaattttcgagtagctgaactcaacaagcttcatcttgaagcgcggatccatcacaacagcaatagctaacacaaggttgcaatctttccagtacttgtcaaacctctcgtgcatatccttggcaatgctgctgaaaacagggtcttcatgccctgtggcatttgacagctcgagctgaagtttccatgcctcatggaaaaagagatttgaagttggatttgctgcagccatgatgctatgtgctgagtcatacaatagcttcaagtaattgcaggcagcctcaacttttttccagtcctcagcggacggtgcctcattgtagttatcatcacttgtctcaagagtagaaaaggcctgcttataatccaaggcagccagcagcatgagataggtagtgttccactgtgtcgtaacatccagacaaagggtcttggtacttgggatctctagctgcagagcaatctctgcaaacttctcctcacggctaggagaagcttttatgaacttaatgctttcacggatattatagatgacaccatgaattgaagcaataacatcctgagcaactgcattcaggatatgggcataacaccttacaacaaacagttggcccttgagcatgaggttgttcttgttggagagataatccctcagattcgcactatatatatcatgtgatgagcaatcattgtccaatgtgatggtgaatagtttgtccttcatattccagtctgaaaggcttgtactaatagcttcactaagtgcattctctgaatgaggagaagacaccatcatgaagtttagcattcttcgatgtatcttccactcagagtcaataaactgcccagcaagtgaaacatagccaagagtttggctagttgtccacagtccaatagtaaggctaatccttccaggcatagtgctgaatgcttgcatgaggttttccttttctttctggtaaacagcatacacctccccctccattgtctcaacatctacaaccctgaaacgtggctgcagactgtcaataaaggtagtgaaggctggctgttgaacaatgtgaagtggatagtcatgcaaaatgatcatcttcgccagatatgaacaactgcggtcttgatcaaaagcagcatttgcataaccagtatatctgtaacgcctcttagacgggcgctccacagtgccctcgccatcattgtcagtccctacagctggagtcagtgctagcttgtgctcttggttcttaattttaggacatgaacccaaggtaatgtgcctcttgagatggctagtacccgcaatttttgaaccagagctgtaagcaaaagtttgcttacacagtttgcagcacgcccgtgtagcccctccagagacagcttcaatagtgaagtgctcccacactagagacttcttcctacggcgccttgatgttggaggggtactcatctcagcactgaccaatctatttacttggacctcgtcaccttgagctaagtcctccgcaaggaccaattcatcaccctgaacttcctcagcatgagcttcctcattgcttgggacaatctcataaccttgaaccatctggaagtcgttgccagtttcctcagtcatgcttcttggctagtagctagaactcacaaaatctgtcaaatagtaacatggtaacagcagaagtcagtataacaatcatttggccagaaaaaaaactcgaaagtgacttatacacggacaataacaaaccagtatcactacagtggcctatttaacaaaacaggaagataaaagaaagacaacatgatttcttgataacaaattagcaaaccaggttatagtaactggggcacagatgaaataacaaaactataaatgtcatccaggaatattatggaaacttagaatggggaacatatcttctcactcctcagtaaaaatgcttaaagtacacaatttaaattaaattttatttgccaccgaaagtgcaaacttcatgagcagaaccatgtgctacgttgttttcccgacaaatttcaagaaaagaaggggtatcacatgcaaatttaattggaccagaatgactcgtgcaaacttagttggtaactttactccctactaggagtgatttcagcaactccagataagtttaagagtcatatcttccttattatcctcatgcaatgcaagccaacccattcttgttcttcgtaggcacgaactcaaaataatcggtgagaaggaagtaattaacaacctatgtattgcttgagttggcgggacacagttacacaggacttgaaaatcaagctcacctagttagctaaacagcggcaagaggctagtttaagatgctaagctagtactacaaagttgcaagaacctatctgaagaggtagctagtggtagagctttctttggacaaagaaagataaatttctccgcacgactacacaaagcacatattcagattcaattatctaagcgcaccaagtccaacatcacatatctcccccaaaacgaacgaatcaaaagtcgccctctctccggatctcccatcccccccacggtgaaattcatgcgcaaaaactcgacatctcagcgagctccgacgatttccaggcaggccgcgcttccccccgacaaagaatccctaacccaacaacaacaacaatgtagccagcacagcagcaagcagcagtggattcgcgaggagaaatcggtgacaaattgggcctggataacgggcctccctcccaaatcccgatcgaaaaaaagaagaagaaccgcacgaaaagctccaagcacgcgcagatctggaaacggaattcaaaccccccaccccccgaccacgagacctcgcgaggcaggaagaagagaagagatggagagaggagcttacacgaggaggaggagagggatggtggtggcagatccgcgcgcgggcggggctcgctcgctagggctcggcccaagaagctccaaggccggggcgagcggcgaagcagatctggtagtaggtgcaggggagaggaggacgagatggggggaagaaaatttgcctcgtttgggtgcgggttttccggtggataggg
More
|
||||||||||
| CDS seq | atgactgaggaaactggcaacgacttccagatggttcaaggttatgagattgtcccaagcaatgaggaagctcatgctgaggaagttcagggtgatgaattggtccttgcggaggacttagctcaagactccaaagctgcgctccagtgcatctcacttggaagtaaccagcaacctcacatggatgccatgccatacaagttgatctggatcctgagatga |
||||||||||
| Protein seq | MTEETGNDFQMVQGYEIVPSNEEAHAEEVQGDELVLAEDLAQDSKAALQCISLGSNQQPHMDAMPYKLIWILR |
||||||||||
| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0033300 | OsLiXu_03g0033300.01 | Chr03 | 32943124 | 32949057 | - | NAM | ||
| CDS seq | atgactgaggaaactggcaacgacttccagatggttcaaggttatgagattgtcccaagcaatgaggaagctcatgctgaggaagttcagggtgatgaattggtccttgcggaggacttagctcaagactccaaagctgcgctccagtgcatctcacttggaagtaaccagcaacctcacatggatgccatgccatacaagttgatctggatcctgagatga
More
|
|||||||
| Protein seq | MTEETGNDFQMVQGYEIVPSNEEAHAEEVQGDELVLAEDLAQDSKAALQCISLGSNQQPHMDAMPYKLIWILR |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0033300 | OsLiXu_03g0033300.02 | Chr03 | 32945061 | 32948984 | - | IsoSeq | ||
| CDS seq | atgactacagaagctcattgcgtccagaaattgtggaggcgctcgtctgcgccaaagactggcttcagtatttaccagctaccccggaggcgccgagtaccacgcttgtcaaggtggatgcaccataggctcgccgtgatcccccccccccccccccccttcctc |
|||||||
| Protein seq | MTTEAHCVQKLWRRSSAPKTGFSIYQLPRRRRVPRLSRWMHHRLAVIPPPPPPFL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.284916 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0733400 | SBH | 3.025788 | 1.375416 | 6.162885 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52310 | SBH | 1.384967 | 0.640447 | 1.144753 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0733400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0512100 | SBH | 10.659963 | 9.832671 | 20.1603985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033070 | RBH | 0.398190 | 0.936633 | 1.682017 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0512700 | SBH | 16.5501385 | 11.4000565 | 41.9489725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033300 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033260 | RBH | 1.532031 | 1.029847 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033270 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
