Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g52310 | OGI:03083950 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:30039049-30042858 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAACGACAAACACACGAGTAAAATTGACACGTTGCATTGATTGACAATCAAATGAACATATCTCAACGGCACAGAACAATCACATGCTACAATGGATGATAATGAAGGGAAGTCCAGACATAAGGCATCAACTGATACACATTATGCAGCCAGCGCACACACTACACGTAATGTCAGGTAACTCCGATGGCATACTACAAGACAAAGCGTACATAATAACATGAAGGAGTTAACAGAGTACGATACAGCACATTACACCCTAGGAAGATAAGCTCGGATCTCAATCAGTTCATAGTCCCTGCCTAAAATACGGATAGGATGCTGTTGCTTCACAAGAGGAAGGGGGGGAGGGGGGGGGATCACGGCGAGCCTATGGTGCATCCACCTTGACAAGCGTGGTACTCGGCGCCTCCGGGGTAGCTGGTAAATACTGAAGCCAGTCTTTGGCGCAGACGAGCGCCTCCACAATTTCTGGACGCAATGAGCTTCTGTAGTCATCAAGCATGCGAGTTCCTGTTCCAGCAGAGAAAATAGAGTTGCCGCTGCTCACCATCGACATCGGAATGGCCAAGATATCCCGGGCCATCCTTGAGAGAGTAGGGAACTTGAGAGTGTTGAGCTTCCACCAGTTCAGAATGTCAAATTCCTGGATGCGCGGAGTGAGGGACTCATCCAGGTACTGTTCCAGTTCAGATTTTGTTGGCTGGCTTGTAGCTATCTCAGAAAGGTACATATCAAAGTCCACAAGTCCATCGCCGGTCGAAGGAGCAGTTGCTTGAGTACCATTCTCGCTAGCAGGTGCATTATTACCGTCCCCTTGCTCAACATAAGCCGGCGTCAAGGGGAGGGGTTGTGCAACATACTCCTTGTAAAGCTCATGAACAGCATCATCCACCACCTTAACATACTTTGCAGCTTCAACACCATAAATTTTCGAGTAGCTGAACTCAACAAGCTTCATCTTGAAGCGCGGATCCATCACAACAGCAATAGCTAACACAAGGTTGCAATCTTTCCAGTACTTGTCAAACCTCTCGTGCATATCCTTGGCAATGCTGCTGAAAACAGGGTCTTCATGCCCTGTGGCATTTGACAGCTCGAGCTGAAGTTTCCATGCCTCATGGAAAAAGAGATTTGAAGTTGGATTTGCTGCAGCCATGATGCTATGTGCTGAGTCATACAATAGCTTCAAGTAATTGCAGGCAGCCTCAACTTTTTTCCAGTCCTCAGCGGACGGTGCCTCATTGTAGTTATCATCACTTGTCTCAAGAGTAGAAAAGGCCTGCTTATAATCCAAGGCAGCCAGCAGCATGAGATAGGTAGTGTTCCACTGTGTCGTAACATCCAGACAAAGGGTCTTGGTACTTGGGATCTCTAGCTGCAGAGCAATCTCTGCAAACTTCTCCTCACGGCTAGGAGAAGCTTTTATGAACTTAATGCTTTCACGGATATTATAGATGACACCATGAATTGAAGCAATAACATCCTGAGCAACTGCATTCAGGATATGGGCATAACACCTTACAACAAACAGTTGGCCCTTGAGCATGAGGTTGTTCTTGTTGGAGAGATAATCCCTCAGATTCGCACTATATATATCATGTGATGAGCAATCATTGTCCAATGTGATGGTGAATAGTTTGTCCTTCATATTCCAGTCTGAAAGGCTTGTACTAATAGCTTCACTAAGTGCATTCTCTGAATGAGGAGAAGACACCATCATGAAGTTTAGCATTCTTCGATGTATCTTCCACTCAGAGTCAATAAACTGCCCAGCAAGTGAAACATAGCCAAGAGTTTGGCTAGTTGTCCACAATCCAATAGTGAGGCTAATCCTTCCAGGCATAGTGCTGAATGCTTGCATGAGGTTTTCCTTTTCTTTCTGGTAAACAGCATACACCTCCCCCTCCATTGTCTCAACATCTACAACCCTGAAACGTGGCTGCAGACTGTCAATAAAGGTAGTGAAGGCTGGCTGTTGAACAATGTGAAGTGGATAGTCATGCAAAATGATCATCTTCGCCAGATATGAACAACTGCGGTCTTGATCAAAAGCAGCATTTGCATAACCAGTATATCTGTAACGCCTCTTAGACGGGCGCTCCACAGTGCCCTCGCCATCATTGTCAGTCCCTACAGCTGGAGTCAGTGCTAGCTTGTGCTCTTGGTTCTTAATTATAGGACATGAACCCAAGGTAATGTGCCTCTTGAGATGGCTAGTACCCGCAATTTTTGAACCAGAGCTGTAAGCAAAAGTTTGCTTACACAGTTTGCAGCACGCCCGTGTAGCCCCTCCAGAGACAGCTTCAATAGTGAAGTGCTCCCACACTAGAGACTTCTTCCTACGGCGCCTTGATGTTGGAGGGGTACTCATCTCAGCACTGACCAATCCATTTACTTGGACCTCGTCACCTTGAGCTAAGTCCTCCGCAAGGACCAATTCATCACCCTGAACTTCCTCAGCATGAGCTTCCTCATTGCTTGGGACAATCTCATAACCTTGAACCATCTGGAAGTCGTTGCCAGTTTCCTCAGTCATGCTTCTTGGCTAGTAGCTAGAACTCACAAAATCTGTCAAATAGTAACATGGTAACAGCAGAAGTCAGTATAACAATCATTTGGCCAAAAAAAAAACTCGAAAGTGACTTATACACGGACAATAACAAACCAGTATCACTACAGTGGCCTATTTAACAAAACAGGAAGATAAAAGAAAGACAACATGATTTCTTGATAACAAATTAGCAAACCAGGTTATAGTAACTGGGGCACAGATGAAATAACAAAACTATAAATGTCATCCAGGAATATTATGGAAACTTAGAATGGGGAACATATCTTCTCACTCCTCAGTAAAAATGCTTAAAGTACACAATTTAAATTAAATTTTATTTGCCACCGAAAGTGCAAACTTCATGAGCAGAACCATGTGCTACGTTGTTTTCCCGACAAATTTCAAGAAAAGAAGGGGTATCACATGCAAATTTAATTGGACCAGAATGACTCGTGCAAACTTAGTTGGTAACTTTACTCCCTACTAGGAGTGATTTCAGCAACTCCAGATAAGTTTAAGAGTCATATCTTCCTTATTATCCTCATGCAATGCAAGCCAACCCATTCTTGTTCTTCGTAGGCACGAACTCAAAATAATCGGTGAGAAGGAAGTAATTAACAACCTATGTATTGCTTGAGTTGGCGGGACACAGTTACACAGGACTTGAAAATCAAGCTCACCTAGTTAGCTAAACAGCGGCAAGAGGCTAGTTTAAGATGCTAAGCTAGTACTATAAAGTTGCAAGAACCTATCTGAAGAGGTAGCTAGTGGTAGAGCTTTCTTTGGACAAAGAAAGATAAATTTCTCCGCACGACTACACAAAGCACATATTCAGATTCAATTATCTAAGCGCACCAAGTCCAACATCACATATCTCCCCCAAAACGAACGAATCAAAAGTTGCCCTCTCTCCGGATCTCCCATCCCCCCCCCCCCCCTACGGTGAAATTCATGCGCAAAAACTCGACATCTCAGCGAGCTCCGACGATTTCCAGGCAGGCCGCGCTTCCCCCCGACAAAGAATCCCTAACCCAACAACAACAACAATGTAGCCAGCACAGCAGCAAGCAGCAGTGGATTCGCGAGGAGAAATCGGTGACAAATTGGGCCTGGATAACGGGCCTCCCTCCCAAATCCCGATCAAAAAAAAGAAGAAGAACCGCACGAAAAGCTCCAAGCACGCGCAGATCTGGAAACGGAATTCAAACCCCCCACCCCCCGACCACGAGACCTCGCGAGGCAGGAAGAAGAGAAGA
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| CDS seq | ATGACTGAGGAAACTGGCAACGACTTCCAGATGGTTCAAGGTTATGAGATTGTCCCAAGCAATGAGGAAGCTCATGCTGAGGAAGTTCAGGGTGATGAATTGGTCCTTGCGGAGGACTTAGCTCAAGGTGACGAGGTCCAAGTAAATGGATTGGTCAGTGCTGAGATGAGTACCCCTCCAACATCAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGCTGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGTAAGCAAACTTTTGCTTACAGCTCTGGTTCAAAAATTGCGGGTACTAGCCATCTCAAGAGGCACATTACCTTGGGTTCATGTCCTATAATTAAGAACCAAGAGCACAAGCTAGCACTGACTCCAGCTGTAGGGACTGACAATGATGGCGAGGGCACTGTGGAGCGCCCGTCTAAGAGGCGTTACAGATATACTGGTTATGCAAATGCTGCTTTTGATCAAGACCGCAGTTGTTCATATCTGGCGAAGATGATCATTTTGCATGACTATCCACTTCACATTGTTCAACAGCCAGCCTTCACTACCTTTATTGACAGTCTGCAGCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCATGCAAGCATTCAGCACTATGCCTGGAAGGATTAGCCTCACTATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTACAAGCCTTTCAGACTGGAATATGAAGGACAAACTATTCACCATCACATTGGACAATGATTGCTCATCACATGATATATATAGTGCGAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTGTTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTTATTGCTTCAATTCATGGTGTCATCTATAATATCCGTGAAAGCATTAAGTTCATAAAAGCTTCTCCTAGCCGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAGCTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACACAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTTGAGACAAGTGATGATAACTACAATGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAGCTCGAGCTGTCAAATGCCACAGGGCATGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGGTTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCGCGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCAAAGTATGTTAAGGTGGTGGATGATGCTGTTCATGAGCTTTACAAGGAGTATGTTGCACAACCCCTCCCCTTGACGCCGGCTTATGTTGAGCAAGGGGACGGTAATAATGCACCTGCTAGCGAGAATGGTACTCAAGCAACTGCTCCTTCGACCGGCGATGGACTTGTGGACTTTGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTGGATGAGTCCCTCACTCCGCGCATCCAGGAATTTGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTTCCCTACTCTCTCAAGGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGATGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCGTCTGCGCCAAAGACTGGCTTCAGTATTTACCAGCTACCCCGGAGGCGCCGAGTACCACGCTTGTCAAGGTGGATGCACCATAG
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| Protein seq | MTEETGNDFQMVQGYEIVPSNEEAHAEEVQGDELVLAEDLAQGDEVQVNGLVSAEMSTPPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPIIKNQEHKLALTPAVGTDNDGEGTVERPSKRRYRYTGYANAAFDQDRSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEGEVYAVYQKEKENLMQAFSTMPGRISLTIGLWTTSQTLGYVSLAGQFIDSEWKIHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSREEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGHEDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYKEYVAQPLPLTPAYVEQGDGNNAPASENGTQATAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQYLPATPEAPSTTLVKVDAP |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g52310 | LOC_Os03g52310.1 | Chr03 | 30039049 | 30042858 | - | MSU_osa1r7 | ||
| CDS seq | ATGACTGAGGAAACTGGCAACGACTTCCAGATGGTTCAAGGTTATGAGATTGTCCCAAGCAATGAGGAAGCTCATGCTGAGGAAGTTCAGGGTGATGAATTGGTCCTTGCGGAGGACTTAGCTCAAGGTGACGAGGTCCAAGTAAATGGATTGGTCAGTGCTGAGATGAGTACCCCTCCAACATCAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGCTGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGTAAGCAAACTTTTGCTTACAGCTCTGGTTCAAAAATTGCGGGTACTAGCCATCTCAAGAGGCACATTACCTTGGGTTCATGTCCTATAATTAAGAACCAAGAGCACAAGCTAGCACTGACTCCAGCTGTAGGGACTGACAATGATGGCGAGGGCACTGTGGAGCGCCCGTCTAAGAGGCGTTACAGATATACTGGTTATGCAAATGCTGCTTTTGATCAAGACCGCAGTTGTTCATATCTGGCGAAGATGATCATTTTGCATGACTATCCACTTCACATTGTTCAACAGCCAGCCTTCACTACCTTTATTGACAGTCTGCAGCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCATGCAAGCATTCAGCACTATGCCTGGAAGGATTAGCCTCACTATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTACAAGCCTTTCAGACTGGAATATGAAGGACAAACTATTCACCATCACATTGGACAATGATTGCTCATCACATGATATATATAGTGCGAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTGTTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTTATTGCTTCAATTCATGGTGTCATCTATAATATCCGTGAAAGCATTAAGTTCATAAAAGCTTCTCCTAGCCGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAGCTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACACAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTTGAGACAAGTGATGATAACTACAATGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAGCTCGAGCTGTCAAATGCCACAGGGCATGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGGTTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCGCGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCAAAGTATGTTAAGGTGGTGGATGATGCTGTTCATGAGCTTTACAAGGAGTATGTTGCACAACCCCTCCCCTTGACGCCGGCTTATGTTGAGCAAGGGGACGGTAATAATGCACCTGCTAGCGAGAATGGTACTCAAGCAACTGCTCCTTCGACCGGCGATGGACTTGTGGACTTTGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTGGATGAGTCCCTCACTCCGCGCATCCAGGAATTTGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTTCCCTACTCTCTCAAGGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGATGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCGTCTGCGCCAAAGACTGGCTTCAGTATTTACCAGCTACCCCGGAGGCGCCGAGTACCACGCTTGTCAAGGTGGATGCACCATAG
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| Protein seq | MTEETGNDFQMVQGYEIVPSNEEAHAEEVQGDELVLAEDLAQGDEVQVNGLVSAEMSTPPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPIIKNQEHKLALTPAVGTDNDGEGTVERPSKRRYRYTGYANAAFDQDRSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEGEVYAVYQKEKENLMQAFSTMPGRISLTIGLWTTSQTLGYVSLAGQFIDSEWKIHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSREEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGHEDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYKEYVAQPLPLTPAYVEQGDGNNAPASENGTQATAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWLQYLPATPEAPSTTLVKVDAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.384967 | 0.640447 | 1.144753 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0733400 | RBH | 3.025788 | 1.375416 | 6.162885 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50624 | SBH | 3.041850 | 3.005957 | 1.732524 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0733400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0040110 | SBH | 0.116787 | 0.988499 | 0.390523 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039660 | SBH | 1.263770 | 3.117448 | 8.529654 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0512100 | RBH | 10.659963 | 9.832671 | 20.1603985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033070 | RBH | 0.398190 | 0.936633 | 1.682017 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0512700 | RBH | 16.5501385 | 11.4000565 | 41.9489725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033300 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033260 | RBH | 1.532031 | 1.029847 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033310 | RBH | 0.221889 | 2.229606 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
