Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0031120 | OGI:02095790 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:31139545-31140737 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagtctttcaaaggaaacttctcaaacctcctcaaccaaggttcctcaagccaagcaacaaatagtgatgcccaaaactccccttctacccaatttcccacaagttatccccaaaacttcagacctagttttctccaaaatttccatccttttggtcctccaagcaactaccagccatatcgacaccctccaatctttcaaggtgctcagcaacaagattactatgggcaacctactccaggaagcttggaaggttttcaacttcaagaaaatctggtgcactcatctaaccaagcatttggatttgcagccaatagatcacagtttggtatgcaatatagtacttcaattggggctgcagccaacacttcttctcatggatcagcttctccatgtcatacaagacataatgagaaagaagtagttgaggttgaagaggcaagtgatagcagtgaagaaggaagaagagggacacgcatcaattggactgaagatgacaatatacgactaatgattcttggttgaacaattcagttgatcccatcaaaggcaatgacaagaaatcagaacaatattggaaggctgtagctagagagttcaacagcaatatgcctagcaatgggaacaaaaggaaccccaagcaatgcagaacacattgggacaatgtcaagagagatgtcactaagttctgtggattttattctaaagctagaactactttcacaagtgggtattctgatgatatgataatggagaaagcccgtgaatggtacaaaaagcataacaaccaaaaacctttcaccttggagtatatgtggaaagatcttaaagatcaacctaaatggcgtagagtccttgaagagagtagccataataagaggaacaagatttctgaatcaggagcatatacttcatcgtcgaaccaagacacagaggaggaaacagagcgcaaagagaagcgccctgaggggcagaaagcagcaaaacagaggcaaaaaggaaaaggtgcaccatcacctttaggggataagccaaatcaaaatatggttctctttcatgaagctattacaactaaagcagcagcattgctaaaggcagcagaagcaacactgattggagcagaagcaaaaaagagaaggcaattgcaaaaaaagagaaggcaagggcagaaaaataccaaatgtatttaa
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| CDS seq | atggagtctttcaaaggaaacttctcaaacctcctcaaccaaggttcctcaagccaagcaacaaatagtgatgcccaaaactccccttctacccaatttcccacaagttatccccaaaacttcagacctagttttctccaaaatttccatccttttggtcctccaagcaactaccagccatatcgacaccctccaatctttcaaggtgctcagcaacaagattactatgggcaacctactccaggaagcttggaaggttttcaacttcaagaaaatctggtgcactcatctaaccaagcatttggatttgcagccaatagatcacagtttggtatgcaatatagtacttcaattggggctgcagccaacacttcttctcatggatcagcttctccatgtcatacaagacataatgagaaagaagtagttgaggttgaagaggcaaagcgcaaagagaagcgccctgaggggcagaaagcagcaaaacagaggcaaaaaggaaaaggtgcaccatcacctttaggggataagccaaatcaaaatatggttctctttcatgaagctattacaactaaagcagcagcattgctaaaggcagcagaagcaacactgattggagcagaagcaaaaaagagaaggcaattgcaaaaaaagagaaggcaagggcagaaaaataccaaatgtatttaa
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| Protein seq | MESFKGNFSNLLNQGSSSQATNSDAQNSPSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQDYYGQPTPGSLEGFQLQENLVHSSNQAFGFAANRSQFGMQYSTSIGAAANTSSHGSASPCHTRHNEKEVVEVEEAKRKEKRPEGQKAAKQRQKGKGAPSPLGDKPNQNMVLFHEAITTKAAALLKAAEATLIGAEAKKRRQLQKKRRQGQKNTKCI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0031120 | OsLiXu_03g0031120.01 | Chr03 | 31139545 | 31140737 | + | NAM | ||
| CDS seq | atggagtctttcaaaggaaacttctcaaacctcctcaaccaaggttcctcaagccaagcaacaaatagtgatgcccaaaactccccttctacccaatttcccacaagttatccccaaaacttcagacctagttttctccaaaatttccatccttttggtcctccaagcaactaccagccatatcgacaccctccaatctttcaaggtgctcagcaacaagattactatgggcaacctactccaggaagcttggaaggttttcaacttcaagaaaatctggtgcactcatctaaccaagcatttggatttgcagccaatagatcacagtttggtatgcaatatagtacttcaattggggctgcagccaacacttcttctcatggatcagcttctccatgtcatacaagacataatgagaaagaagtagttgaggttgaagaggcaaagcgcaaagagaagcgccctgaggggcagaaagcagcaaaacagaggcaaaaaggaaaaggtgcaccatcacctttaggggataagccaaatcaaaatatggttctctttcatgaagctattacaactaaagcagcagcattgctaaaggcagcagaagcaacactgattggagcagaagcaaaaaagagaaggcaattgcaaaaaaagagaaggcaagggcagaaaaataccaaatgtatttaa
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| Protein seq | MESFKGNFSNLLNQGSSSQATNSDAQNSPSTQFPTSYPQNFRPSFLQNFHPFGPPSNYQPYRHPPIFQGAQQQDYYGQPTPGSLEGFQLQENLVHSSNQAFGFAANRSQFGMQYSTSIGAAANTSSHGSASPCHTRHNEKEVVEVEEAKRKEKRPEGQKAAKQRQKGKGAPSPLGDKPNQNMVLFHEAITTKAAALLKAAEATLIGAEAKKRRQLQKKRRQGQKNTKCI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31510 | SBH | 0.0 | 0.0 | 0.026879 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018410 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018240 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015120 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017310 | SBH | 0.0 | 4.252145 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0122200 | SBH | 0 | 0.0078415 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023660 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0038000 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029260 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003070 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0031110 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009950 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010110 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009980 | SBH | 0.0 | 0.0 | 0.0 |
