Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0029540 | OGI:03076650 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:29691897-29698872 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggaagaagggtaagggaaggcaccgcggccgcggcggcggaggcgggggtggtggtggtggtggtggtggtgtgggtggggatcgcggcggtggagggagcggaggaggagggccgggaatggggcggcgcgggagcgatgcgcgtgcccagcaggcggcggcggcggcggcggcaatcagcggcatcgccacccgcctcgggttcgggtgcaccgtcagtacgttggctaagcggccgctgctccccgatcgtttctgcttttctttttttggctgatttggtttcgtttctcttcgttggggtggtggtctctaatggtggagtggtgttgttcgtcgttgtgcgtgcgtgcgtgtttgcagatgtcggcggcgggatgccaccgcagatggagttcctcatggcgtgtacggacggcgacgtcgcgcgcctcaagggtgagatcctccggctctaccccgagcccgtcttactcccgaactgctggtgcctcttcgtgggataggggttttgttagggttttgaggaggccgcgcggtggagggcttttttctagcttgtgtgtggtggtgaactggtgattgtgagTttttttttcagcattttctgtgccggctttgtgggtagatattctacacgaatgtgttctccgatgtttttgtgcatttgtgaaaacaattggatgagatggtttttagcctcatgcatcgtttcttgttccgttacaatatgatcgtgtatgcccgattgcgcgtgttgttcatagaagtgtatgcgtgtttaatgcgggtggagggttttcctgtctacttttggttcaaattggtactattctggataggaatttatttgtttgccattattcttaatagggattaataattactaataatacttctctttatgatgccatatttctgtaagagatctcttcctcttggttttgtttacttttgattaataattactaataatacttacctttatgatgccatatttctgtaagagatctcttcctcttggttttgtttacttcttctaagtgcccagatgtgatttttgggaggttatgtctccatttgtctagaattttgatcttgttttatgcacaaaaagaaacttctgtaataactagaattgcaatttgtgcaaatttgagccttacttttcttttggaactttcggtattgaagaggtggttgatagcatggatgaggatgatcgggaatcgctcgccactgtgaggatggaggggtatgggccactatttgaggcagcaagctcgggaaaaattgatctctgcaagtacttggtggaggagctcgggttcgatgtcaatgctgaagctagtcgtgattctggtatgtgccttcctagattattgcattgttttattatgcttaatgcatctcctataggcaatgcaattgtaatgggagctgttgtatgtgaggctagtcttgatagggtcaggaaccgtctttaccttaccatgaagagtttaactatagttacagcactgggtatgctgatttcttgttttttttattacacacatttgtagtgctggcatgctgctatctgaattggtaaaccaatgtaacaccgctatgtgattaaatccgttagtactataaattgattcttaagtgatggttcttgactagtcaccttttttatgaaaataaacaattatgtggcacctttgagacgtatgaatgtatggtgtcttgttaggtagggttttctgagggagtactgcaagaatttccctgaagaaaactcgattcttgcactaatctagtaatttgctttttgtaatgggccatataggattatatccttcagccttttttatattgcttttgcctacccttgatggtacagttgtgtctagacaatacatgcagttcactttgtgaagctcatctattatctgttacgtaatactacttgatttttcttctagttctttttgcgtggtatatacatgccatcaaaatttggttctaagaacttggtaaatgggagtttgtattgtagttttaactatactagtacccttgttgatatgcacttatgaagtggtgtttctgcatgattccattgtttaatattgcatctcatataaataccgtccaggcaataagtatttcatgaagttctcctttgcatatttggaattgtagctgctaatatttgtgcatttgcaaagctgttatacagcaatactcctgtgtcgttttgttggagttatctgattaaattgcttgtttgtaacgcccttgctaggtatgacgcctttgttttgcgctgtgttggatggacaagagattactgtgaagtattttcttgacaaaggtgctgatccgaataagaaagatgcagaaggctttgctcctcttcatgaagacgcaaaaataggtaacatatcacttcttttacatctgtgcatgtgtactacctttgtcacgtttactgttggcgaattttgcactgtataactttcccgacaaaagctaagtgtaaaacctataatccacttatgtgtctaaaatctataatccacttttgtgtcttatagtaggggaaaacagctcaagagacaaatccacttatctgcctccttttatgtaaatcttgccattttgttaggtttgtgcttgcttaggtggttttggtcaatactcgcaataatacttctgatttgtgacctgagaacacactagttctgaaacatacactttacttttgattcaatatgttaagtcagttctggaatgaacaattccaaaattaagaatgtctacaaaaaaaattattcttcactgtaacacaattccatgttgccccccccaacacttgttctcagggcacgttggaatagcacgactgttgttatctaaaggagctagtgttgatgtatcttcttctgaagggacaccacttcatgttgctgcctctaatggaaaatctagcattgtgcagattttattagagcaccatgcaaatgtaagtaccacaatttcttttatttcatctttccatgtcgtttgatagaattaaaggctcaatttgtgatggttcagcgccctccctccaaccacctaatgtgctggtttagttcttggcacaatatggaccaagttttttttgctccagctgcaccttttttgtggatatatagattcaacagtcacaagttgatgcaaaaagctttccaaacagggtctaagtgttctatgtacctgctttggtttgctactgtcttactttctgacttcgttgccacactgttcttatgtttgccgtttatgatgcccatatgtttcctagtatgggctgttccaggtcatgctggttgtaaatagtcgttaggcaacttacgatgctttttagatagtttattcatgatttcatgccttgcaatttgcaaattatgtaatgcgttgcatttttcttgtgccatacttccatgctgatatcttgttgatttttttctttgtccagaaactgtgttattaactgtttttcttagtttcaggaatttatacataagatatttctatttctggatttgtattgactttgctccttttaccagctaactatatgcatttgtgaggaatgactttcgttttgaaacaatgcagccaaatgtgatgacgccagattgttatacaccactgaccgcagttctttctgccactcctgaaatagtgaatgaatctgagtgtttgaagtgcatgaaactccttatcaaggtttgatacccaattgatcctctttgcatctctgtttcccaagtatcatgtggaaaaaaagtatatctattactcctttaaaagactccaatggtggtggtgaatggtgaatctgcattcagcccttcacctatccccactatctcctgacatgtggaccatcaaaactgtgaccaaagtaatgtgacctactgtgttttataaaaagcataatgtgatttcttgaatatttgaaattgtaatgacgtgaatattttttttttaaaatccatcgcaacgcatgggcattcgctagtaaattcatgttttatgtgagatatcatatcaacaatatatttttgtgtcatgtaacatttatcttcaggctggtgctcgttataaacttgcaactcctgatactccattggagatagcaactagaaatggcttaactgagtgtgttgcatacttgttggagatcagcactgttgttaaactaagtgaacatgtgagtaactcttgctaatttggtgcttttactttgtttttctcctaggacttgttgaacctataacttgtggcaatgatgattgctctgtgttatcatttctttgaaatgtaaaggaaagctatatatccttttttgtactgttttattggattatttttttctttgatctgttggacgtcttctgaaacccagcattggcatcagtcaccagtagtctggtagagcggatactagagaggaacaacacggaagcttttatatagagtttgtttgaatttgccttgttgacagcctgcctttaatgcgctatcttgctttgttatatgtaaagtactgaggagaattccaaggtcttgtgaaggacgacataatttgcatcccatgtttttctctttatgagactgagaataaattatccaggtctagagctataccagttcaaacggtacattgttactttaccaaccatctagacatggtttgaatcggccacagccttataattgataatattataagatgcttactccaggatttaatctgctgatttcaaacagaactgttatcctgtactggtttttattcaatacaaataaatggtggaaggggcattgcacttgtgatttttgtactgttcctctgcttaaggcatttttggagtggcaatggtagaaacaagtttaggaatggatgagtttatgatatggacatttgtacaaccaacctatctgtgtttgcaaaatatggaagtatttttccttttccaaattctggtatttgaagtggtggttgctccaaagcatgtagaaggggatgaatcagacatgttccacgtctagtctctttgggacatcgacacagtttgcaatgcagatgtttgatcattaactttttctaatcatataataattattaaaaatataacagcatgagagtgttttaatgaaaaaattaatgtcattttcaattatcaagtcttaatattgcttatgtattaatgatctaagattttgacgtttacctgagcatattctaaacctaaaacatcgtctatttgagaatgggaggaattattttttagaactgggggacattacacattgaaactacttttttggtacataatacatctgtgttcttcactacatgtatatatgcaagcaactaaaggaggctatttattctctatgcttttgtttgtaatcaccatgattcagctcattgttagaatgttagtggtattagtcgtaggaacattgcatctagtattctgtcaatttacagattttcagcttctatgtttttttttcttctatcactacttatgttttcctaatgatttaggacaaaggaagtgatggagacagaaaatctaagctgaaattacatggtggaaaagcatttgaggagggtgactatgcgggtgcaatcatattctacactgaggtatatagatgtgcattatatggttttacttcctgttggacttattactagctaagctgaaactgcatggtagaaaatcaataggaatgtgctgctgcctgtgctatcctcattattgctaaatgctaatacatgatcaagtggacattaccggaggacagaacaaaaagatatatcgcaatttacaaactcaagtcacactggttgcagttccttgcatctattactgctcaaaccactataactaagtattgtttaacttttgcagtttttatgcaagtaattttatagttttttctcaaaaatatattaacacattcattccattgttatagctggttcactgcaaaaagttaaatgcaaaaatacttcagccaaacattgtgtccagcatttacacttttaagcctatagttattgattcttacgtgcctgtaaaaaaaataaatccttgtgagacaaatacattgtggaattataatacctggatgatgatcacactactacatgaaacatgcatggcccttgacactttctgctatgaatgcaattagtgtgagagtggtcaagtgcacactggcaatgggaaaattgacatgttctttacagatataatttcttcaataatccaagcccgaactataaacaacagagattagcacaaaagaacccatctccacacataccacatcgcagaagcatggcagtctctgcatcccagttgacacctaggatactattatcacttctattgtctaagaactattgctgtgttaacaaaggaagactcagtttgaatttccaatggcattgccatcatgtgggggatacacttgtaagtggagatggtcttgccagttaagtgtggtaggacagtagtctatctcttaagcctaaaatagattatgagatgtaggttggtcgcaaccaatgccaagtagtcccacctgttggtgaacttagagttggaacttgggaggcaaattccctctgttggtgaactagaagagttggaacttgggaggcaaattccctcttcacgtcagtgtctgtagatcaaattgcgattaatagggaactgttattttgtctaggttaattctggaatcacagattggtcttatcacagtttggtatgatgcaggcaatgaaacttgatcctgcagatgccacactgtatacaaacaggagcctttgccatctgagaagtggtgcagcgcaagaggctttgctggatgctaatgattgcataaaactcaagcctgagtag
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| CDS seq | atggggaagaagggtaagggaaggcaccgcggccgcggcggcggaggcgggggtggtggtggtggtggtggtggtgtgggtggggatcgcggcggtggagggagcggaggaggagggccgggaatggggcggcgcgggagcgatgcgcgtgcccagcaggcggcggcggcggcggcggcaatcagcggcatcgccacccgcctcgggttcgggtgcaccgtcaatgtcggcggcgggatgccaccgcagatggagttcctcatggcgtgtacggacggcgacgtcgcgcgcctcaaggaggtggttgatagcatggatgaggatgatcgggaatcgctcgccactgtgaggatggaggggtatgggccactatttgaggcagcaagctcgggaaaaattgatctctgcaagtacttggtggaggagctcgggttcgatgtcaatgctgaagctagtcgtgattctggtatgacgcctttgttttgcgctgtgttggatggacaagagattactgtgaagtattttcttgacaaaggtgctgatccgaataagaaagatgcagaaggctttgctcctcttcatgaagacgcaaaaatagggcacgttggaatagcacgactgttgttatctaaaggagctagtgttgatgtatcttcttctgaagggacaccacttcatgttgctgcctctaatggaaaatctagcattgtgcagattttattagagcaccatgcaaatccaaatgtgatgacgccagattgttatacaccactgaccgcagttctttctgccactcctgaaatagtgaatgaatctgagtgtttgaagtgcatgaaactccttatcaaggacaaaggaagtgatggagacagaaaatctaagctgaaattacatggtggaaaagcatttgaggagggtgactatgcgggtgcaatcatattctacactgaggcaatgaaacttgatcctgcagatgccacactgtatacaaacaggagcctttgccatctgagaagtggtgcagcgcaagaggctttgctggatgctaatgattgcataaaactcaagcctgagtag
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| Protein seq | MGKKGKGRHRGRGGGGGGGGGGGGGVGGDRGGGGSGGGGPGMGRRGSDARAQQAAAAAAAISGIATRLGFGCTVNVGGGMPPQMEFLMACTDGDVARLKEVVDSMDEDDRESLATVRMEGYGPLFEAASSGKIDLCKYLVEELGFDVNAEASRDSGMTPLFCAVLDGQEITVKYFLDKGADPNKKDAEGFAPLHEDAKIGHVGIARLLLSKGASVDVSSSEGTPLHVAASNGKSSIVQILLEHHANPNVMTPDCYTPLTAVLSATPEIVNESECLKCMKLLIKDKGSDGDRKSKLKLHGGKAFEEGDYAGAIIFYTEAMKLDPADATLYTNRSLCHLRSGAAQEALLDANDCIKLKPE |
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| Function | Ankyrin-3 [UniProtKB/Swiss-Prot:O70511] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0029540 | OsLiXu_03g0029540.01 | Chr03 | 29691897 | 29698872 | + | NAM | ||
| CDS seq | atggggaagaagggtaagggaaggcaccgcggccgcggcggcggaggcgggggtggtggtggtggtggtggtggtgtgggtggggatcgcggcggtggagggagcggaggaggagggccgggaatggggcggcgcgggagcgatgcgcgtgcccagcaggcggcggcggcggcggcggcaatcagcggcatcgccacccgcctcgggttcgggtgcaccgtcaatgtcggcggcgggatgccaccgcagatggagttcctcatggcgtgtacggacggcgacgtcgcgcgcctcaaggaggtggttgatagcatggatgaggatgatcgggaatcgctcgccactgtgaggatggaggggtatgggccactatttgaggcagcaagctcgggaaaaattgatctctgcaagtacttggtggaggagctcgggttcgatgtcaatgctgaagctagtcgtgattctggtatgacgcctttgttttgcgctgtgttggatggacaagagattactgtgaagtattttcttgacaaaggtgctgatccgaataagaaagatgcagaaggctttgctcctcttcatgaagacgcaaaaatagggcacgttggaatagcacgactgttgttatctaaaggagctagtgttgatgtatcttcttctgaagggacaccacttcatgttgctgcctctaatggaaaatctagcattgtgcagattttattagagcaccatgcaaatccaaatgtgatgacgccagattgttatacaccactgaccgcagttctttctgccactcctgaaatagtgaatgaatctgagtgtttgaagtgcatgaaactccttatcaaggacaaaggaagtgatggagacagaaaatctaagctgaaattacatggtggaaaagcatttgaggagggtgactatgcgggtgcaatcatattctacactgaggcaatgaaacttgatcctgcagatgccacactgtatacaaacaggagcctttgccatctgagaagtggtgcagcgcaagaggctttgctggatgctaatgattgcataaaactcaagcctgagtag
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| Protein seq | MGKKGKGRHRGRGGGGGGGGGGGGGVGGDRGGGGSGGGGPGMGRRGSDARAQQAAAAAAAISGIATRLGFGCTVNVGGGMPPQMEFLMACTDGDVARLKEVVDSMDEDDRESLATVRMEGYGPLFEAASSGKIDLCKYLVEELGFDVNAEASRDSGMTPLFCAVLDGQEITVKYFLDKGADPNKKDAEGFAPLHEDAKIGHVGIARLLLSKGASVDVSSSEGTPLHVAASNGKSSIVQILLEHHANPNVMTPDCYTPLTAVLSATPEIVNESECLKCMKLLIKDKGSDGDRKSKLKLHGGKAFEEGDYAGAIIFYTEAMKLDPADATLYTNRSLCHLRSGAAQEALLDANDCIKLKPE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.106168 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0679800 | SBH | 1.180547 | 1.840904 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g47620 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0679800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030050 | RBH | 0.0 | 0.0 | 3.008575 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029770 | RBH | 0.0 | 0.0 | 0.387890 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029830 | RBH | 0.0 | 0.0 | 1.275840 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029660 | RBH | 0.0 | 0.0 | 1.433096 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0467100 | SBH | 57.561348 | 13.0844895 | 1.289752 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029370 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0468400 | RBH | 0.002472 | 0.023812 | 1.1938165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029760 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029490 | RBH | 0.0 | 0.0 | 0.330394 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029440 | RBH | 0.0 | 0.0 | 0.507881 |
