Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0021940 | OGI:03047440 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:18821358-18823306 | ||||||||
| Gene Symbol | RPS4, RPS19, OsRPS4, OsRPS19 | ||||||||||
| DNA seq | AAACCCTAGCCCCCCAAGCAGCCGCACCCTCACTCCCTCCTCTCTCCTCTCCTCCCCCCACGGCGGCGGCGGCGGCAGGATGGCGGATTCGACGGCGAGGACGGTGAAGGACGTGAACCCTCATGAGTTCGTCAAGGCCTACTCCGCCCACCTCAAGCGCTCCGGCAAGGTAAGCAACCGACCAACCAACCATCCAGGCCCTTACCTTGCGCTTTCCACGCAGATCCGAGTTCTTtggtagatcatggatgggatgtggtcgcccccgcccctatggagattcggtgttgttgagccttgtgcggatgcaatcacggtttccttttgctgctgcggcttagcttagggacaagcatccgatctgttcgttacgttgatgttggatgcgccgttgcttagtgtagttgtgtccttcatttcgtttacgttgatgttgatgcggcgttgcagtatgttgatttttcgtgattaggttatgtgattgagatctcgactctaatttggacagttgtttgtagccagccaggagctcctgttgttaggcaaccttcgaatatctttttaccaggtcgtcctgtgttttacttgttcttttgtgttgagctaaatactcTttattgtcaagatgtggtttatgttggttaagcatgcataaaatgtttcacgttaagtcataagaaatgtaatgtgatgatatttgactactgctgcatgaagtccttgcataccgcttgttgtggaatattcacgctggtcacaaattccgtgattatctattctgtttagTttcatgttaaatatattctttgttgcactgtgctgtggactttagttggcactcttgatgctataaaagaaataaagctttgtaattatgttaccgtcaaattacaactacgataggaaaccatttacatcaattggcctttgtgtatgttctttgttctaagttttgacaattaaaattCtcttatagatggagctcctgagtgggttgacatcgtgaagactgcgaggttcaaggagctccctccttatgatCcggactggtactacacgagggCtggtgagtacccttttcTtttacagcattcatgttcctttgtcaacatgaatgcctggccatctcactttcttttaaggaatcacagcgagggatctgagcataacactgttaatatgattgtgactttgttgcttgttttctgtagcctcgattgcaaggaagatctacctgaggcagggtattggtgtaggtggcttccagaagatctatggtggccgccagaggaatggctcacgtcccccgcacttctgcaagagcagcggcgctatctcacgcaacatccttcagcagctgcagaagatgggcatcatcgatgtcgaccccaaggggtaatttgcaagtgcttcatgctttacttcttggcgtatcttctgttataatgatgatcgtgtgctaatctatgtcaGCggaagactcatcacctcccagggaaggcgtgatctggaccaagtggccggaagagttgatgttaccatcgcctgaacagatccatggatcttcAacccttactgcctctcatatgtttggtggttgagtcggctacagTttgtttgcagttttgaattagaacatgccctatctttggttgagtcggctacagtttgtttgcagttttgaattagaacatgccctatctttgctggctcagagaattggaagttggatgcatctaggtgtgatactgcagtatgtgttttgtcttttcctgaatgaactcctaatgcactgtcactagttccggacaaaagaaaattaaattaagcccatggaatgtctttgctgatgccagtattactctagcggcaccgagttgtctattttcttatgttcagtacaagtgattacttgccgtgtcaTttatcagttaagcatcgaggagtac
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| CDS seq | atggatgggatgtggtcgcccccgcccctatggagattcggtgttgttgagccttatggagctcctgagtgggttgacatcgtgaagactgcgaggttcaaggagctccctccttatgatCcggactggtactacacgagggCtgcctcgattgcaaggaagatctacctgaggcagggtattggtgtaggtggcttccagaagatctatggtggccgccagaggaatggctcacgtcccccgcacttctgcaagagcagcggcgctatctcacgcaacatccttcagcagctgcagaagatgggcatcatcgatgtcgaccccaagggCggaagactcatcacctcccagggaaggcgtgatctggaccaagtggccggaagagttgatgttaccatcgcctga
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| Protein seq | MDGMWSPPPLWRFGVVEPYGAPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA |
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| Function | 40S ribosomal protein S19 [UniProtKB/Swiss-Prot:P40978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0021940 | OsLiXu_03g0021940.01 | Chr03 | 18821602 | 18823306 | + | NAM | ||
| CDS seq | atggatgggatgtggtcgcccccgcccctatggagattcggtgttgttgagccttatggagctcctgagtgggttgacatcgtgaagactgcgaggttcaaggagctccctccttatgatCcggactggtactacacgagggCtgcctcgattgcaaggaagatctacctgaggcagggtattggtgtaggtggcttccagaagatctatggtggccgccagaggaatggctcacgtcccccgcacttctgcaagagcagcggcgctatctcacgcaacatccttcagcagctgcagaagatgggcatcatcgatgtcgaccccaagggCggaagactcatcacctcccagggaaggcgtgatctggaccaagtggccggaagagttgatgttaccatcgcctga
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| Protein seq | MDGMWSPPPLWRFGVVEPYGAPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0021940 | OsLiXu_03g0021940.02 | Chr03 | 18821358 | 18823080 | + | IsoSeq | ||
| CDS seq | ACCCTAGCCCCCCAAGCAGCCGCACCCTCACTCCCTCCTCTCTCCTCTCCTCCCCCCACGGCGGCGGCGGCGGCAGGATGGCGGATTCGACGGCGAGGA |
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| Protein seq | TLAPQAAAPSLPPLSSPPPTAAAAAGWRIRRRG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr03 | 18821358 | 18822334 | + | OsLiXu_03g0021940.02 | OsLiXu_03g0021940.02,OsLiXu_03g0021940.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.428347 | 17.885635 | 16.526114 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0424500 | SBH | 17.817736 | 18.786518 | 59.200687 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31134 | SBH | 1.928967 | 1.356190 | 2.321333 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0424500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022250 | SBH | 8.485414 | 89.563408 | 41.921471 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022110 | SBH | 1.438426 | 41.083534 | 21.596684 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022190 | SBH | 11.636418 | 255.252426 | 78.072281 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022160 | SBH | 1.616010 | 8.078468 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021980 | SBH | 46.620426 | 356.491364 | 101.077469 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0292300 | SBH | 34.6655225 | 36.6204835 | 21.4029945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021720 | SBH | 3.350509 | 18.338356 | 9.774264 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0295700 | SBH | 34.304365 | 35.348364 | 62.0536325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021990 | SBH | 2.320616 | 3.182610 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022010 | SBH | 3.193465 | 405.373749 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022110 | SBH | 24.367868 | 347.508423 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021960 | RBH | 5.347289 | 25.675253 | 10.529646 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021810 | SBH | 2.787802 | 130.810211 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021760 | SBH | 4.528729 | 186.844391 | 33.995148 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021690 | SBH | 8.176517 | 210.684708 | 86.927559 |
