Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0022110 | OGI:03047470 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:18560681-18562636 | ||||||||
| Gene Symbol | RPS4, RPS19, OsRPS4, OsRPS19, AL1, AL1a, AL1b, AL1c, OsAL1 | ||||||||||
| DNA seq | ctagccccccaagcagccgcaccctcactccctcctctctcctctcctcccccccacggcggcggcggcggcggcggcggcaggatggcggattcgacggcgaggacggtgaaggacgtgaaccctcatgagttcgtcaaggcctactccgcccacctcaagcgctccggcaaggtaagcaaccgaccaaccaaccatccaggcccttaccttgcgctttccacgcagatccgagttcttggtagatcatggatgggatgtggtcgcccccgcccctatggagattcggtgttgttgagccttgtgcggatgcaatcacggtttccttttgctgctgcggcttagcttagggacaagcatccgatctgttcgttacgttgatgttggatgcgccgttgcttagtgtagttgtgtccttcatttcgtttacgttgatgttgatgcggcgttgcagtatgttgatttttcgtgattaggttatgtgattgagatctcgactctaatttggacagttgtttgtagccagccaggagctcctgttgttaggcaaccttcgaatatctttttaccaggtcgtcctgtgttttacttgttcttttgtgttgagctaaatactctttattgtcaagatgtggtttattgttggttaagcatgcataaaaatgtttcacgttaagtcataagaaatgtaatgtgatgatatttgactactgctgcatgaagtccttgcataccgcttgttgtggaatattcacgctggtcacaaattccgtgattatctattctgtttagtttcatgttaaatatattctttgttgcactgtgctgtggactttagttggcactcttgatgctataaaagaaataaagctttgtaattatgttaccgtcaaattacaactacgataggaaaccatttacatcaattggcctttgtgtatgttctttgttctaagttttgacaattaaaattctcttatagatggagctccctgagtgggttgacatcgtgaagactgcgaggttcaaggagctccctccttatgatccggactggtactacacgagggctggtgagtacccttttcttttacagcattcatgttcctttgtcaacatgaatgcctggccgtctcactttcttttaaggaatcacaacgagggatctgagcataacactgttaatatgattgtgactttgttgcttgttttctgtagcctcgattgcaaggaagatctacctgaggcagggtattggtgtaggtggcttccagaagatctatggtggccgccagaggaatggctcacgtcccccgcacttctgcaagagcagcggcgctatctcacgcaacatccttcagcagctgcagaagatgggcatcatcgatgtcgaccccaaggggtaatttacaagtgcttcatgctttacttcttggcgtatcttctgttataatgatgatcgtgtgctaatctatgtcagcggaagactcatcacctcccagggaaggcgtgatctggaccaagtggccggaagagttgatgttaccatcgcctgaacagatccatggatcttcaacccttactgcctctcatatgtttggtggttgagtcggctacagtttgtttgcagttttgaattagaacatgccctatctttggttgagtcggctatagtttgtttgcagttttgaattagaacatgccctatctttgctggctcagagaattggaagttggatgcatctaggtatgatactgcagtatgtgttttgtcttttcctgaatgaactcctaatgcactgtcactagttccggacaaaagaaaattaaattaagcccatggaatgtctctgctgatgccagtattactctagcggcaccgagttgtctattttcttatgttcagtacaagtgattacttgccgtgtcatttatcagttaagcatcgaggagtac
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| CDS seq | atggagctccctgagtgggttgacatcgtgaagactgcgaggttcaaggagctccctccttatgatccggactggtactacacgagggctgcctcgattgcaaggaagatctacctgaggcagggtattggtgtaggtggcttccagaagatctatggtggccgccagaggaatggctcacgtcccccgcacttctgcaagagcagcggcgctatctcacgcaacatccttcagcagctgcagaagatgggcatcatcgatgtcgaccccaagggcggaagactcatcacctcccagggaaggcgtgatctggaccaagtggccggaagagttgatgttaccatcgcctga |
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| Protein seq | MELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA |
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| Function | 40S ribosomal protein S19 [UniProtKB/Swiss-Prot:P40978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0022110 | OsKeNa_03g0022110.01 | Chr03 | 18561661 | 18562636 | + | NAM | ||
| CDS seq | atggagctccctgagtgggttgacatcgtgaagactgcgaggttcaaggagctccctccttatgatccggactggtactacacgagggctgcctcgattgcaaggaagatctacctgaggcagggtattggtgtaggtggcttccagaagatctatggtggccgccagaggaatggctcacgtcccccgcacttctgcaagagcagcggcgctatctcacgcaacatccttcagcagctgcagaagatgggcatcatcgatgtcgaccccaagggcggaagactcatcacctcccagggaaggcgtgatctggaccaagtggccggaagagttgatgttaccatcgcctga
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| Protein seq | MELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0022110 | OsKeNa_03g0022110.02 | Chr03 | 18560681 | 18562552 | + | IsoSeq | ||
| CDS seq | agccccccaagcagccgcaccctcactccctcctctctcctctcctcccccccacggcggcggcggcggcggcggcggcaggatggcggattcgacggcgaggacggtgaaggacgtgaaccc |
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| Protein seq | SPPSSRTLTPSSLLSSPPRRRRRRRRQDGGFDGEDGEGREP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.438426 | 41.083534 | 21.596684 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0424800 | SBH | 29.782005 | 23.527519 | 98.116165 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31090 | SBH | 10.971764 | 13.014286 | 14.181690 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0424500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022250 | SBH | 8.485414 | 89.563408 | 41.921471 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022130 | RBH | 2.630236 | 88.197571 | 32.092308 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022170 | RBH | 15.557996 | 158.181641 | 60.942596 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022180 | RBH | 1.935883 | 13.557595 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021960 | RBH | 41.140041 | 336.734711 | 146.410187 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0292300 | RBH | 34.6655225 | 36.6204835 | 21.4029945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021720 | RBH | 3.350509 | 18.338356 | 9.774264 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0295700 | SBH | 34.304365 | 35.348364 | 62.0536325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021990 | RBH | 2.320616 | 3.182610 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0021990 | SBH | 3.229399 | 263.853577 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022110 | RBH | 24.367868 | 347.508423 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021960 | SBH | 5.347289 | 25.675253 | 10.529646 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021790 | SBH | 1.337575 | 134.840683 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021780 | SBH | 5.676847 | 217.981125 | 40.785889 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021690 | RBH | 8.176517 | 210.684708 | 86.927559 |
