Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0424800 | OGI:03047470 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:17727085-17728835 | ||||||||
| Gene Symbol | RPS4, RPS19, OsRPS4, OsRPS19, AL1, AL1a, AL1b, AL1c, OsAL1 | ||||||||||
| DNA seq | CGGCGGCGGCGGGATGGCGGATTCGACGGCGAGGACGGTGAAGGACGTGAACCCTCATGAGTTCGTCAAGGCCTACTCCGCCCACCTCAAGCGCTCCGGCAAGGTAAGCAACCGACCAACCAATCATCCAGGCCCTTACCTTGCGCTTTCCACGCAGATCCGAGTTCTTGGTATATCATGGATGGGATGTGGTCGCCCCCGCCTCTATGGAGATTCGGTGTTGCTAAGCCTTGTGCGGATGCAATCACGGTTTCCTTTTGCTGCTGCGGCTTAGCTTAGGGACAAGCATCCGATCTGTTCGTTACGTTGATGTTGGATGCGCCGTTGCTTAGTGTAGTTGTGTCCTTCATTTCGTTTACGTTGATGTTGATGCGGCGTTGCAGTATGTTGATTTTTCGTGATTAGGTTATGTGATTGAGATCTCGACTCTAATTTGGACAGTTGTTTGTAGCCAGCCAGGAGCTCCTGTTGTTAGGCAACCTTCGAATATCTTTTTACCAGGTCGTCCTGTGTTTTACTTGTTCTTTTGTGTTGAGCTAAATACTCTTTATTGTCAAGATGTGGTTTATTGTTGGTTAAGCATGCATAAAAATGTTTCACGTTAAGTCATAAGAAATGTAATGTGATGATATTTGACTACTGCTGCATGAAGTCCTTGCATACCGCTTGTTGTGGAATATTCACGCTGGTCACAAATTCCGTGATTATCTATTCTGTTTAGTTTCATGTTAAATATATTCTTTGTTGCACTGTGCTGTGGACTTTAGTTGGCACTCTTGATGCTATAAAAGAAATAAAGCTTTGTAATTATATTACCGTCAAATTACAACTACGATCGGAAACCATTTACATCAATTGGCCTTTGTGTATGTTCTTTGTTCTAAGTTTTGACAATTAAAATTCTCTTTTAGATGGAGCTCCCTGAGTGGGTTGACATCGTGAAGACTGCGAGGTTCAAGGAGCTCCCTCCTTATGATCCGGACTGGTACTACACGAGGGCTGGTGAGTATCCTTTTCTTTTACAGCATTCATGTTCCTTTGTCAACATGAATGCCTGGCTGTCGCACTTTCTTTTAAGGAATCACAGCGAGGGATCTGAGCATAACACTGTTAATATGATTGTGACTTTGTTGCTTGTTTTCTGTAGCCTCGATTGCAAGGAAGATCTACCTGAGGCAGGGTATTGGTGTAGGTGGCTTCCAGAAGATCTATGGTGGCCGCCAGAGGAACGGCTCACGCCCCCCGCACTTCTGCAAGAGCAGCGGCGCTATCTCACGCAACATCCTTCAGCAGCTGCAGAAGATGGGCATCATTGATGTCGACCCGAAGGGGTAATTTTCAAGTGCTTTCTTGGCGTATCTTATGTTGTAATGATGATTGTGTGCTAATCTATGTGTTGTGCTGATCAACTGCAGTGGAAGACTCATCACCTCCCAGGGAAGGCGTGATCTGGACCAAGTGGCCGGAAGAGTTGATGTTACCATCGCCTGAACAGATCCATTGATCCTCAACCCTTAATGCCTGTCATGTTTGGTGGTTGAGTTGGCTACAGTTTGTTTGCAGTTTTGAATTAGAACATGCCCTATCTTTGTTGGCTCAGAGAATTGGAAGTTGGATGCATCTAGTTATGATATTGCAGTATGTGTTTTTTGTCTTTTGCTGAATGAACTCCTAATGCACTGTCACTAGTTCCGGACAAAAGAAAATTAAATTATGCCAATGGAATGTCTCTGCTGATGCCAGTTTTATTC
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| CDS seq | ATGGCGGATTCGACGGCGAGGACGGTGAAGGACGTGAACCCTCATGAGTTCGTCAAGGCCTACTCCGCCCACCTCAAGCGCTCCGGCAAGATGGAGCTCCCTGAGTGGGTTGACATCGTGAAGACTGCGAGGTTCAAGGAGCTCCCTCCTTATGATCCGGACTGGTACTACACGAGGGCTGCCTCGATTGCAAGGAAGATCTACCTGAGGCAGGGTATTGGTGTAGGTGGCTTCCAGAAGATCTATGGTGGCCGCCAGAGGAACGGCTCACGCCCCCCGCACTTCTGCAAGAGCAGCGGCGCTATCTCACGCAACATCCTTCAGCAGCTGCAGAAGATGGGCATCATTGATGTCGACCCGAAGGGTGGAAGACTCATCACCTCCCAGGGAAGGCGTGATCTGGACCAAGTGGCCGGAAGAGTTGATGTTACCATCGCCTGA
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| Protein seq | MADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA |
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| Function | 40S ribosomal protein S19 [UniProtKB/Swiss-Prot:P40978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0424800 | OsNip_03t0424800-00 | Chr03 | 17727085 | 17728835 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGATTCGACGGCGAGGACGGTGAAGGACGTGAACCCTCATGAGTTCGTCAAGGCCTACTCCGCCCACCTCAAGCGCTCCGGCAAGATGGAGCTCCCTGAGTGGGTTGACATCGTGAAGACTGCGAGGTTCAAGGAGCTCCCTCCTTATGATCCGGACTGGTACTACACGAGGGCTGCCTCGATTGCAAGGAAGATCTACCTGAGGCAGGGTATTGGTGTAGGTGGCTTCCAGAAGATCTATGGTGGCCGCCAGAGGAACGGCTCACGCCCCCCGCACTTCTGCAAGAGCAGCGGCGCTATCTCACGCAACATCCTTCAGCAGCTGCAGAAGATGGGCATCATTGATGTCGACCCGAAGGGTGGAAGACTCATCACCTCCCAGGGAAGGCGTGATCTGGACCAAGTGGCCGGAAGAGTTGATGTTACCATCGCCTGA
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| Protein seq | MADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 29.782005 | 23.527519 | 98.116165 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0424500 | RBH | 17.817736 | 18.786518 | 59.200687 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31090 | SBH | 10.971764 | 13.014286 | 14.181690 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0424800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022250 | SBH | 8.485414 | 89.563408 | 41.921471 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022130 | SBH | 2.630236 | 88.197571 | 32.092308 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022170 | RBH | 15.557996 | 158.181641 | 60.942596 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022160 | SBH | 1.616010 | 8.078468 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021980 | RBH | 46.620426 | 356.491364 | 101.077469 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0292300 | RBH | 34.6655225 | 36.6204835 | 21.4029945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021720 | SBH | 3.350509 | 18.338356 | 9.774264 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0295700 | SBH | 34.304365 | 35.348364 | 62.0536325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022010 | RBH | 3.012103 | 4.160599 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022010 | SBH | 3.193465 | 405.373749 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022110 | SBH | 24.367868 | 347.508423 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021960 | SBH | 5.347289 | 25.675253 | 10.529646 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021810 | RBH | 2.787802 | 130.810211 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021760 | SBH | 4.528729 | 186.844391 | 33.995148 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021690 | RBH | 8.176517 | 210.684708 | 86.927559 |
