Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0018791 | OGI:03038910 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:15293114-15293617 | ||||||||
| Gene Symbol | prx46, POD1, OSPOD1 | ||||||||||
| DNA seq | acgcggcgctcctgacgtcgccggagacggcgaagatggtggtggacaacgccgtcatccccgggtggtgggaggacaggttcaaggcggccatggtgaagttggcgagcatccaggtgaagaccgggtaccaggggcagatcaggaagaactgcagggtcatcaactactgatttatctacaagtttagctgcgtgattcaattacctggtgaagtacgtgctcaacgatgacgacgtacacggtttgatagtttcacaccctccttgatcaagtcgcaagcgtacgtgttgatgatgttatgattggatgtgacttttgcttcacatttatgttctccctcttttgttaccattccttaattcctcatttgtgaaccccaaggtttacatgctatggatttctttgttttgacctaattgtgtaataaggtcatatgtacttggaataattgtaagttaagttttttgcaacaagtgcccgctatatattgatgtttatctg
More
|
||||||||||
| CDS seq | atggtggtggacaacgccgtcatccccgggtggtgggaggacaggttcaaggcggccctggtgaagtacgtgctcaacgatgacgacgtacacggtttgatagtttcacaccct |
||||||||||
| Protein seq | MVVDNAVIPGWWEDRFKAALVKYVLNDDDVHGLIVSHP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0018791 | OsLiXu_03g0018791.01 | Chr03 | 15293114 | 15293617 | + | IsoSeq | ||
| CDS seq | atggtggtggacaacgccgtcatccccgggtggtgggaggacaggttcaaggcggccctggtgaagtacgtgctcaacgatgacgacgtacacggtttgatagtttcacaccct |
|||||||
| Protein seq | MVVDNAVIPGWWEDRFKAALVKYVLNDDDVHGLIVSHP |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0018791 | OsLiXu_03g0018791.02 | Chr03 | 15293227 | 15293598 | + | IsoSeq | ||
| CDS seq | atgattggatgtgacttttgcttcacatttatgttctccctcttttgttaccattccttaattcctcat |
|||||||
| Protein seq | MIGCDFCFTFMFSLFCYHSLIPH |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0018791 | OsLiXu_03g0018791.03 | Chr03 | 15293318 | 15293472 | + | IsoSeq | ||
| CDS seq | tacctggtgaagtacgtgctcaacgatgacgacgtacacggtttgatagtttcacaccct |
|||||||
| Protein seq | YLVKYVLNDDDVHGLIVSHP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.673227 | 13.563496 | 0.777037 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0368900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25330 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0368900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019120 | RBH | 0.0 | 279.647675 | 0.421681 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0240700 | SBH | 0.005399 | 1.3273925 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0240400 | SBH | 1.881955 | 9.5509355 | 0.0184975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
