Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_02g0024480 OGI:02068690 | 14/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr02:25465383-25472438
Gene Symbol BIP135
DNA seq

aaaaaaaaaaagagaagataatgtatactctactcgcagaggaatatgagctctgaaaaacaggatttcttaatggtgccaggcggggctgacagaccggcacattagctacaaaactcatttgctcatatggcctaaataaataagacatcaacaggctagctacaacatcatccgacacaactatgatgtcattggcctcttggcaagcatggggttcaaccaaccattaaaagttgcgcacttgcgcctaacatcacaactacagcatttttatcttgtctacaacccctagttaaaaccgctacatgcccaatcagttggcattccaataggtcacccgaccgaagagttacaaccacacagggtgcaatgttttaacaccttttgagactaagcgaaccttttgagtctagagagcgaatccatgtacaagagaaattagcgggtaacttcaagccttccttctgcgcttcttttctccagtagaagcgccaccagcggatccctaacttcaagccttccttctgcgcttctttcctccagtagaagcaccaccagcagatcccccctgctccacttcagctgctgcctcaccttctgcttccttctgcttctctttctcagctgagacattggccttagattcctcaccagccaccgcagcagcggcaacctttggctttcgacctggcttggctcttccttcacttggtttgctctcacccttcaaatccttgcctccgctgctagcctcctttggtttactggcactcttgttgctaccatcctcagacaaatcatcctttgtcttctcagttgacttagtggctttgtcttcggatccttcttcagcttccttcttaaggtcactgccaaccttaggtgtctcattgtcatccttccttgcagctttcccctttgatttgcttgaagttgccgagatgttacttttgggtgtaccattgctggaacctttcggacgacccctttttttgggaagatcgcctccaccactgccattaaacagaaacataagtctcagaaaatatgtagtcaattgtctacactgcttctttgattaccaaattaccttttaggtgtttctgcatttccttccttcaattgcactgagctccctcttccttttctgcccctaccccgtggcttcggggaacttgaaacaaccagtaacacaaatttatcaaacaaaataccacttgatgcaaataagtatgacaaattagtaacaggtttcacaattggaataaaaggtgttcaatttagtaatttttgagttaatttgcatggaaacgaattaggatggacccatgggctggcacaacccgacccagtcatccctagagaaaactaggaattattgggtgtttgtaaggaatttgctgaattcccaacacagtcaggacagcagacatttctctacagttctttttaccatggccaaattatgacaaaaaaaaacttagcctattcagcaagccaacatagcttataacaataggaggtgccaagcataatagaactcaagaaactggagagaaataaatcattaaaaaatgcactggatgctacgattgaaaaccagtgattgaatcaataaaaaacttgaactgtatagctaccataaatgcaaagtaaaaatgtgattttgaagttgcaggtatggaaatggtgtcaagataattcacttacatctcggaagccacatcaggggttttgtcttgttcctgatataacaactgctaattagtttaaaaaaaaggaagaggagaaagcagaatcacaacattaaatgcaatctaagcagaatcacaacattatgtgcatacctcactgacgaattcccacttttcatccctaaggagaagcacctctacatctccatcatcatatgcaatctaagctccaaaagtacaaaaaatcaatcatacaagaaaaacagaataaaacctttttttaccaagagaataaaacaatattttaattggcataagctcttcatgtaggtcatatatcccatgaaagcagatgatacaatgtacagggctcataccttgtgcctttttgaagctgtatcaaatgagtcaacaatgcccttgtaaaacctgcaaatatttaaaacaaaggacctcaaaattttgaaacaggctacaaaataacccaataaattgtaccaaagcaaaggacatgcctcatcaatactgagcaaatatattattatttgattaaaacatcaaacaggactaacctaaatactaagtcaatgttaatatatatacaccatttagaaaaagctacacagcagatttggaattagaacagcggaagaatagaaaggcataaagaagtAaaaaagatgagctagcaaatatgccgtgtgatgataatgtctatatatctggttagtttatatactccagtgtcaacatgaaacatgcaacaattgtaaaagattttgcatagagactaatgatcatatcacttacttcttgtcgtcaggccaccatacttggatccttgcaccaacaaggctagcatcaaggcctttattcttcctagaacgaggagtctgcagagggcatataaacttaagaataagaccaaattactaaaagaagaaactacaaagtaaacaaaatcatgaaaacaaagacacaggaaaagggaaaaactaaaggtaaagcaaaatataatttcagtgtctacatctttactgtactaaacaatccaaaaatatggatatacaaaacataggagatgttaacaggtgtcttgagaaccaaacatcttcaagctcaactataattacgcttctaaaacattgttatgcattaagtgattttatcctaaatcacctgaataaactgggatccctattgaagcgtatttttttatcctaaatcagctattgaaggttgttacctagggtgtgcccagaaaatataatcaaatattttttaacacagatttttctaacacagaattaccagttttgaagttggaagttgttgcaacaaacaaatattatatttgagctattgcaacagcattctctacaagtcagattattaaacagaaatttagtaagcacattatcttttggcacaaaaagaaagcaacatgctaacttaaattacacctttatgagtaagcgatcaaatgaaatatgagcagagaaaagcacagcagacaggcaacagaacacagagaatcaactaatcaagaatgcatgcataatcaagtgcatacctcttgttcatcctcttgtgaccttttcctcttggagccattattgtcctggccttggctgcccttggtcttagctgaccccttggacacggactttggagagaccatttcctttattgagatagaacaaacagtacaacaatcagtgtgctaaaaagcaactgaatagatgctattaaattctatctgttttgaattaacatcaaagataggatcaaatcacaattgaaccacactaaataactcctatatactcagtgttatagcaaagtttacaagacaataacagggtttgaatcacaagcaactgtatcagtaaacaaaagctcgtaataccttgaaacagtaaacacactcaaaacatgtttcagatacacaaacatagcatgccagagagaaatagtattaacaaagactgaataatgcagcaaatcaatgctaaagacaggcagctttactaattatacaaaaaaattactactgacaagaaaattacctttaggctcagatccttagcagtatcttccttggagtcagtttcatccttctgtttcaaactgatcttttgttgcttttttgatgaccctgctccacttgcctttcttgtagatgacttggaatcatccttagatgactgcttcgataacttccctgttgaatcagtagtctcctcaacctttttcagacctagaactttctttccagcagccttcttctccaatgactttagtccaggaggtcgacctctttttgatttgaccatagctggtgagccatcaacacgttctgatgtttcagcagaagctccattggcaacctttgctgactgcttaacaccatcctttttctctgaatcgggattggataattccttgggattagcagctgcagattctgtgccttcagtaacaagattcaacatatcagcatcttttgtatttacagaacagtaaggttgttcaaggcttcaagcttatcctttggaggtgtccttaccattatcaactggagttgcaccactgccaatagcagtagtctgagtaacatcttgctccaactttgcaggttcctgaaaatagagatggcacggtgtattatcaaaagttcatttgtttagttgataaaaacagaaatgcagagcagcatacctgaggtagctcatcagaaatagtcctttcagaaagtttgccatcatccacctgaacattattaactcaatagtaagaatagatgaatccacatcaagagcccatgtggccaatttgttttccagtttcaacgataaggtgttgaaatgagctgtatattaagttctgagactgatattcacaccatcacaaagtacacccgtacactctatagactaaagccaatcacaatttcatcttccaagtgatccattccaatataatgcagagagcattaatgaattcaaggcgtatttcaaacatactaaaaaaattatacacataatgacctattctaacacctatgattatcacatagaagtctaaggtaaaaaagaaacatctctgaatattagttgctgcatgttagtaattcaactgaccacatcttttccagaaggatcagcatccatgtcttccttgacatctgaactgtcttcacaaattgttgcgataatattgtcgtattcattcaaggaagtgcctttaagtaactgcagaaagaccggtttcagtttttcagagcatgcacctatcaccttctctgcaagttcaaaagatgcagcagaagtttcctggaaataaaaaccaaatcaattagatggtatctttttgtctgggtaggaatgtagattcatattgttgatgtcaagaaagttaaaaacatatatatgtaccttcagttcggacttagcatgcttgagcagacattctgcaatgggtatctcaacttcatcatcctcttcaattaccaaaatcattattgtagtcatacagtttgtaacattttctgggtgatttggtctgaaatatgagacaagggatttcaaattatgagtgtacatacaaagcatacaatgcagacattaaagtataatatctaacaaaaatgtgttaattatcaactggccaaagtagtaacacaagcaagttatttaggtaaaaacaatgtaatcatgaaagatcttaatattggcgatttagctcagactgatgactttaaatacagagtatataagaagcctataagaaaaacattgaataagatctgtgcagaacagaacagccaattgtataaaaaactatctgatattcttgttcttgaagaaccgttacaggtaagaactatgttaaggaaataaaattgactcgtttagcattcttggagaacataatttagcaaaacttacttcaaacttatcatgagaactagcaaatatagatgaaattaagaacaaacgaagaggtacttacttcacagttgtgaagaagttgtgaaacatttgcagtatcagatcttcacactcaagatccaacatcaccacgcatagccggacctttgccacagtttcaaggattgcaactatccttcgaaacaaggggttctccatatcatccaatttctcaaaagaccccaccattatggaaaacacgtcctgaaccgaaagtagatagcacaggtcagatgtcaggatataggatatcaaaacaagatcatcttcatccgataagaaaaaggtataccttcatgacatcatcgtcatatggagtgtcaggtgcagtgatcctagttatctcagaaatacaggacaccacagaaagtttcacctcatagctagaattatccaacagctctttcttgatcaaagctttcattgctggagttatagcactaatcatgctttcagaaggtgcttgttccactttcaatatatatatttcggcctcctgcatgaacaaacaatcatgccaatcaaagatcagttttctagggaaccaagaagatcatatatgctcttaataaaactgtaatgttaaaggagtatggtgcatttacaggaatcaacaccacggcaaactccgtatatcaacaatccaactccatatgtcaacaaacacgacggaaaatactctagaaaaacaaatgcttgctctttgtgccataacggaaaatcaaacggattgcagagcagcagaaaccaaaatgaatcaaaagcggaattccagtccagtaaaaatcacgactcccaaccgaatcaatcctcgcggaatggtatcaagccaaagcttccgaaccatcccgaaatcaaaccaaccatcccgaaaccacgcaatcaacaggattaataaaaataaataaatccaacaaacagcagaaccctgacaggagaggcaaaaaaaaaacgtttcaaagcgaacacaaacgaattccagcacagagagggttagagagactcacgtggatgagcttgagcaaggcatcgacgtcgtcggggggagactggagcttctccccgacgtccctcagcttcccctcgagctccccgagctccgccattcccgcgcgcgcggcaccccccgcgcgtccccccccccctgccaccccctggatccggccgcccccgccccgccccgccgcgcgagatctacggcttgcttgctagggtttcagcggggagggaggagcaacgccgcgcaccacccccctgcccacgcgcgcgcgaggcagcggccgacgccgacgacggcaaaccaaggtgacgggaagagaggagaggagatggatttctctatagctatctctgcctctctctctctc

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CDS seq

atggcggagctcggggagctcgaggggaagctgagggacgtcggggagaagctccagtctccccccgacgacgtcgatgccttgctcaagctcatccacgaggccgaaatatatatattgaaagtggaacaagcaccttctgaaagcatgattagtgctataactccagcaatgaaagctttgatcaagaaagagctgttggataattctagctatgaggtgaaactttctgtggtgtcctgtatttctgagataactaggatcactgcacctgacactccatatgacgatgatgtcatgaaggacgtgttttccataatggtggggtcttttgagaaattggatgatatggagaaccccttgtttcgaaggatagttgcaatccttgaaactgtggcaaaggtccggctatgcgtggtgatgttggatcttgagtgtgaagatctgatactgcaaatgtttcacaacttcttcacaactgtgaaaccaaatcacccagaaaatgttacaaactgtatgactacaataatgattttggtaattgaagaggatgatgaagttgagatacccattgcagaatgtctgctcaagcatgctaagtccgaactgaaggaaacttctgctgcatcttttgaacttgcagagaaggtgataggtgcatgctctgaaaaactgaaaccggtctttctgcagttacttaaaggcacttccttgaatgaatacgacaatattatcgcaacaatttgtgaagacagttcagatgtcaaggaagacatggatgctgatccttctggaaaagatgtggtggatgatggcaaactttctgaaaggactatttctgatgagctacctcaggaacctgcaaagttggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatggcacagaatctgcagctgctaatcccaaggaattatccaatcccgattcagagaaaaaggatggtgttaagcagtcagcaaaggttgccaatggagcttctgctgaaacatcagaacgtgttgatggctcaccagctatggtcaaatcaaaaagaggtcgacctcctggactaaagtcattggagaagaaggctgctggaaagaaagttctaggtctgaaaaaggttgaggagactactgattcaacagggaagttatcgaagcagtcatctaaggatgattccaagtcatctacaagaaaggcaagtggagcagggtcatcaaaaaagcaacaaaagatcagtttgaaacagaaggatgaaactgactccaaggaagatactgctaaggatctgagcctaaaggaaatggtctctccaaagtccgtgtccaaggggtcagctaagaccaagggcagccaaggccaggacaataatggctccaagaggaaaaggtcacaagaggatgaacaagagactcctcgttctaggaagaataaaggccttgatgctagccttgttggtgcaaggatccaagtatggtggcctgacgacaagaagttttacaagggcattgttgactcatttgatacagcttcaaaaaggcacaagattgcatatgatgatggagatgtagaggtgcttctccttagggatgaaaagtgggaattcgtcagtgaggaacaagacaaaacccctgatgtggcttccgagatttccccgaagccacggggtaggggcagaaaaggaagagggagctcagtgcaattgaaggaaggaaatgcagaaacacctaaaagtggtggaggcgatcttcccaaaaaaaggggtcgtccgaaaggttccagcaatggtacacccaaaagtaacatctcggcaacttcaagcaaatcaaaggggaaagctgcaaggaaggatgacaatgagacacctaaggttggcagtgaccttaagaaggaagctgaagaaggatccgaagacaaagccactaagtcaactgagaagacaaaggatgatttgtctgaggatggtagcaacaagagtgccagtaaaccaaaggaggctagcagcggaggcaaggatttgaagggtgagagcaaaccaagtgaaggaagagccaagccaggtcgaaagccaaaggttgccgctgctgcggtggctggtgaggaatctaaggccaatgtctcagctgagaaagagaagcagaaggaagcagaaggtgaggcagcagctgaagtggagcaggggggatctgctggtggtgcttctactggaggaaagaagcgcagaaggaaggcttga

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Protein seq

MAELGELEGKLRDVGEKLQSPPDDVDALLKLIHEAEIYILKVEQAPSESMISAITPAMKALIKKELLDNSSYEVKLSVVSCISEITRITAPDTPYDDDVMKDVFSIMVGSFEKLDDMENPLFRRIVAILETVAKVRLCVVMLDLECEDLILQMFHNFFTTVKPNHPENVTNCMTTIMILVIEEDDEVEIPIAECLLKHAKSELKETSAASFELAEKVIGACSEKLKPVFLQLLKGTSLNEYDNIIATICEDSSDVKEDMDADPSGKDVVDDGKLSERTISDELPQEPAKLEQDVTQTTAIGSGATPVDNGTESAAANPKELSNPDSEKKDGVKQSAKVANGASAETSERVDGSPAMVKSKRGRPPGLKSLEKKAAGKKVLGLKKVEETTDSTGKLSKQSSKDDSKSSTRKASGAGSSKKQQKISLKQKDETDSKEDTAKDLSLKEMVSPKSVSKGSAKTKGSQGQDNNGSKRKRSQEDEQETPRSRKNKGLDASLVGARIQVWWPDDKKFYKGIVDSFDTASKRHKIAYDDGDVEVLLLRDEKWEFVSEEQDKTPDVASEISPKPRGRGRKGRGSSVQLKEGNAETPKSGGGDLPKKRGRPKGSSNGTPKSNISATSSKSKGKAARKDDNETPKVGSDLKKEAEEGSEDKATKSTEKTKDDLSEDGSNKSASKPKEASSGGKDLKGESKPSEGRAKPGRKPKVAAAAVAGEESKANVSAEKEKQKEAEGEAAAEVEQGGSAGGASTGGKKRRRKA

Function Sister chromatid cohesion protein PDS5 homolog A [UniProtKB/Swiss-Prot:Q5F3V3]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_02g0024480 OsLiXu_02g0024480.01 Chr02 25465383 25472438 - NAM
CDS seq

atggcggagctcggggagctcgaggggaagctgagggacgtcggggagaagctccagtctccccccgacgacgtcgatgccttgctcaagctcatccacgaggccgaaatatatatattgaaagtggaacaagcaccttctgaaagcatgattagtgctataactccagcaatgaaagctttgatcaagaaagagctgttggataattctagctatgaggtgaaactttctgtggtgtcctgtatttctgagataactaggatcactgcacctgacactccatatgacgatgatgtcatgaaggacgtgttttccataatggtggggtcttttgagaaattggatgatatggagaaccccttgtttcgaaggatagttgcaatccttgaaactgtggcaaaggtccggctatgcgtggtgatgttggatcttgagtgtgaagatctgatactgcaaatgtttcacaacttcttcacaactgtgaaaccaaatcacccagaaaatgttacaaactgtatgactacaataatgattttggtaattgaagaggatgatgaagttgagatacccattgcagaatgtctgctcaagcatgctaagtccgaactgaaggaaacttctgctgcatcttttgaacttgcagagaaggtgataggtgcatgctctgaaaaactgaaaccggtctttctgcagttacttaaaggcacttccttgaatgaatacgacaatattatcgcaacaatttgtgaagacagttcagatgtcaaggaagacatggatgctgatccttctggaaaagatgtggtggatgatggcaaactttctgaaaggactatttctgatgagctacctcaggaacctgcaaagttggagcaagatgttactcagactactgctattggcagtggtgcaactccagttgataatggcacagaatctgcagctgctaatcccaaggaattatccaatcccgattcagagaaaaaggatggtgttaagcagtcagcaaaggttgccaatggagcttctgctgaaacatcagaacgtgttgatggctcaccagctatggtcaaatcaaaaagaggtcgacctcctggactaaagtcattggagaagaaggctgctggaaagaaagttctaggtctgaaaaaggttgaggagactactgattcaacagggaagttatcgaagcagtcatctaaggatgattccaagtcatctacaagaaaggcaagtggagcagggtcatcaaaaaagcaacaaaagatcagtttgaaacagaaggatgaaactgactccaaggaagatactgctaaggatctgagcctaaaggaaatggtctctccaaagtccgtgtccaaggggtcagctaagaccaagggcagccaaggccaggacaataatggctccaagaggaaaaggtcacaagaggatgaacaagagactcctcgttctaggaagaataaaggccttgatgctagccttgttggtgcaaggatccaagtatggtggcctgacgacaagaagttttacaagggcattgttgactcatttgatacagcttcaaaaaggcacaagattgcatatgatgatggagatgtagaggtgcttctccttagggatgaaaagtgggaattcgtcagtgaggaacaagacaaaacccctgatgtggcttccgagatttccccgaagccacggggtaggggcagaaaaggaagagggagctcagtgcaattgaaggaaggaaatgcagaaacacctaaaagtggtggaggcgatcttcccaaaaaaaggggtcgtccgaaaggttccagcaatggtacacccaaaagtaacatctcggcaacttcaagcaaatcaaaggggaaagctgcaaggaaggatgacaatgagacacctaaggttggcagtgaccttaagaaggaagctgaagaaggatccgaagacaaagccactaagtcaactgagaagacaaaggatgatttgtctgaggatggtagcaacaagagtgccagtaaaccaaaggaggctagcagcggaggcaaggatttgaagggtgagagcaaaccaagtgaaggaagagccaagccaggtcgaaagccaaaggttgccgctgctgcggtggctggtgaggaatctaaggccaatgtctcagctgagaaagagaagcagaaggaagcagaaggtgaggcagcagctgaagtggagcaggggggatctgctggtggtgcttctactggaggaaagaagcgcagaaggaaggcttga

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Protein seq

MAELGELEGKLRDVGEKLQSPPDDVDALLKLIHEAEIYILKVEQAPSESMISAITPAMKALIKKELLDNSSYEVKLSVVSCISEITRITAPDTPYDDDVMKDVFSIMVGSFEKLDDMENPLFRRIVAILETVAKVRLCVVMLDLECEDLILQMFHNFFTTVKPNHPENVTNCMTTIMILVIEEDDEVEIPIAECLLKHAKSELKETSAASFELAEKVIGACSEKLKPVFLQLLKGTSLNEYDNIIATICEDSSDVKEDMDADPSGKDVVDDGKLSERTISDELPQEPAKLEQDVTQTTAIGSGATPVDNGTESAAANPKELSNPDSEKKDGVKQSAKVANGASAETSERVDGSPAMVKSKRGRPPGLKSLEKKAAGKKVLGLKKVEETTDSTGKLSKQSSKDDSKSSTRKASGAGSSKKQQKISLKQKDETDSKEDTAKDLSLKEMVSPKSVSKGSAKTKGSQGQDNNGSKRKRSQEDEQETPRSRKNKGLDASLVGARIQVWWPDDKKFYKGIVDSFDTASKRHKIAYDDGDVEVLLLRDEKWEFVSEEQDKTPDVASEISPKPRGRGRKGRGSSVQLKEGNAETPKSGGGDLPKKRGRPKGSSNGTPKSNISATSSKSKGKAARKDDNETPKVGSDLKKEAEEGSEDKATKSTEKTKDDLSEDGSNKSASKPKEASSGGKDLKGESKPSEGRAKPGRKPKVAAAAVAGEESKANVSAEKEKQKEAEGEAAAEVEQGGSAGGASTGGKKRRRKA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 2.068528 1.734761 3.780604

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0612800 RBH 8.919925 4.323403 17.124744
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g39920 RBH 3.631843 1.931076 3.021149
Nipponbare | IRGSP 1.0 | RAP-db Os02g0612800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0024690 RBH 2.117397 19.772327 23.208807
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0024840 RBH 0.514575 7.391487 8.375269
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0024840 RBH 3.384863 13.751342 34.586582
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0024490 RBH 0.640451 0.679928 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0024380 RBH 14.271522 21.877308 50.087120
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0024210 RBH 0.660347 1.127838 5.135205
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0393100 SBH 22.952732 28.6512635 36.797375
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0024460 RBH 0.483152 0.611272 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0024460 RBH 0.844654 28.234081 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0024770 RBH 9.128278 58.878181 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0018940 SBH 1.576586 1.042844 1.622586
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0024230 RBH 1.070709 10.786420 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G024650 RBH 1.426939 12.570844 8.137789
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0024500 RBH 4.091683 46.449944 23.415834
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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