Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0022780 | OGI:02064900 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:24184876-24188051 | ||||||||
| Gene Symbol | UGT | ||||||||||
| DNA seq | tcaggcttgcgcagcagctgctgcttgtttctctctggggatccaaggtggagAtgagggatgaggacgccacatgtggcgagcttggccagcggtgcaactcgtcctacaccactccatcgtcaacaTGggtcaacatgccacgtagatgctacgccagcgaaaaccatcgtctatactgccctGatagttattgtgcAtcagttttaatagttgaaagagtcattatacctgattttgtgattcggggatacaaatcatatccgagatatatttgagagagttagattagaatttttccttaaaaaaagttgggccacattaataatttgagagaagttgggcccatcctcgcaacccttttcggctctccgctcgcaccaccaccgatctcatcgaatcacctcctcgagacaacaaggggaagtgcGgaatggagctaagtttctttacccaaacAacttGgttatgaGggtttctatttcactggtatttctggtcaccaaaatttacaGgtgtttcctttacacgtgagaaaaaagaaaaacgataactcctaagcaggccctaaagttttattGtttgaaaaaatagcaacaagttAccccacaaatgcatagAacaacaaagccaccaCaattccacatgtactttctcggttttataatagcgtcgttttgattttttgcctactcaatttttttaatagttttgatcAaatatAtaaaaaaaataaatattttcaatataaaaCaaacatattatgaaaatatattcagtgttataTttaatgaaactaatttggtgttatatatgttactaaAtatgttgacttagtgaaacttaagattatttttttAaaaaaaaTAaagcgacttgcacattacgaaaAGaGtattacatccgtttcaatatatattataagtcgttttaaCacCtttttttgactcaacTttttaaatgtgatcaaatttatagaaaaatatagcaacatttttaacacaaaacaaacatattatcaaagtatattaaataactaatttgatgttttagatattgctaattttttcaatAaacttattcaaatttaaagaagtttaactagaaaaatattaaaatgacttatgatgtgaaactgaaaaaggaagtaaggtactatttcttccatcttataatatcgaggcgactacggatcaggtgcccgatttttttagaaaaatcaagcgcccacgtcatcatgatgtcatcttgcatgcatgcatctaagcgaactttaaaatatttaTtctcttaaattaTttatccaaatcatgatccgattgtaccattaaatctgttgcaattaaatctttaaaacaagaccacacatggatataatccaatgAaaaaaatagctcattatagaattatatttaaatattgcacgctgttacaccaagtatatcagaaTtgtttcactaattagatcgaaaatgtttcatcggacgctgtttgaccttatatatgaaaacaatgtttcagcaaatagcgaaagaatgtttcaattcactgcaacatttaatccatacatagcgaaacatcacgagcatactaggtcaaacatttttggtggAacaaaaaatgaaacggatttccttaacagaggatttccatAatatccataatataTgggtaatttattgcaaaagaatgtttcaattcactgcaacatttgatccgtacatagtaaaacattgtgaatatactaaacgaatcaaatcTtTGAtggaacaacaaatAaaacggacatgcgaatcttaggcagggatgatgtgtccaatggaggtacgtactaataaccagtccttgtcgttgtataggacctgagctgctgaatgaaagcgtcgatgcacctctcgtgacactccgtgtcggccaccacctcccccatcttcccggcgttggcggcgagcgccttcttgctctcttcatccaccacggcggcccggacggctgcggcgacgccgtcccggtcgaaggcgctgCCGTGCTCGCCATCCCTGGCCACCTGCACCCCAACCCCTCTCGCCCCTTCCAAGTAGCTCGCGTTCGTGAACTGGTCGAGGAACAGTGGCAGCATGACGAGAGGATGGCCGAACCGGAGCCCCTCGATGACGGAGCTGTGGCCGCAGTGCGTCAGGAAGGCGCCCACGGCGGCGTGCGCCAGGATCTTGAGCTGGGGCACCCACCCCGTCTTCACCATCCCGCGCCCGCGCGTCCGCTCCTCGAATCCCGGAGGCAGGAGGCCGCCGTCGTCGTCGCTGCCGTGAGGCTTCCTCAGGGCCCAGAGGAAGGGCGCGCCGGgagagctccagcccgagcgccagctcgcgccgctgctccgcggtcagcggcgcctcgctcccgagcgcgacgtagacgacggacttgggcggctgcctgtcgagccacgaggacatgagagctgtgtcgccgtcgccgtcaacctgcggcggcgggagaaggccgatggggacgaccggcttgccgaagatgttcgacaggagaggcaccgactcgggctcgaactccacgcagctccgcacggcgagaagctcgctgctCcggaaggccaagacgaaccgccgggctatggcggaGgggaaacggtcggcgttccgcgcctcatccGgcacgccgaaatgcgcgcacgccgtcgccgtgtacggcatcatgaggacgcagggaaccttgcggtcggcggcggaggcggcggcccaggaaagcatgccgtcgaggatgagccagtcgaccttgttccccgcggcggcggcggcggcgtcgaggaaggcggagaagggcgcggtgagcccatcggaggccttccagagagcggatgacatgtgatcggggacgtcggtggtggcctcggcgccgtcggggaggccgtcgacgcgcgggagcggcagctcgacgaacttgacggacgggcacgggcggcggaggcgagcgatgttgcgcggggtggagacgaaggacacgcggaggccgcgcgaggccaggcggccggcgagctcgagggcagggaggaggtggccgaacgcgagccacgggaagacgacgacgtgcagcggggaggcatccatggtgcagcttgtgaagtttgaggagagaagattagaacatataatggcagt
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| CDS seq | atggatgcctccccgctgcacgtcgtcgtcttcccgtggctcgcgttcggccacctcctccctgccctcgagctcgccggccgcctggcctcgcgcggcctccgcgtgtccttcgtctccaccccgcgcaacatcgctcgcctccgccgcccgtgcccgtccgtcaagttcgtcgagctgccgctcccgcgcgtcgacggcctccccgacggcgccgaggccaccaccgacgtccccgatcacatgtcatccgctctctggaaggcctccgatgggctcaccgcgcccttctccgccttcctcgacgccgccgccgccgccgcggggaacaaggtcgactggctcatcctcgacggcatgctttcctgggccgccgcctccgccgccgaccgcaaggttccctgcgtcctcatgatgccgtacacggcgacggcgtgcgcgcatttcggcgtgcCggatgaggcgcggaacgccgaccgtttcccCtccgccatagcccggcggttcgtcttggccttccgGagcagcgagcttctcgccgtgcggagctgcgtggagttcgagcccgagtcggtgcctctcctgtcgaacatcttcggcaagccggtcgtccccatcggccttctcccgccgccgcaggttgacggcgacggcgacacagctctcatgtcctcgtggctcgacaggcagccgcccaactctcCCGGCGCGCCCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCAGCGACGACGACGGCGGCCTCCTGCCTCCGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGGGTGGGTGCCCCAGCTCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCGTCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACGAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCAGGGATGGCGAGCACGGcagcgccttcgaccgggacggcgtcgccgcagccgtccgggccgccgtggtggatgaagagagcaagaaggcgctcgccgccaacgccgggaagatgggggaggtggtggccgacacggagtgtcacgagagagagaaacaagcagcagctgctgcgcaagcctga
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| Protein seq | MDASPLHVVVFPWLAFGHLLPALELAGRLASRGLRVSFVSTPRNIARLRRPCPSVKFVELPLPRVDGLPDGAEATTDVPDHMSSALWKASDGLTAPFSAFLDAAAAAAGNKVDWLILDGMLSWAAASAADRKVPCVLMMPYTATACAHFGVPDEARNADRFPSAIARRFVLAFRSSELLAVRSCVEFEPESVPLLSNIFGKPVVPIGLLPPPQVDGDGDTALMSSWLDRQPPNSPGAPFLWALRKPHGSDDDGGLLPPGFEERTRGRGMVKTGWVPQLKILAHAAVGAFLTHCGHSSVIEGLRFGHPLVMLPLFLDQFTNASYLEGARGVGVQVARDGEHGSAFDRDGVAAAVRAAVVDEESKKALAANAGKMGEVVADTECHEREKQAAAAAQA |
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| Function | Putative UDP-rhamnose:rhamnosyltransferase 1 [UniProtKB/Swiss-Prot:Q66PF2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0022780 | OsLiXu_02g0022780.01 | Chr02 | 24184876 | 24188000 | - | NAM | ||
| CDS seq | atggatgcctccccgctgcacgtcgtcgtcttcccgtggctcgcgttcggccacctcctccctgccctcgagctcgccggccgcctggcctcgcgcggcctccgcgtgtccttcgtctccaccccgcgcaacatcgctcgcctccgccgcccgtgcccgtccgtcaagttcgtcgagctgccgctcccgcgcgtcgacggcctccccgacggcgccgaggccaccaccgacgtccccgatcacatgtcatccgctctctggaaggcctccgatgggctcaccgcgcccttctccgccttcctcgacgccgccgccgccgccgcggggaacaaggtcgactggctcatcctcgacggcatgctttcctgggccgccgcctccgccgccgaccgcaaggttccctgcgtcctcatgatgccgtacacggcgacggcgtgcgcgcatttcggcgtgcCggatgaggcgcggaacgccgaccgtttcccCtccgccatagcccggcggttcgtcttggccttccgGagcagcgagcttctcgccgtgcggagctgcgtggagttcgagcccgagtcggtgcctctcctgtcgaacatcttcggcaagccggtcgtccccatcggccttctcccgccgccgcaggttgacggcgacggcgacacagctctcatgtcctcgtggctcgacaggcagccgcccaactctcCCGGCGCGCCCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCAGCGACGACGACGGCGGCCTCCTGCCTCCGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGGGTGGGTGCCCCAGCTCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCGTCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACGAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCAGGGATGGCGAGCACGGcagcgccttcgaccgggacggcgtcgccgcagccgtccgggccgccgtggtggatgaagagagcaagaaggcgctcgccgccaacgccgggaagatgggggaggtggtggccgacacggagtgtcacgagagagagaaacaagcagcagctgctgcgcaagcctga
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| Protein seq | MDASPLHVVVFPWLAFGHLLPALELAGRLASRGLRVSFVSTPRNIARLRRPCPSVKFVELPLPRVDGLPDGAEATTDVPDHMSSALWKASDGLTAPFSAFLDAAAAAAGNKVDWLILDGMLSWAAASAADRKVPCVLMMPYTATACAHFGVPDEARNADRFPSAIARRFVLAFRSSELLAVRSCVEFEPESVPLLSNIFGKPVVPIGLLPPPQVDGDGDTALMSSWLDRQPPNSPGAPFLWALRKPHGSDDDGGLLPPGFEERTRGRGMVKTGWVPQLKILAHAAVGAFLTHCGHSSVIEGLRFGHPLVMLPLFLDQFTNASYLEGARGVGVQVARDGEHGSAFDRDGVAAAVRAAVVDEESKKALAANAGKMGEVVADTECHEREKQAAAAAQA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0022780 | OsLiXu_02g0022780.02 | Chr02 | 24186557 | 24188051 | - | IsoSeq | ||
| CDS seq | ctgccattatatgttctaatcttctctcctcaaacttcacaagctgcaccatggatgcctccccgctgcacgtcgtcgtcttcccgtggctcgcgttcggccacctcctccctgccctcgagctcgccggccgcctggcctcgcgcggcctccgcgtgtccttcgtctccaccccgcgcaacatcgctcgcctccgccgcccgtgcccgtccgtcaagttcgtcgagctgccgctcccgcgcgtcgacggcctccccgacggcgccgaggccaccaccgacgtccccgatcacatgtcatccgctctctggaaggcctccgatgggctcaccgcgcccttctccgccttcctcgacgccgccgccgccgccgcggggaacaaggtcgactggctcatcctcgacggcatgctttcctgggccgccgcctccgccgccgaccgcaaggttccctgcgtcc
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| Protein seq | LPLYVLIFSPQTSQAAPWMPPRCTSSSSRGSRSATSSLPSSSPAAWPRAASACPSSPPRATSLASAARARPSSSSSCRSRASTASPTAPRPPPTSPITCHPLSGRPPMGSPRPSPPSSTPPPPPRGTRSTGSSSTACFPGPPPPPPTARFPAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.862654 | 0.159684 | 0.518557 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0589400 | RBH | 3.955286 | 2.139429 | 2.917471 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37690 | RBH | 2.380965 | 1.273383 | 0.664604 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0589400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023000 | RBH | 0.0 | 1.938496 | 6.963161 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023100 | RBH | 0.0 | 1.530470 | 2.827433 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0023070 | RBH | 0.993958 | 5.330215 | 3.944090 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022800 | RBH | 0.041741 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022720 | RBH | 2.781970 | 9.763400 | 21.299143 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0372800 | RBH | 9.9023575 | 1.860481 | 1.087889 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022450 | RBH | 0.163992 | 0.135818 | 0.664510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0400000 | RBH | 18.764383 | 2.171476 | 4.9389015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022890 | RBH | 0.158770 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022640 | RBH | 0.480116 | 4.257983 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023080 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015530 | SBH | 0.236714 | 0.287349 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022580 | RBH | 0.158905 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023030 | RBH | 0.084022 | 0.0 | 0.190163 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022890 | RBH | 0.0 | 0.000000 | 1.947680 |
