Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0015530 | OGI:04068760 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:24367239-24368877 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttgccctcctcactgaaaacagtaaacaggacacggttcagtgaccacacgaggttcacgagtacagtgacgcatacagagacatgggctccatcgcggccgacggcgacaagccgcacgccgtgtgcatgccgttcccggcgcaggggcacgtcacgcccatgctgaagctcgccaagatcctccaccaccgtggcttccacatcaccttcgtcaacaccgagttcaaccaccgccgcctcctccgctcccgcggcgccgccgcgctggacggcctcccggggttccgcttcgccgccatcccggacggcctcccgccgtccgacgccgacgcgacgcaggacgtgcccccgctctgccgctccaccagggagacgtgcctccctcacttcagccgcctcctcgccgacctcaacgccaacgcctcccccgagtccccgcccgtcacgtgcgtcgtcgccgacgacgtcatgagcttcgccgtcgacgccgccagggagttccgcgtgccgtgcgcgctcttctggacggccagcgtctgcggctacatgggctaccgctactaccgttccttcctcgacaagggcatcttcccgctcaaaggtaaaccctgagcttttacgagaagaaaatcggtttccattcatgggtggacacacgcatgcatgcagaggagcagctgacgaacgggttcttggacgcgccggtggactggacgccggggatgagcaagcacctgcggctcaaggacttcccgtcgttcttccgcgcgacggaccccgacgagtacatgttccacttcgcgctccacgtgacggagcggctggcggaggcggacgccgccgtgctcaacaccttcgacgagctcgagccggaggcgctcgacgcgatgcgcgcgatgctgccgccgtcggtgtccatccacaccatcggcccgctcgggttcctcgccgagcaggtcgttcccaaggggagccccctcgacgcgctgggctccaacctgtggaaggaggacgactcctgcttcggctggctcgacggcaagccgccccggtcggtggtgttcgtcaactacggcagcgtcacggtgatgacgaacgaggagctggttgagttcgcgtgggggctcgccaacagcggccacgacttcctgtggatcgtccgccccgacctcatccacggcgacgccgccgtgctgccgccggagttcatggagtccgtcggggggcgcggcctgctggcgagctggtgcccgcaggaggcggtgctgcggcacgaggcggtgggcgtgttcctgacgcactccggctggaactcgacggtggagagcctctgcggcggggtgccgatgctgtgctggccgttcttcgcggagcagcagaccaaccgccggtacagctgcaccgagtggggcgtcgccatggagattgacgacgacgtgcggcgcgacgcggtggaggccaagatacgggaggcgatgggaggagacaagggccgggagatgcgccgccaggcgggcgagtggaaggagaccggcctccgcgcgacgcgccccggcggccgcgcgcacgccagcctcgacgcgctggtcgccgacgtcctcctctccggtggcaaggctcggtaggacaacgtgc
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| CDS seq | atgggctccatcgcggccgacggcgacaagccgcacgccgtgtgcatgccgttcccggcgcaggggcacgtcacgcccatgctgaagctcgccaagatcctccaccaccgtggcttccacatcaccttcgtcaacaccgagttcaaccaccgccgcctcctccgctcccgcggcgccgccgcgctggacggcctcccggggttccgcttcgccgccatcccggacggcctcccgccgtccgacgccgacgcgacgcaggacgtgcccccgctctgccgctccaccagggagacgtgcctccctcacttcagccgcctcctcgccgacctcaacgccaacgcctcccccgagtccccgcccgtcacgtgcgtcgtcgccgacgacgtcatgagcttcgccgtcgacgccgccagggagttccgcgtgccgtgcgcgctcttctggacggccagcgtctgcggctacatgggctaccgctactaccgttccttcctcgacaagggcatcttcccgctcaaagaggagcagctgacgaacgggttcttggacgcgccggtggactggacgccggggatgagcaagcacctgcggctcaaggacttcccgtcgttcttccgcgcgacggaccccgacgagtacatgttccacttcgcgctccacgtgacggagcggctggcggaggcggacgccgccgtgctcaacaccttcgacgagctcgagccggaggcgctcgacgcgatgcgcgcgatgctgccgccgtcggtgtccatccacaccatcggcccgctcgggttcctcgccgagcaggtcgttcccaaggggagccccctcgacgcgctgggctccaacctgtggaaggaggacgactcctgcttcggctggctcgacggcaagccgccccggtcggtggtgttcgtcaactacggcagcgtcacggtgatgacgaacgaggagctggttgagttcgcgtgggggctcgccaacagcggccacgacttcctgtggatcgtccgccccgacctcatccacggcgacgccgccgtgctgccgccggagttcatggagtccgtcggggggcgcggcctgctggcgagctggtgcccgcaggaggcggtgctgcggcacgaggcggtgggcgtgttcctgacgcactccggctggaactcgacggtggagagcctctgcggcggggtgccgatgctgtgctggccgttcttcgcggagcagcagaccaaccgccggtacagctgcaccgagtggggcgtcgccatggagattgacgacgacgtgcggcgcgacgcggtggaggccaagatacgggaggcgatgggaggagacaagggccgggagatgcgccgccaggcgggcgagtggaaggagaccggcctccgcgcgacgcgccccggcggccgcgcgcacgccagcctcgacgcgctggtcgccgacgtcctcctctccggtggcaaggctcggtag
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| Protein seq | MGSIAADGDKPHAVCMPFPAQGHVTPMLKLAKILHHRGFHITFVNTEFNHRRLLRSRGAAALDGLPGFRFAAIPDGLPPSDADATQDVPPLCRSTRETCLPHFSRLLADLNANASPESPPVTCVVADDVMSFAVDAAREFRVPCALFWTASVCGYMGYRYYRSFLDKGIFPLKEEQLTNGFLDAPVDWTPGMSKHLRLKDFPSFFRATDPDEYMFHFALHVTERLAEADAAVLNTFDELEPEALDAMRAMLPPSVSIHTIGPLGFLAEQVVPKGSPLDALGSNLWKEDDSCFGWLDGKPPRSVVFVNYGSVTVMTNEELVEFAWGLANSGHDFLWIVRPDLIHGDAAVLPPEFMESVGGRGLLASWCPQEAVLRHEAVGVFLTHSGWNSTVESLCGGVPMLCWPFFAEQQTNRRYSCTEWGVAMEIDDDVRRDAVEAKIREAMGGDKGREMRRQAGEWKETGLRATRPGGRAHASLDALVADVLLSGGKAR |
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| Function | 7-deoxyloganetin glucosyltransferase [UniProtKB/Swiss-Prot:F8WKW1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0015530 | OsLiXu_04g0015530.01 | Chr04 | 24367239 | 24368877 | + | NAM | ||
| CDS seq | atgggctccatcgcggccgacggcgacaagccgcacgccgtgtgcatgccgttcccggcgcaggggcacgtcacgcccatgctgaagctcgccaagatcctccaccaccgtggcttccacatcaccttcgtcaacaccgagttcaaccaccgccgcctcctccgctcccgcggcgccgccgcgctggacggcctcccggggttccgcttcgccgccatcccggacggcctcccgccgtccgacgccgacgcgacgcaggacgtgcccccgctctgccgctccaccagggagacgtgcctccctcacttcagccgcctcctcgccgacctcaacgccaacgcctcccccgagtccccgcccgtcacgtgcgtcgtcgccgacgacgtcatgagcttcgccgtcgacgccgccagggagttccgcgtgccgtgcgcgctcttctggacggccagcgtctgcggctacatgggctaccgctactaccgttccttcctcgacaagggcatcttcccgctcaaagaggagcagctgacgaacgggttcttggacgcgccggtggactggacgccggggatgagcaagcacctgcggctcaaggacttcccgtcgttcttccgcgcgacggaccccgacgagtacatgttccacttcgcgctccacgtgacggagcggctggcggaggcggacgccgccgtgctcaacaccttcgacgagctcgagccggaggcgctcgacgcgatgcgcgcgatgctgccgccgtcggtgtccatccacaccatcggcccgctcgggttcctcgccgagcaggtcgttcccaaggggagccccctcgacgcgctgggctccaacctgtggaaggaggacgactcctgcttcggctggctcgacggcaagccgccccggtcggtggtgttcgtcaactacggcagcgtcacggtgatgacgaacgaggagctggttgagttcgcgtgggggctcgccaacagcggccacgacttcctgtggatcgtccgccccgacctcatccacggcgacgccgccgtgctgccgccggagttcatggagtccgtcggggggcgcggcctgctggcgagctggtgcccgcaggaggcggtgctgcggcacgaggcggtgggcgtgttcctgacgcactccggctggaactcgacggtggagagcctctgcggcggggtgccgatgctgtgctggccgttcttcgcggagcagcagaccaaccgccggtacagctgcaccgagtggggcgtcgccatggagattgacgacgacgtgcggcgcgacgcggtggaggccaagatacgggaggcgatgggaggagacaagggccgggagatgcgccgccaggcgggcgagtggaaggagaccggcctccgcgcgacgcgccccggcggccgcgcgcacgccagcctcgacgcgctggtcgccgacgtcctcctctccggtggcaaggctcggtag
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| Protein seq | MGSIAADGDKPHAVCMPFPAQGHVTPMLKLAKILHHRGFHITFVNTEFNHRRLLRSRGAAALDGLPGFRFAAIPDGLPPSDADATQDVPPLCRSTRETCLPHFSRLLADLNANASPESPPVTCVVADDVMSFAVDAAREFRVPCALFWTASVCGYMGYRYYRSFLDKGIFPLKEEQLTNGFLDAPVDWTPGMSKHLRLKDFPSFFRATDPDEYMFHFALHVTERLAEADAAVLNTFDELEPEALDAMRAMLPPSVSIHTIGPLGFLAEQVVPKGSPLDALGSNLWKEDDSCFGWLDGKPPRSVVFVNYGSVTVMTNEELVEFAWGLANSGHDFLWIVRPDLIHGDAAVLPPEFMESVGGRGLLASWCPQEAVLRHEAVGVFLTHSGWNSTVESLCGGVPMLCWPFFAEQQTNRRYSCTEWGVAMEIDDDVRRDAVEAKIREAMGGDKGREMRRQAGEWKETGLRATRPGGRAHASLDALVADVLLSGGKAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.236714 | 0.287349 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0451200 | RBH | 3.693025 | 2.133952 | 0.939612 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37820 | RBH | 2.437347 | 1.440368 | 0.178540 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0451200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015200 | RBH | 0.719842 | 1.531895 | 1.479703 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016080 | RBH | 0.316297 | 0.0 | 0.698232 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015800 | RBH | 4.150134 | 1.942718 | 0.939773 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015390 | RBH | 0.351419 | 0.037547 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015690 | RBH | 1.785995 | 3.964783 | 3.242559 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0351400 | RBH | 2.7556465 | 4.978459 | 0.5723895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014550 | RBH | 0.639640 | 0.469548 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0348100 | RBH | 7.6489185 | 6.270883 | 2.222872 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015160 | RBH | 0.052559 | 0.053691 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014890 | RBH | 0.882885 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014930 | RBH | 15.420162 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0022130 | RBH | 0.046457 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015670 | RBH | 0.075153 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014780 | RBH | 0.608648 | 4.820745 | 0.683173 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014840 | RBH | 2.553128 | 2.485356 | 0.442705 |
