Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0017990 | OGI:02050950 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:18706473-18713492 | ||||||||
| Gene Symbol | ERF140, OsERF#140, OsERF140, AP2/EREBP#013, AP2/EREBP13 | ||||||||||
| DNA seq | atctctcttctttgtatCccccgtcgccaacttctcctaccaacttctctctctcTttttttctcctcctcctcttcttcttggtggccgctcgccgccgccgacgccgacgccgccggcgggtctcgtcgtcggtacgtgttactacgggggccggtctgtggcccctaccctccgtcgccgtcgtcttttcttgttcgcgtgtgcgtttatttctcggccagaggttggcggcttccggcggttcttggattccggcaggattgatcggcgtggtgtttcttggcccccccgcgaattccggcggcattctgatggcgtgcttcttctctcttctttttttctcttgctggttgttttgttgagttcgtgtggggtggtaggattggaaggtggcggtggttggggggtctttgggtggtgagggaagggggtgaattctctgtgttcttgggggttgttgttgttatcatctgagcctcttaggattggttgggtggcggaaggttggttgttgccacctgccctgttcgtgtttgcgattgatttgtactacacagtgggtgcttctcctatgtgcaaatcagataattccgcggtaacaaagtcagcgtaggattatgttggtgatgatgatgactagtgtgcctgaaaattccatctttgcagtagtccttggcttgataatacagatagattctttgcagagttcgtgcacttcactgtcacaacaaagaaatcttttttcctcaagagttaaattctagtaggattcgttggattctgtaggccctggagtgtgcttgctaggtctgtgctaactgttagtggtgactggtgacaagtacatcaccttgatttcttcTttttttttttcactcactatttttagggcgtttatttggttactcctttcgccgagtttcggttaaagctgacctgtgcctccacgtgacgttagtggggcttttgtcagatgatacagctctgttgaggatcgtgctggacattgctgcactgtcagcatccttgttcctttgctgtctatttgagccctcaatttccagtgcctgtagtactcttcactgtctccatggaagttgtaggcctgttgaatgttgatgtcttattgtcaacagttttgttcccagagattgataactcacatgagtttatcagtttttgtagtacgattggctcctttagattccattttattgattagtaacttaatgctaataagtaaaaagatatgagtgtgatcttccacatttgtttgttagtgcattaacccgccactaggtttgccagtcgcatctatgtgctactatcacaaaacattttttttttgtctattgatgtgaagaacaaatagtcaatattattctgtatatatttggcaatatggttaagattaccattcatagggaagaaatagatatggccaataagagaagtgtaacgtaattccagttcgagaaatggtggcagtaccaaatgccgaattagcggctgtaccaaatgatcaatgcctctggggtttcccttctcttcagctctccccggtttcaccaatgtgttgggcactgaacactgttgttgtttccagcaggctagtattgtctaatgtaatcaaaagctcttgcattaattgcgacacacttatttctctcacgatgtctccatatttgaacctaaaacctttttttatacaaccttatagtactcgcttttataattggtttagaaaatcttatatttctaactatattgcaggtggcattgaaatatggttagcttgaggaggcgccggcttttggggctttgttctggtatgagactcactgcaatgtcatgatttgtttcctgatatgtttatgtaatttttcagaggaactctgttgtgaaaatgtgctactttatttacttacaagttatatacaaagtcatcatagcatgtctttcttggttatgcttatcaattctattatgatctgactcttcaatggaacatgctatacctactctttcagattaaaaaaagcagtactgtgcacccaatttacaaatatcatgtacatgaaatttcttgattttgtttctctattggtataccatctgtagtcagcttccgttgatacaactttgcaactccttgtatacgtgttttatgttgctccccatggtgtataagttagtgggattgggaaattatctggagaccataggaggaatttgaatagtcaatggaccttacaagaacatgatttggctgcgaactaattgcttccagcaccagaattatctgtgcaaagaatttagacgggagttgccgtagccctgatggtaccatgattagatggagcacgtataatctgttccatattgcatggtgtggaatgaagtactttaaacatttttctgctgactggttagcttactatgagcagtctttgcaaaatttattatggaaatcaataagggaaggctttctatatatgtcgtgcttcctctaccgttcttgtaatttttattcaaagatgtatatcagtgccctttgtgggttaaaaatcaattttgtttaaagagtaagttgcattgcccaccatctgattgtaaacacagcagcttgcactatttgtaagttaacacaccacttccaccttctaagttcacagaagttgggctctctgaaccaggttcagtggttcatgaacattatgtgaggtgggatgcacccaaatgctggtgtagcaatggccagaggccattcattgtcctgttaggatgctgtgccatactgaaggtgatttctttgggggcatgtctgagctggcttattcacccacacaggaggtgaaagtgaattccttgttttgcaatggcataacagaacggtcaagccgattctcaccctccatttggttagctcctgacatcacaggtcatgttggacacacctgggtctttgttcacatggatatatgagccatttcgtggatgtgcccacagaggtctcaatgcaccatttccatctcattgtcggaatgaggcaaacctgtaacaataaacatgcttttacatggcggaagagtgctcaatttgtccaaattacatggtggaagatgatattttaatgtgttaaatgtcacaagctgcggttttacatgaacagatggtgcaaaattgcatattacttatgtttaaataaatttagagggctatcgcaaatgtcagcgtcaagtgttctggtattcttttctgaagctacacgtaactctagaagtatttcagcaagaagggtgtaagttcatactattgtgtaggcacacagaaatgaaacaagggcagatgtagccagattcgtgcaactatacaaatcctaatatagtaagacatcgtaactacaaatatgctgtgtgaatcactgttagaagcacatggcttctggtgaactgttgatttgaccaacaatcgagattacggacaaaatactattggcaaaataagattatttcgaagtatgactatattgttttctcatcgtacttcttcccatgaacccaagcaaggggatcatttatgcaacacatacctccctagacagctagaccaatgaatgtattatgcgtacactttgaacgctcatattaatttaccttttgtttcagggaaagattcgttaccggttgattttccaaagcctagtgacaatgaaaattctgtggaagttgcacaccctaacataaagccattcagtgtgcacccgctgcccctggtaagtttaacacctcaatgccagtacaactttgctgcaaaaatgttttgctagttgccaccttgtgttgtgtttgattatctgtgaaaaccatgctatcacagtttctatttatagttaatggatattacaagttatggtatattcaagcatatcaccaaagtttctgtgacagaactctgacaatcattttcgcaagttaatttaccattgttggtttaatctttactttgatttttaccattttaattgtattttagaatagtgtgaataaaataactgtattttcgcaaggctgtcattgaccataaaattatactaccaaattagcaccttcaaaaaactaatggtatgatttaaggagttcaaatttatacccactacattgataaatccttgtcaacttttactaaaatggagttaccttggcaataatttgtttatgcccattttgacttctccattaataactggattatgggtccactgcgtttttggcgggcaagtaaatgaggaaaattaatgaggccaaatgagtgaatattaattggaaagcactcatgggctcgtggcacatatttgtgaacaaataaagtagtaaaaagccatagtaaaaagttataagtatttgtgaaggatatcaaaatcgaatgggattctgattttggttttgaacttcgaatatgtcagaaatatattcagttgctctttctctgacaataaatggtacaacctgtggcttttcagaaataacacgtcaggcactgacaagctatttcttaacatagcgctgtaagatagattgtgcttgactgctccttgtgtcaatggactactttgatggtgttctctttttatcatatctactttaccttctagtacttttatctacatggtgggaaaataagtaaaaccaatggattgaataacaagattgctgctcttgtttgttttgttgcagtgccacttttcaacagtagcttcatgtgttatactaattccttttttttcttctgtttcatatggtttgctttatagtgactccttagaaactacattattttctgatgcttctgaacacatgctatttgcactggcaacgatggttttgtttgataaaatgtacctttttgttgcagactaaaaattctgatgtacttctggaatcttcaaatgggtctgattctttaaaggaagagaaaaaccattactatccaggttcatattatttcatagtactctttgtatttccttaaagtatatagtccaggtaaattttatatggcaaatggttgttttataattcggtatcagaaatcttatctaggtacaactctataatagtcccatcaaattaggctgactttgaacttcttgaatcatgatgaaactgaatccattcttggcccaactttctcattgaagcattgaacacaacaggatatattatgttttagcaaccaatagaaaggacgcttctgatccatgaacagacttgcacatgaattgagattaccccgaacgtgatgtcgaggatgaaactgctctcaccaaaaccagatagagttgaattacataactaggtgacctgacctgggatgtttcactagagccttttctttctctaaaagattctacctgttcttttccatgaattccctttttttattcatgttcagaaactcttttgttattttatttcagatttgcattggttaccttcatccttaatgaggtatccaaaggcataagctgaacgtgtcatttttattttgacaaaaatataatttgcttccttttatatttataggcaaggaaatcaagcgcagaaaacgacatagaagaaagcagtatgtggaccaagaaccatgcataatgagaggggtctacttcaaaaacatgaaatggcaagctgctataaaagttgacaagaaacaaatccacttaggtactgtcgggacacaggaggaagcagcccgactatatgataggtattagctggacttttatgcacgattatgatatttctatctttgcatataatatcatgttctgctttgttagtaatatgctgatacttgtatacaatactataaatctaatttactttaatatcatgaagaagtgatatattgatatatgctagaaaatattacaaaggaactagctagtctgcaaagttatcggagtaatagccaaaaatttttagaagcaccttcaccaaaacagtacaatgttgctttatcaaatctgtttgttgtctcaataaactaaggtttttttattatataatgattaaagactgttaacatcctaaaagatcaatattgttccatgcttaaggtggactactcatcattgttggcatacaaccctcaagcctgtatacatacagtataggttgcatcatatgcatattacttcaaacgccacttgcatatctgccgcggccaactgatcataatttattgtgtaggagaagctgatattttgtttgaactgactagatttgacatatcaacacagggctgcttttatgtgtggaagggagccaaactttgaactttctgaggaagagaagaaagaactacagaattacacctggaaggacttcttggatatgactcgagacaccataaccagcaaaagtaagacgagaattttaaaatttcttgtggttgtcacttaatttttccctgctagtagtcaagtacatcaatatatatatcattagtagtagactataacatactttttgttcatttgtttgtcttcagaacaaaggaaagttggattaataaggcgcaataagacggactcgctggtaggacagagtgatggtgatactgagatgatcaatggtggcggctcatcgcactcggaagatggagatgctgagacctcagcatcttaattaagactgccaccagagttcatggacagccagattgggtctttcaacagattcgtttcaatgaagacataatttccatttaggtttttgttctctcaataattaatttcatgtgcataagggccctgatggtctgataaaggttaggctagagaaatcatgccatcccatataaagttggagatggtccattataggaacacatttctctgagcaaatgagcaatcatgtatagaaacaccaattcctgaactgtgtatatctttaccccaaatttctctacatgtaactagattacacatttaataaagaatttatttttcctttc
More
|
||||||||||
| CDS seq | atggttagcttgaggaggcgccggcttttggggctttgttctgggaaagattcgttaccggttgattttccaaagcctagtgacaatgaaaattctgtggaagttgcacaccctaacataaagccattcagtgtgcacccgctgcccctgactaaaaattctgatgtacttctggaatcttcaaatgggtctgattctttaaaggaagagaaaaaccattactatccaggcaaggaaatcaagcgcagaaaacgacatagaagaaagcagtatgtggaccaagaaccatgcataatgagaggggtctacttcaaaaacatgaaatggcaagctgctataaaagttgacaagaaacaaatccacttaggtactgtcgggacacaggaggaagcagcccgactatatgatagggctgcttttatgtgtggaagggagccaaactttgaactttctgaggaagagaagaaagaactacagaattacacctggaaggacttcttggatatgactcgagacaccataaccagcaaaaaacaaaggaaagttggattaataaggcgcaataagacggactcgctggtaggacagagtgatggtgatactgagatgatcaatggtggcggctcatcgcactcggaagatggagatgctgagacctcagcatcttaa
More
|
||||||||||
| Protein seq | MVSLRRRRLLGLCSGKDSLPVDFPKPSDNENSVEVAHPNIKPFSVHPLPLTKNSDVLLESSNGSDSLKEEKNHYYPGKEIKRRKRHRRKQYVDQEPCIMRGVYFKNMKWQAAIKVDKKQIHLGTVGTQEEAARLYDRAAFMCGREPNFELSEEEKKELQNYTWKDFLDMTRDTITSKKQRKVGLIRRNKTDSLVGQSDGDTEMINGGGSSHSEDGDAETSAS |
||||||||||
| Function | Ethylene-responsive transcription factor-like protein At4g13040 [UniProtKB/Swiss-Prot:Q56XP9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0017990 | OsLiXu_02g0017990.02 | Chr02 | 18710534 | 18713492 | + | NAM | ||
| CDS seq | atgcttctgaacacatgctatttgcactggcaacgatggttttgtttgataaaatgtacctttttgttgcagactaaaaattctgatgtacttctggaatcttcaaatgggtctgattctttaaaggaagagaaaaaccattactatccaggcaaggaaatcaagcgcagaaaacgacatagaagaaagcagtatgtggaccaagaaccatgcataatgagaggggtctacttcaaaaacatgaaatggcaagctgctataaaagttgacaagaaacaaatccacttaggtactgtcgggacacaggaggaagcagcccgactatatgatagggctgcttttatgtgtggaagggagccaaactttgaactttctgaggaagagaagaaagaactacagaattacacctggaaggacttcttggatatgactcgagacaccataaccagcaaaaaacaaaggaaagttggattaataaggcgcaataagacggactcgctggtaggacagagtgatggtgatactgagatgatcaatggtggcggctcatcgcactcggaagatggagatgctgagacctcagcatcttaa
More
|
|||||||
| Protein seq | MLLNTCYLHWQRWFCLIKCTFLLQTKNSDVLLESSNGSDSLKEEKNHYYPGKEIKRRKRHRRKQYVDQEPCIMRGVYFKNMKWQAAIKVDKKQIHLGTVGTQEEAARLYDRAAFMCGREPNFELSEEEKKELQNYTWKDFLDMTRDTITSKKQRKVGLIRRNKTDSLVGQSDGDTEMINGGGSSHSEDGDAETSAS |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0017990 | OsLiXu_02g0017990.01 | Chr02 | 18706605 | 18713492 | + | NAM | ||
| CDS seq | atggttagcttgaggaggcgccggcttttggggctttgttctgggaaagattcgttaccggttgattttccaaagcctagtgacaatgaaaattctgtggaagttgcacaccctaacataaagccattcagtgtgcacccgctgcccctgactaaaaattctgatgtacttctggaatcttcaaatgggtctgattctttaaaggaagagaaaaaccattactatccaggcaaggaaatcaagcgcagaaaacgacatagaagaaagcagtatgtggaccaagaaccatgcataatgagaggggtctacttcaaaaacatgaaatggcaagctgctataaaagttgacaagaaacaaatccacttaggtactgtcgggacacaggaggaagcagcccgactatatgatagggctgcttttatgtgtggaagggagccaaactttgaactttctgaggaagagaagaaagaactacagaattacacctggaaggacttcttggatatgactcgagacaccataaccagcaaaaaacaaaggaaagttggattaataaggcgcaataagacggactcgctggtaggacagagtgatggtgatactgagatgatcaatggtggcggctcatcgcactcggaagatggagatgctgagacctcagcatcttaa
More
|
|||||||
| Protein seq | MVSLRRRRLLGLCSGKDSLPVDFPKPSDNENSVEVAHPNIKPFSVHPLPLTKNSDVLLESSNGSDSLKEEKNHYYPGKEIKRRKRHRRKQYVDQEPCIMRGVYFKNMKWQAAIKVDKKQIHLGTVGTQEEAARLYDRAAFMCGREPNFELSEEEKKELQNYTWKDFLDMTRDTITSKKQRKVGLIRRNKTDSLVGQSDGDTEMINGGGSSHSEDGDAETSAS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0017990 | OsLiXu_02g0017990.03 | Chr02 | 18706473 | 18713492 | + | IsoSeq | ||
| CDS seq | tctctcttctttgtatCccccgtcgccaacttctcctaccaacttctctctctcTttttttctcctcctcctcttcttcttggtggccgctcgccgccgccgacgccgacgccgccggcgggtctcgtcgtcggtggcattgaaatatggtta |
|||||||
| Protein seq | SLFFVSPVANFSYQLLSLFFSPPPLLLGGRSPPPTPTPPAGLVVGGIEIWL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 18706606 | 18708249 | + | OsLiXu_02g0017990.01 | OsLiXu_02g0017990.03,OsLiXu_02g0017990.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.214850 | 0.955100 | 1.500935 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0499000 | RBH | 8.281582 | 5.718417 | 3.311847 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29550 | RBH | 5.996253 | 4.491720 | 0.962198 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0499000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018010 | RBH | 0.816889 | 13.903348 | 8.479001 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018150 | RBH | 2.027596 | 9.588631 | 3.933627 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018060 | RBH | 2.666546 | 23.981377 | 12.568126 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017880 | RBH | 0.444330 | 0.465963 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017810 | RBH | 42.591091 | 21.769314 | 21.394749 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0291100 | RBH | 18.4695915 | 12.698364 | 11.0792705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017600 | RBH | 0.456055 | 0.807435 | 1.855860 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0311600 | RBH | 31.2706585 | 14.0464665 | 3.8953435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018110 | RBH | 2.181486 | 0.355811 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017670 | RBH | 1.540548 | 5.347378 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018240 | RBH | 32.224518 | 15.069327 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017730 | RBH | 1.585037 | 8.935254 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018180 | RBH | 0.849888 | 2.675263 | 2.773512 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017900 | RBH | 5.809231 | 23.836138 | 10.683086 |
