Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0028270 | OGI:01084630 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:29416557-29419691 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtgaaaatgacatgcgttatactagtagctataagtgacaaactagcatcctgtgtggtggactgtaagactgatcggacctgttcagcctagatcttacaagttgatcctatcatgatcatccgtgccaagggcggtgataaatactccctccgtcccaaaataagtgtagttttgcactatttacgttcaacgtttgaccgtccatcttatttaaaaattttttatgattagtatttttattgctattagatgataaaacatgaatagtactttatatgtgactaaatgtttttaattttttcacaaatttttcaaataaaacggacggtcaaacgttgaacgtgaatagtgcaaaactgcatcttttatgggacggaggtagtaccacaagaccacacctttcttaccagcaaACacaaatggcaccatccaagaATaccatctcttatgcttatcccctttgcttcatcttcatcctttccaccaccactctatctgtggctatttccacctcctactcttctcgttgctcctCcccgtcccctgcatccgactaccatactgactatgtcgacacccttgcactcctccgctccttccagatatccatcggctacttctctagcggaggcaatagcttattctctgctgatgatgactacgtcaatccccgctcgttctcctttgttccccatggtgttttccgcaccaaggacccaactatcatccacctaactgcgacccttgtactctctggccctcgtagcagcacttacatcggccatcgccaccatcgttactctatcacccaaaccatctcgtttatccttgatggttattattctttcacctccaatgatctttgcatggttggcttcggcactaactatgctgcagatggctctataaaactacatgaggattctgtccttcgcctacgggttcctcgaccttccaagctcaccaaccccttagttaccggtcacctcgagggcaccaactttgagaccatctcgcttgttgcttacgacgaaagcgacaactatgtgtatagtgagaatgccctctgcccaccattcatgttggagaatagtatgcttgaacaggctcaggcagtcaaagaaaacttcaattgtgaccagctcaagacacatcttagaaggttgtataagctggaatacatggttgatgactccttggcaccaagaggctacaatatttggtcgcacgccactagaatgtacatcaaccacgtgcactgaactgcgaatggagcagtgcgcgcttatgtggagttctacaacgacacaaaaatgttaccatacaagggtcgtttcatggttgtagaggaggcacttgttgctgatGggtattgggacccaacaacaggtcaactctgctttaatgcttgtccaattgtgcgctcggtgtctgggTtgtcccatacagattttgtggtgcaggactgtaagatcaagatgagcttcaggtttgtggccaacaacaggtcaactctgctttaatgcTtgtccaattgtgcgctcggtgtctgggttgtcccatacagattttgtggtgcAggactgtaagatcaagatgagcttcaGgtttgtggAtgtgtggacaatccgtgataggagtgtcattgctggaatgctttGgaactcaagccaagggattgttaacaactctcgagcaatccccggtataatatcagtgtcgggtatccaagagcactgggaaaatatctctcatgtgaagtACacttacactgtggttgatgaggcaaagaagcactacatcagttcgggtttgagcaacaagaagAaaaagatcaaggggtcatttcctggcaacggtacctactcttaccatgacttagagttccgtttcattgcgaaccatgttggatctggagatgCctatcctatgactattgggtcaatgatggtttattggattcgacctaagaatggatcatactccattagtcttcatgaacggcgaatctcagcagagggtatatatgatcgtaaGaggggtaccttgtgcatgatcggttgccgagagataaatagttcgAcagattgtctagttttgataactgtgctattttcttctcttgatgcaaagacgcaggggcatggagtgggagcaatcagtagcttgagagAaaagaatgaccgtcttttctttgagaagatcgatatcactttatacgggatgtacacagagcagctctttGAggcaatatcgaGgatggacatggaaagcatcatgctagtgctatcAacaacattgtcttGtgtcttcaccattttgcagattctccacaccaagaagaaccctgaggtgcccccagccacatcaatcaccatgctTAtcactctagccttGgggtacttaaCccctcttgtgctcaactttgaGgctttgttcttgagcaGaagaaagcaatatgttccattctttaggaacaaccgggttgagttgaacgaagtgatgctaagggttcctactttgatcgcctttgtgttacatctgcggcttcttcagctggtttGgtatggccgaaaaccagaccaccagagcaaagctgagacattttctattgccaagaggaaagcattgcaaatatgcttatcactttactttcttggaggaatcctagctgggatcatccatattataaatgttcacactagaagGgagagcccagtagttgttcgcatcagccaagagccGgctaccatatgggaggacctcgtgtcatatgcAggattgatactaGatggcttcctactccctcagattatcttcaatagattgtctGgctctagagttcaagcaatttcaccatggttttacattggaggcaccttgatccgtgccatgccccatgtctatgatttatccagggctcaaaactatataccgagcttgaggtcatcttatatatatgcaaactctcatgatgatctGttcagtgcagcatgggacgtcattattccattaggagcagctttgctagcattggtgttattcttgcaacaaaggcttggaggtgcatccttgatttcattgcaagggagcaggttGggctcctatgaaatggtctctactatataa
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| CDS seq | atgatatccatcggctacttctctagcggaggcaatagcttattctctgctgatgatgactacgtcaatccccgctcgttctcctttgttccccatggtgttttccgcaccaaggacccaactatcatccacctaactgcgacccttgtactctctggccctcgtagcagcacttacatcggccatcgccaccatcgttactctatcacccaaaccatctcgtttatccttgatggttattattctttcacctccaatgatctttgcatggttggcttcggcactaactatgctgcagatggctctataaaactacatgaggattctgtccttcgcctacgggttcctcgaccttccaagctcaccaaccccttagttaccggtcacctcgagggcaccaactttgagaccatctcgcttgttgcttacgacgaaagcgacaactatgtgtatagtgagaatgccctctgcccaccattcatgttggagaatagtatgcttgaacaggctcaggcagtcaaagaaaacttcaattgtgaccagctcaagacacatcttagaaggttgtataagctggaatacatggttgatgactccttggcaccaagaggctacaatatttggtcgcacgccactagaatgtacatcaaccacggtcgtttcatggttgtagaggaggcacttgttgctgatGggtattgggacccaacaacaggtcaactctgctttaatgcttgtccaattgtgcgctcggtgtctgggTtgtcccatacagattttgtggtgcaggactattttgtggtgcAggactgtaagatcaagatgagcttcaGgtttgtggAtgtgtggacaatccgtgataggagtgtcattgctggaatgctttGgaactcaagccaagggattgttaacaactctcgagcaatccccggtataatatcagtgtcgggtatccaagagcactgggaaaatatctctcatgtgaagtACacttacactgtggttgatgaggcaaagaagcactacatcagttcgggtttgagcaacaagaagAaaaagatcaaggggtcatttcctggcaacggtacctactcttaccatgacttagagttccgtttcattgcgaaccatgttggatctggagatgCctatcctatgactattgggtcaatgatgctggtttGgtatggccgaaaaccagaccaccagagcaaagctgagacattttctattgccaagaggaaagcattgcaaatatgcttatcactttactttcttggaggaatcctagctgggatcatccatattataaatgttcacactagaagGgagagcccagtagttgttcgcatcagccaagagccGgctaccatatgggaggacctcgtgtcatatgcAggattgatactaGatggcttcctactccctcagattatcttcaatagattgtctGgctctagagttcaagcaatttcaccatggttttacattggaggcaccttgatccgtgccatgccccatgtctatgatttatccagggctcaaaactatataccgagcttgaggtcatcttatatatatgcaaactctcatgatgatctGttcagtgcagcatgggacgtcattattccattaggagcagctttgctagcattggtgttattcttgcaacaaaggcttggaggtgcatccttgatttcattgcaagggagcaggttGggctcctatgaaatggtctctactatataa
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| Protein seq | MISIGYFSSGGNSLFSADDDYVNPRSFSFVPHGVFRTKDPTIIHLTATLVLSGPRSSTYIGHRHHRYSITQTISFILDGYYSFTSNDLCMVGFGTNYAADGSIKLHEDSVLRLRVPRPSKLTNPLVTGHLEGTNFETISLVAYDESDNYVYSENALCPPFMLENSMLEQAQAVKENFNCDQLKTHLRRLYKLEYMVDDSLAPRGYNIWSHATRMYINHGRFMVVEEALVADGYWDPTTGQLCFNACPIVRSVSGLSHTDFVVQDYFVVQDCKIKMSFRFVDVWTIRDRSVIAGMLWNSSQGIVNNSRAIPGIISVSGIQEHWENISHVKYTYTVVDEAKKHYISSGLSNKKKKIKGSFPGNGTYSYHDLEFRFIANHVGSGDAYPMTIGSMMLVWYGRKPDHQSKAETFSIAKRKALQICLSLYFLGGILAGIIHIINVHTRRESPVVVRISQEPATIWEDLVSYAGLILDGFLLPQIIFNRLSGSRVQAISPWFYIGGTLIRAMPHVYDLSRAQNYIPSLRSSYIYANSHDDLFSAAWDVIIPLGAALLALVLFLQQRLGGASLISLQGSRLGSYEMVSTI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0028270 | OsLiXu_01g0028270.01 | Chr01 | 29416557 | 29419691 | + | NAM | ||
| CDS seq | atgatatccatcggctacttctctagcggaggcaatagcttattctctgctgatgatgactacgtcaatccccgctcgttctcctttgttccccatggtgttttccgcaccaaggacccaactatcatccacctaactgcgacccttgtactctctggccctcgtagcagcacttacatcggccatcgccaccatcgttactctatcacccaaaccatctcgtttatccttgatggttattattctttcacctccaatgatctttgcatggttggcttcggcactaactatgctgcagatggctctataaaactacatgaggattctgtccttcgcctacgggttcctcgaccttccaagctcaccaaccccttagttaccggtcacctcgagggcaccaactttgagaccatctcgcttgttgcttacgacgaaagcgacaactatgtgtatagtgagaatgccctctgcccaccattcatgttggagaatagtatgcttgaacaggctcaggcagtcaaagaaaacttcaattgtgaccagctcaagacacatcttagaaggttgtataagctggaatacatggttgatgactccttggcaccaagaggctacaatatttggtcgcacgccactagaatgtacatcaaccacggtcgtttcatggttgtagaggaggcacttgttgctgatGggtattgggacccaacaacaggtcaactctgctttaatgcttgtccaattgtgcgctcggtgtctgggTtgtcccatacagattttgtggtgcaggactattttgtggtgcAggactgtaagatcaagatgagcttcaGgtttgtggAtgtgtggacaatccgtgataggagtgtcattgctggaatgctttGgaactcaagccaagggattgttaacaactctcgagcaatccccggtataatatcagtgtcgggtatccaagagcactgggaaaatatctctcatgtgaagtACacttacactgtggttgatgaggcaaagaagcactacatcagttcgggtttgagcaacaagaagAaaaagatcaaggggtcatttcctggcaacggtacctactcttaccatgacttagagttccgtttcattgcgaaccatgttggatctggagatgCctatcctatgactattgggtcaatgatgctggtttGgtatggccgaaaaccagaccaccagagcaaagctgagacattttctattgccaagaggaaagcattgcaaatatgcttatcactttactttcttggaggaatcctagctgggatcatccatattataaatgttcacactagaagGgagagcccagtagttgttcgcatcagccaagagccGgctaccatatgggaggacctcgtgtcatatgcAggattgatactaGatggcttcctactccctcagattatcttcaatagattgtctGgctctagagttcaagcaatttcaccatggttttacattggaggcaccttgatccgtgccatgccccatgtctatgatttatccagggctcaaaactatataccgagcttgaggtcatcttatatatatgcaaactctcatgatgatctGttcagtgcagcatgggacgtcattattccattaggagcagctttgctagcattggtgttattcttgcaacaaaggcttggaggtgcatccttgatttcattgcaagggagcaggttGggctcctatgaaatggtctctactatataa
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| Protein seq | MISIGYFSSGGNSLFSADDDYVNPRSFSFVPHGVFRTKDPTIIHLTATLVLSGPRSSTYIGHRHHRYSITQTISFILDGYYSFTSNDLCMVGFGTNYAADGSIKLHEDSVLRLRVPRPSKLTNPLVTGHLEGTNFETISLVAYDESDNYVYSENALCPPFMLENSMLEQAQAVKENFNCDQLKTHLRRLYKLEYMVDDSLAPRGYNIWSHATRMYINHGRFMVVEEALVADGYWDPTTGQLCFNACPIVRSVSGLSHTDFVVQDYFVVQDCKIKMSFRFVDVWTIRDRSVIAGMLWNSSQGIVNNSRAIPGIISVSGIQEHWENISHVKYTYTVVDEAKKHYISSGLSNKKKKIKGSFPGNGTYSYHDLEFRFIANHVGSGDAYPMTIGSMMLVWYGRKPDHQSKAETFSIAKRKALQICLSLYFLGGILAGIIHIINVHTRRESPVVVRISQEPATIWEDLVSYAGLILDGFLLPQIIFNRLSGSRVQAISPWFYIGGTLIRAMPHVYDLSRAQNYIPSLRSSYIYANSHDDLFSAAWDVIIPLGAALLALVLFLQQRLGGASLISLQGSRLGSYEMVSTI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.295584 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0678000 | RBH | 0.180646 | 0.277273 | 0.220761 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48620 | RBH | 0.117011 | 0.119149 | 0.054432 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0678000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029020 | RBH | 0.790318 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028600 | RBH | 0.113441 | 0.0 | 0.135474 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029000 | SBH | 3.418253 | 0.0 | 0.229546 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028220 | RBH | 0.153029 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027930 | RBH | 2.897933 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0464000 | RBH | 3.232344 | 1.150399 | 0.1768055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027670 | RBH | 0.432910 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0452800 | RBH | 2.842175 | 1.3488575 | 0.0055235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027960 | RBH | 0.055892 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027830 | RBH | 1.947519 | 1.091805 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028130 | RBH | 1.436052 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026230 | SBH | 0.774145 | 1.368321 | 1.126875 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028020 | RBH | 0.284809 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028510 | RBH | 1.175776 | 0.0 | 0.130505 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028180 | RBH | 2.933794 | 0.0 | 0.0 |
