Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0028040 | OGI:01084120 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:29179361-29183296 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aataaaaagcgataattgccacttgtcttccctgtagaggggtataccaacgtatacaacaaggaacacaagatattatgaaatgcctttcttttcttctcgcagcgtaaaatactccacagctttcaaatatctcatgttcatagagatccatgaaagagcagaaagcagcacacactaccgtgctatttacacactgcggcaccggcagtaacagctaacaggttacaagtaacaacgctttctattggtaaaaaaaagagacggcttaaacagatattcatgctattccaaaaaatatttccgatggtggtccgtatggacacggtttgtcatgctattccaaaaaaaaaattacttgccaattgtatggactcctgtcagatcacctcagatttgcatactgggcatgaaatcctcatccgaagccatttgtcaatgcactgtggaagagaaggcagatattcagagaagatgccaagctgaaatttaaggttcaaagcagttcaagtgtataactggagtgtttgcatgtactacctctttatgaaatttatgcaggcacggtaaacgccggaggtattcaccagcagcagggcaatccaggcatataggacagggttcatcagaacaactctctccctgataaaaaggagaatgcaagattagctctactaaaaagaaaaagcatatccatatcgagcaagaccgattcagacctcaactacagatagtggcaggttgtttatttgaatgtcagaagcacccctgtgatggttgttgtcatcaagtcttattaggctctcatagtcatcactgatcaacaaaaataacactaattagtcagaatacatatacatcagcatagtaacagcttcagtcaaagaagcaaaattttaggagagcaccatccagccatccctattgcaagacatatgggtcaagccacgttagtgttaacctaattgtactttcacattataaagcactaagaatgtaataccaagtgcatagcatatgatgatatgaatattttataccaaaaggcaggagtaagctcgcaactatgacaaatttattgcctggtggcgaaaatgtcatcagaaaagcattgttataaaaaagctaagtacttactcatcagattctgacataaattcctctccgaagtttccaaatgcttcttcgagtgaatccagtattgccatgcgctgcatatttttcaaaaagaaaaaatgtttgctgtaacacaagtgttccaatgtattgacccatcagaagaaaaaaggagttgcttcaatatcgtataaggggcattaaataaagtgttttgcttctataataaacctatctggattgataagatgaatgccaaaaacacataggagcacTtttggtgttaatgcctgtgcataatggaaaaacacaagggaatgataacatggcggaatgctaatcaactaggtaaaaaaagccccttgatactccaacatagccatatcatagattagagagtaatgaccaaccgtttctagatccatgttttcatctctgaagcaccctctagtcaattgggagataagcatctgagaataagcaaatgtgagtgcacaagtgaaggttgaagaaataaatttataaggattcacacattctgttgctctctgtcagggcggttgaagcttctttgcgaaCcccttctgcttggaattggagtcagcacattgatactgtgaactggtgagtgccggccaaatgaatacaagtgtgccattgaacggtcccTttggctctgagaagaacaatattacacctcTtaataaagaaatgattggatgaagcttcagataaataatggaagtaattaagacatgggatgccatagcccaataggccaccataagcacaagatagaaatacaagtaaagaatataagattacgaacaacagttgataatcaagtgtttttggtcttatgttttatcaagaacaacagtggataattaagtgcttttggtcttaagttttgctatctgaatttgttttacacaccattgctacgttttttatgcttgcagacagatatgattgtcatgcctttttatctcaatgtttaattagcaagaagtaattggcacttgcagctaatttacttgcaaggcgccaagtttctcaatgaaaataagcgtggtagctgtagttttcaataatgtcagacatggttatcacttattaggatcaacataatagtcataactgaaaccatggcattattcataaagatgaaaacaaaattgttgcaggccataggtgattttcacaacggatgcatcaagccacaatgacaacttacagagctagattggccctctctgacagcatttctagcgtgttccgcatcttcctcttgcaatgtccaggctagtgttgtatcaacctgccagattccaggaataagcgagtttttaaaaatgagaagaaaaattcaacattcacaagatggccaactgaagattgggtggggaggttaaaccactcgtgaccaggcaattggcatattctcaaagtaataagtccgtcatttcttaagttagtactgaataatcagaagaaaccacaatcatcacgtagagacaacAaaaccaactactcctataacaaacaaatgatttaaattggcaccaggatagcaagattgagaagtaaccatgagtaacaacctcttctaagttttgcgagcctggctgctccttgtttaactgctcctgaagcctgcgtgcaaactcctcatcggattcaatttgtctggttcttaactgattctcatcaggaagtgggtagttgagccccttgatcctcgatagccatgtggagctaccatcttccatggaaacatcaccagctccagtaacttcattagtggctacagagcttggtccatgcattggaacctcatcttctctcttgccattgtcccgcgaatgcaacagtttgtcgacagcaggatcagcgggcctcgcaccaagaatccccttccacttgtcatccggcgtgccggaaccactgtgaagcagcccgtgctgtccatgtccctcctgcaaccccttgctgtctgattcatcctgaggcgcggagattgatccgccatttcccccatctccaggcttgctttcgcctcccgctcccaatgtacagccacgggagccgatcaaaggatcaacaggcgccgacaccgctctctccatcatctccccctcgccgaccttctccttgcccttcttcacttcctggctcggcggcggatgcggatgcggatgccgatgcagcagcctcgccatcctctcccgctcgaggaagctctccgactcggttcttggatccgcctcgcaggcagcgcgcttccgatcgggcgagtgcacgcgcgcctcgtcctcttcctcggactcggagtcggacgagaccagatcaaccacctccattccctgcaaacaaacAaaaaaaaaagagaaaacattcaagcacagccatgacgaggggaacatgccagtgagatcagcagcatcatccaatccaataatcattttatttattattcgaggtacttaaaaccgaagtaaaatgagggatttgaattgacacgtacacccgcgacctcctctttcctCccctcctccccgcttttccctcgctcgcccgtgcacaccccacccctcgcgctgccgcgtcgccggccgccgacccgCccctgctcgccgcggcccaggtcgccgaccgcctctgctttattgcgccgtcggggtacgtgtcgctccttcgcgtctcgctcgcggaggaatctggggatgggggcggcgtgagagaggggttcctctccggtggaagccggggggagacgtggcagagagggaggaggaaaaatagaagggagcaacagaa
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| CDS seq | atggaggtggttgatctggtctcgtccgactccgagtccgaggaagaggacgaggcgcgcgtgcactcgcccgatcggaagcgcgctgcctgcgaggcggatccaagaaccgagtcggagagcttcctcgagcgggagaggatggcgaggctgctgcatcggcatccgcatccgcatccgccgccgagccaggaagtgaagaagggcaaggagaaggtcggcgagggggagatgatggagagagcggtgtcggcgcctgttgatcctttgatcggctcccgtggctgtacattgggagcgggaggcgaaagcaagcctggagatgggggaaatggcggatcaatctccgcgcctcaggatgaatcagacagcaaggggttgcaggagggacatggacagcacgggctgcttcacagtggttccggcacgccggatgacaagtggaaggggattcttggtgcgaggcccgctgatcctgctgtcgacaaactgttgcattcgcgggacaatggcaagagagaagatgaggttccaatgcatggaccaagctctgtagccactaatgaagttactggagctggtgatgtttccatggaagatggtagctccacatggctatcgaggatcaaggggctcaactacccacttcctgatgagaatcagttaagaaccagacaaattgaatccgatgaggagtttgcacgcaggcttcaggagcagttaaacaaggagcagccaggctcgcaaaacttagaagaggttgatacaacactagcctggacattgcaagaggaagatgcggaacacgctagaaatgctgtcagagagggccaatctagctctagccaaAgggaccgttcaatggcacacttgtattcatttggccggcactcaccagttcacagtatcaatgtgctgactccaattccaagcagaagggGttcgcaaagaagcttcaaccgccctgacagagagcaacagaatatgcttatctcccaattgactagagggtgcttcagagatgaaaacatggatctagaaacgcgcatggcaatactggattcactcgaagaagcatttggaaacttcggagaggaatttatgtcagaatctgatgatgatgactatgagagcctaataagacttgatgacaacaaccatcacaggggtgcttctgacattcaaataaacaacctgccactatctgtagttgagggagagagttgttctgatgaaccctgtcctatatgcctggattgccctgctgctggtgaatacctccggcgtttaccgtgcctgcataaatttcataaagagtgcattgacaaatggcttcggatgaggatttcatgcccagtatgcaaatctgaggtgatctga
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| Protein seq | MEVVDLVSSDSESEEEDEARVHSPDRKRAACEADPRTESESFLERERMARLLHRHPHPHPPPSQEVKKGKEKVGEGEMMERAVSAPVDPLIGSRGCTLGAGGESKPGDGGNGGSISAPQDESDSKGLQEGHGQHGLLHSGSGTPDDKWKGILGARPADPAVDKLLHSRDNGKREDEVPMHGPSSVATNEVTGAGDVSMEDGSSTWLSRIKGLNYPLPDENQLRTRQIESDEEFARRLQEQLNKEQPGSQNLEEVDTTLAWTLQEEDAEHARNAVREGQSSSSQRDRSMAHLYSFGRHSPVHSINVLTPIPSRRGSQRSFNRPDREQQNMLISQLTRGCFRDENMDLETRMAILDSLEEAFGNFGEEFMSESDDDDYESLIRLDDNNHHRGASDIQINNLPLSVVEGESCSDEPCPICLDCPAAGEYLRRLPCLHKFHKECIDKWLRMRISCPVCKSEVI |
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| Function | E3 ubiquitin-protein ligase RNF6 [UniProtKB/Swiss-Prot:Q9Y252] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0028040 | OsLiXu_01g0028040.01 | Chr01 | 29179361 | 29183296 | - | NAM | ||
| CDS seq | atggaggtggttgatctggtctcgtccgactccgagtccgaggaagaggacgaggcgcgcgtgcactcgcccgatcggaagcgcgctgcctgcgaggcggatccaagaaccgagtcggagagcttcctcgagcgggagaggatggcgaggctgctgcatcggcatccgcatccgcatccgccgccgagccaggaagtgaagaagggcaaggagaaggtcggcgagggggagatgatggagagagcggtgtcggcgcctgttgatcctttgatcggctcccgtggctgtacattgggagcgggaggcgaaagcaagcctggagatgggggaaatggcggatcaatctccgcgcctcaggatgaatcagacagcaaggggttgcaggagggacatggacagcacgggctgcttcacagtggttccggcacgccggatgacaagtggaaggggattcttggtgcgaggcccgctgatcctgctgtcgacaaactgttgcattcgcgggacaatggcaagagagaagatgaggttccaatgcatggaccaagctctgtagccactaatgaagttactggagctggtgatgtttccatggaagatggtagctccacatggctatcgaggatcaaggggctcaactacccacttcctgatgagaatcagttaagaaccagacaaattgaatccgatgaggagtttgcacgcaggcttcaggagcagttaaacaaggagcagccaggctcgcaaaacttagaagaggttgatacaacactagcctggacattgcaagaggaagatgcggaacacgctagaaatgctgtcagagagggccaatctagctctagccaaAgggaccgttcaatggcacacttgtattcatttggccggcactcaccagttcacagtatcaatgtgctgactccaattccaagcagaagggGttcgcaaagaagcttcaaccgccctgacagagagcaacagaatatgcttatctcccaattgactagagggtgcttcagagatgaaaacatggatctagaaacgcgcatggcaatactggattcactcgaagaagcatttggaaacttcggagaggaatttatgtcagaatctgatgatgatgactatgagagcctaataagacttgatgacaacaaccatcacaggggtgcttctgacattcaaataaacaacctgccactatctgtagttgaggtctga
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| Protein seq | MEVVDLVSSDSESEEEDEARVHSPDRKRAACEADPRTESESFLERERMARLLHRHPHPHPPPSQEVKKGKEKVGEGEMMERAVSAPVDPLIGSRGCTLGAGGESKPGDGGNGGSISAPQDESDSKGLQEGHGQHGLLHSGSGTPDDKWKGILGARPADPAVDKLLHSRDNGKREDEVPMHGPSSVATNEVTGAGDVSMEDGSSTWLSRIKGLNYPLPDENQLRTRQIESDEEFARRLQEQLNKEQPGSQNLEEVDTTLAWTLQEEDAEHARNAVREGQSSSSQRDRSMAHLYSFGRHSPVHSINVLTPIPSRRGSQRSFNRPDREQQNMLISQLTRGCFRDENMDLETRMAILDSLEEAFGNFGEEFMSESDDDDYESLIRLDDNNHHRGASDIQINNLPLSVVEV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0028040 | OsLiXu_01g0028040.02 | Chr01 | 29179361 | 29183296 | - | NAM | ||
| CDS seq | atggaggtggttgatctggtctcgtccgactccgagtccgaggaagaggacgaggcgcgcgtgcactcgcccgatcggaagcgcgctgcctgcgaggcggatccaagaaccgagtcggagagcttcctcgagcgggagaggatggcgaggctgctgcatcggcatccgcatccgcatccgccgccgagccaggaagtgaagaagggcaaggagaaggtcggcgagggggagatgatggagagagcggtgtcggcgcctgttgatcctttgatcggctcccgtggctgtacattgggagcgggaggcgaaagcaagcctggagatgggggaaatggcggatcaatctccgcgcctcaggatgaatcagacagcaaggggttgcaggagggacatggacagcacgggctgcttcacagtggttccggcacgccggatgacaagtggaaggggattcttggtgcgaggcccgctgatcctgctgtcgacaaactgttgcattcgcgggacaatggcaagagagaagatgaggttccaatgcatggaccaagctctgtagccactaatgaagttactggagctggtgatgtttccatggaagatggtagctccacatggctatcgaggatcaaggggctcaactacccacttcctgatgagaatcagttaagaaccagacaaattgaatccgatgaggagtttgcacgcaggcttcaggagcagttaaacaaggagcagccaggctcgcaaaacttagaagaggttgatacaacactagcctggacattgcaagaggaagatgcggaacacgctagaaatgctgtcagagagggccaatctagctctagccaaAgggaccgttcaatggcacacttgtattcatttggccggcactcaccagttcacagtatcaatgtgctgactccaattccaagcagaagggGttcgcaaagaagcttcaaccgccctgacagagagcaacagaatatgcttatctcccaattgactagagggtgcttcagagatgaaaacatggatctagaaacgcgcatggcaatactggattcactcgaagaagcatttggaaacttcggagaggaatttatgtcagaatctgatgatgatgactatgagagcctaataagacttgatgacaacaaccatcacaggggtgcttctgacattcaaataaacaacctgccactatctgtagttgagggagagagttgttctgatgaaccctgtcctatatgcctggattgccctgctgctggtgaatacctccggcgtttaccgtgcctgcataaatttcataaagagtgcattgacaaatggcttcggatgaggatttcatgcccagtatgcaaatctgaggtgatctga
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| Protein seq | MEVVDLVSSDSESEEEDEARVHSPDRKRAACEADPRTESESFLERERMARLLHRHPHPHPPPSQEVKKGKEKVGEGEMMERAVSAPVDPLIGSRGCTLGAGGESKPGDGGNGGSISAPQDESDSKGLQEGHGQHGLLHSGSGTPDDKWKGILGARPADPAVDKLLHSRDNGKREDEVPMHGPSSVATNEVTGAGDVSMEDGSSTWLSRIKGLNYPLPDENQLRTRQIESDEEFARRLQEQLNKEQPGSQNLEEVDTTLAWTLQEEDAEHARNAVREGQSSSSQRDRSMAHLYSFGRHSPVHSINVLTPIPSRRGSQRSFNRPDREQQNMLISQLTRGCFRDENMDLETRMAILDSLEEAFGNFGEEFMSESDDDDYESLIRLDDNNHHRGASDIQINNLPLSVVEGESCSDEPCPICLDCPAAGEYLRRLPCLHKFHKECIDKWLRMRISCPVCKSEVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 29179901 | 29180176 | - | OsLiXu_01g0028040.01 | OsLiXu_01g0028040.02,OsLiXu_01g0028040.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.259248 | 0.595784 | 0.861634 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0736600 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48310 | RBH | 0.594667 | 0.982938 | 0.854393 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0673900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028820 | RBH | 0.000000 | 3.117462 | 6.189814 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028350 | RBH | 0.168868 | 2.828974 | 2.636201 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028790 | RBH | 0.700102 | 0.000000 | 9.316807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027970 | RBH | 0.000000 | 0.353785 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027720 | RBH | 3.891775 | 5.023901 | 17.311544 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0460600 | RBH | 4.7750485 | 9.7442885 | 30.841895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027440 | RBH | 0.290869 | 0.330197 | 1.353609 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0449200 | RBH | 4.9341105 | 11.0687635 | 21.192516 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027740 | RBH | 0.180834 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027600 | RBH | 1.407959 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027920 | RBH | 4.433002 | 12.730798 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025690 | SBH | 0.845721 | 0.000000 | 1.304493 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027790 | RBH | 0.119319 | 4.097209 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028260 | RBH | 0.252434 | 1.137396 | 2.467566 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027930 | RBH | 0.338792 | 7.482052 | 6.032321 |
