Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0026640 | OGI:01080950 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:28013877-28017224 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccagtatcttctaaacaaagatgcaaacttaccacggttcactgatttatttcactacaggctacaggtacagaaaatttacgcgcatgtcacagattgcacacaatcggaagcaaaaacagcatatgacgaaacatagggacaagctagttagcttcacatttcacattgatcacagcgtcatttgtcctggctactttcttctccctcgtaatccatcaacttccagtggccatcggcgcccctcaccatgcccttgtccctctgcacgctccacgacggcgggacgtggtactcctccttgagcgcgtccacattcttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctgcgccccggcgacgccgtgcatgtagcactcgaggctgtgccacaccgcctggttccccggcgacttgaggtacggcgacctcctcgtgtcgacggggagctcgacgccgacgtccgcgtaccccatcggcgggtacttgggcacgacgtccggcgagttgcagacgcggaggaggcgaaggccggggagctcgtcgaagagctttctgaacccGgagtccccgacgcgcgggcaggcgaaggcgaccgccgtgacggggcaggcgccgtgctgattcaggccgttggagacgatgtcggcggcgttgagggtcgcgacggcggctccgaggctatggccgacgacggtgatgctggtctcctcgtccttgtacttgtccattagcctcttgatctcatccgaaatctggtcacaaatgcaacgtcaagatgtaaaactatacaaactgaccacgaataagtacaccggatgtccctcaacttaacagcgagaTtttttaagatcgcttaaccacaaggctaatgtatacctctaaacttacataaaccgtgtaatcaagtcctataacagtatataTaGATGgttttgctgatgtggcatcccagtcaacaatatgagactagatgtaaatgagaatgtgagatgaataaaaatgtaggtatgcatcctttttcttctcttttCtttcttctcttttcgttggcgcagagcatggtgtggatccgggcggcggcaagcggctggagcaagcaggcggagcagcggcctccgcgaggagtggaccggagcgggggcggcgagcgagcgagcggctggagcaggcatgcagagcggcggagagcggagccgtccgagtagagcgagggcggcggcgggcgagctcgtctcgcacgaggatgccgaggtcgacgtcaacgtcgtccgcgacggcgccgcctccgcctgcttcgggatggggcataagaggtcgatgaagacggCccgaggatgaggggacccggcggtgatgaggtggttctggtggagagcaccagggcgtcgggtggccgcctactagtctggaggtcggcaaaaaaggcggcgaccgggcatggaggccgtggagcggggccgtgacggattgagtggtgtggtggagtccaaggggaCctgacggcagccgagcatggtggggagctcatctgtcgcggggggggggggggggggggggggggggtgggtgggcgcatggaggcggcgagcagccggAgcaagcgggcaagcgcacgggcggccggcagagtggagcagagcggtggagggcgagcacgcggccgacggagcggcgacgagcggagcgtcgacggtggcgagtgagcgtccgcgagcgcgcggcgggcgaacgtgcggccggcggagcggagtgggtGgtggctgggccaagaagattgaagagaagagagaaaagaaaaaaaagagaagaaataagATatcggtgccccatattttttttcatctcacttgcatgttgactttttttctaattaggatgtcacgtcagcgaaactacatgtatatacatatatatactgccatatgaccttgaatgcacgatttgtataagTtttggtgtacatatttctggttttgtggttaaaggatcttAAAaaaaatatcgctgttaagttgagcgacctctggtgaacttatttcaactgactaaacgtaGgcccaTttagaatgtggattatattgttggcccatcttgttggcccagcttttcactcggtttcacatgaacatgcacgtccgctttcgggcattacgagtaacgtgtccggaacccatgcccgagacgtgcacggccgaaactcttgacgacagctcggccatgatgtgatcaacggtggatgtatcgaccaacaggcgtggtacgcgttggcgcacggataccagaaaaccaatcagaaaacggctaaaacaggtctttctctggatgaccggatcacatacccgtctgatcctttgcctagtaagcacacaccagtcaccacgcgagcgccgaaaaccggatgtaggcttgtcgctcgcgtgtggctggaaacgttaaccatagcagaggcgatcgcgtcgcgcggatcgcggaagctgtcgcaaccatgcagctagccatgcaaggccagaaagatctagctgactagctttggtccggagaaacaacaaatttaatgaccgaaacctaccagccacaggaaaagaaaaaaccttaactactccgacactccgtaactcggtacggtcatcacgcatgtgcgggcacaacaacgacgtgagtagagtataacaaacagcacggttaatcgtagaatgcagtaacgtgcattatgctgcgtacgtacgtacctgctccctggcgctgagcttgctgtacttggacgccgggtcgctcgccgtgtagatggacagccaccccctgtgcaccctcggcgccggcgaacggccaccggcgccgagcactccggcggcggacacgagcgtgaagtcgaggtcgttgagccactccatgggccggacggtgccgcgccacgcgaccaccacgtcgcgcctgcccagcgcggccaccccggcgtccgtcgccacggccacgtaccccatccagttcgactcccggttccgcaccatgaacggcgccggcacgccgccggcgcccgcggtggcgtagaagaaggccgtcacctcgtacagtcccgccagctgggtcgacgcctgcgccttctccaagaacctgtcgcggctgtaccggcacgcgccggcgtgcggcgaccacgcctcgcggatgaacgcgtcgttggtggcctgcgccagctcgccgtagccgatgacgctgcgccggaggtcggcgtcgagagggtcgaggaggcccttccagtggtcctcgccgtggagctccctccaccgctcagcgacggccctcggcgcagtggttgacat
More
|
||||||||||
| CDS seq | atgtcaaccactgcgccgagggccgtcgctgagcggtggagggagctccacggcgaggaccactggaagggcctcctcgaccctctcgacgccgacctccggcgcagcgtcatcggctacggcgagctggcgcaggccaccaacgacgcgttcatccgcgaggcgtggtcgccgcacgccggcgcgtgccggtacagccgcgacaggttcttggagaaggcgcaggcgtcgacccagctggcgggactgtacgaggtgacggccttcttctacgccaccgcgggcgccggcggcgtgccggcgccgttcatggtgcggaaccgggagtcgaactggatggggtacgtggccgtggcgacggacgccggggtggccgcgctgggcaggcgcgacgtggtggtcgcgtggcgcggcaccgtccggcccatggagtggctcaacgacctcgacttcacgctcgtgtccgccgccggagtgctcggcgccggtggccgttcgccggcgccgagggtgcacagggggtggctgtccatctacacggcgagcgacccggcgtccaagtacagcaagctcagcgccagggagcagatcaagaggctaatggacaagtacaaggacgaggagaccagcatcaccgtcgtcggccatagcctcggagccgccgtcgcgaccctcaacgccgccgacatcgtctccaacggcctgaatcagcacggcgcctgccccgtcacggcggtcgccttcgcctgcccgcgcgtcggggactcCgggttcagaaagctcttcgacgagctccccggccttcgcctcctccgcgtctgcaactcgccggacgtcgtgcccaagtacccgccgatggggtacgcggacgtcggcgtcgagctccccgtcgacacgaggaggtcgccgtacctcaagtcgccggggaaccaggcggtgtggcacagcctcgagtgctacatgcacggcgtcgccggggcgcagggcaagcgcggcgggttcaagctggaggtcgaccgggacgtggcgctggtgaacaagaatgtggacgcgctcaaggaggagtaccacgtcccgccgtcgtggagcgtgcagagggacaagggcatggtgaggggcgccgatggccactggaagttgatggattacgagggagaagaaagtagccaggacaaatga
More
|
||||||||||
| Protein seq | MSTTAPRAVAERWRELHGEDHWKGLLDPLDADLRRSVIGYGELAQATNDAFIREAWSPHAGACRYSRDRFLEKAQASTQLAGLYEVTAFFYATAGAGGVPAPFMVRNRESNWMGYVAVATDAGVAALGRRDVVVAWRGTVRPMEWLNDLDFTLVSAAGVLGAGGRSPAPRVHRGWLSIYTASDPASKYSKLSAREQIKRLMDKYKDEETSITVVGHSLGAAVATLNAADIVSNGLNQHGACPVTAVAFACPRVGDSGFRKLFDELPGLRLLRVCNSPDVVPKYPPMGYADVGVELPVDTRRSPYLKSPGNQAVWHSLECYMHGVAGAQGKRGGFKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHWKLMDYEGEESSQDK |
||||||||||
| Function | Phospholipase A1-II 4 [UniProtKB/Swiss-Prot:B9EYD3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0026640 | OsLiXu_01g0026640.01 | Chr01 | 28013877 | 28017224 | - | NAM | ||
| CDS seq | atgtcaaccactgcgccgagggccgtcgctgagcggtggagggagctccacggcgaggaccactggaagggcctcctcgaccctctcgacgccgacctccggcgcagcgtcatcggctacggcgagctggcgcaggccaccaacgacgcgttcatccgcgaggcgtggtcgccgcacgccggcgcgtgccggtacagccgcgacaggttcttggagaaggcgcaggcgtcgacccagctggcgggactgtacgaggtgacggccttcttctacgccaccgcgggcgccggcggcgtgccggcgccgttcatggtgcggaaccgggagtcgaactggatggggtacgtggccgtggcgacggacgccggggtggccgcgctgggcaggcgcgacgtggtggtcgcgtggcgcggcaccgtccggcccatggagtggctcaacgacctcgacttcacgctcgtgtccgccgccggagtgctcggcgccggtggccgttcgccggcgccgagggtgcacagggggtggctgtccatctacacggcgagcgacccggcgtccaagtacagcaagctcagcgccagggagcagatcaagaggctaatggacaagtacaaggacgaggagaccagcatcaccgtcgtcggccatagcctcggagccgccgtcgcgaccctcaacgccgccgacatcgtctccaacggcctgaatcagcacggcgcctgccccgtcacggcggtcgccttcgcctgcccgcgcgtcggggactcCgggttcagaaagctcttcgacgagctccccggccttcgcctcctccgcgtctgcaactcgccggacgtcgtgcccaagtacccgccgatggggtacgcggacgtcggcgtcgagctccccgtcgacacgaggaggtcgccgtacctcaagtcgccggggaaccaggcggtgtggcacagcctcgagtgctacatgcacggcgtcgccggggcgcagggcaagcgcggcgggttcaagctggaggtcgaccgggacgtggcgctggtgaacaagaatgtggacgcgctcaaggaggagtaccacgtcccgccgtcgtggagcgtgcagagggacaagggcatggtgaggggcgccgatggccactggaagttgatggattacgagggagaagaaagtagccaggacaaatga
More
|
|||||||
| Protein seq | MSTTAPRAVAERWRELHGEDHWKGLLDPLDADLRRSVIGYGELAQATNDAFIREAWSPHAGACRYSRDRFLEKAQASTQLAGLYEVTAFFYATAGAGGVPAPFMVRNRESNWMGYVAVATDAGVAALGRRDVVVAWRGTVRPMEWLNDLDFTLVSAAGVLGAGGRSPAPRVHRGWLSIYTASDPASKYSKLSAREQIKRLMDKYKDEETSITVVGHSLGAAVATLNAADIVSNGLNQHGACPVTAVAFACPRVGDSGFRKLFDELPGLRLLRVCNSPDVVPKYPPMGYADVGVELPVDTRRSPYLKSPGNQAVWHSLECYMHGVAGAQGKRGGFKLEVDRDVALVNKNVDALKEEYHVPPSWSVQRDKGMVRGADGHWKLMDYEGEESSQDK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.465307 | 0.217627 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0651800 | SBH | 0.0 | 0.0 | 1.514509 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46370 | RBH | 0.256585 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0652300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027480 | RBH | 0.0 | 26.035311 | 1.800637 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026960 | RBH | 0.0 | 2.033315 | 2.106993 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027420 | RBH | 0.0 | 16.136467 | 2.517482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026660 | RBH | 0.0 | 0.406267 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026410 | RBH | 1.398701 | 4.438726 | 2.428619 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0442100 | RBH | 0.5310855 | 4.953052 | 0.1133655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026090 | RBH | 0.0 | 0.540885 | 1.180916 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0431300 | RBH | 0.8145655 | 1.4938155 | 0.02594 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026340 | RBH | 0.0 | 0.348588 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027560 | RBH | 0.0 | 0.467977 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026470 | RBH | 0.000000 | 0.974364 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026850 | RBH | 0.000000 | 0.0 | 0.753038 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026620 | RBH | 0.0 | 0.000000 | 0.000000 |
