Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0025180 | OGI:01013090 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:26679876-26681015 | ||||||||
| Gene Symbol | CYP72A17, OsCYP72A17 | ||||||||||
| DNA seq | ctccgtcccgTttgcttcaacaacacaTttgctttgctcggtacatgcagagagaaaaagaagcaatgggcatcggcatcggcatcggcaccggcAccggcgcggcgctaccattcggcgaggcctcgccgtggagCctgctcggcggcgcggtggccgcgctgctgctggtcTgggccgcgcagatgctggagtgggcctggctggcccCgcggcggaTggaacgggccctcagggcccagggcctgaggggcacccagtaccgcttcctccatggcgaCctcaccgaggacctgcggctcgtcacggcggcccgctccaagcccgtgcccatggaccggccccacgacttcatcccgcgcgtcgcgcctctgcttcaccgtgccttggaggaacacggtactgtactcgctctacttctgcaatatttgttttcttttgttttgtttttcggcgaacacatccaagatttgattgTtgttatgcaacTttaagttcatcgtacagttgatctagaaatgccactatttgatcatcaattatcttgTttttttcagtgtctttgtaccatgttctgatctctgtgcgcatgaaaatgcaggtagggtttcTtttacatggttcgggccaatgccaagggttacaatcactgatccggacttggtccgtgaagttctatcgaacaaatttggtcacTttgagaagacaaagctggccactcggctttctaagttactcgttggtgggcttgtgatccttcatggtgaaaaatgggtcaaacataggaggattatgaatccagcctttcatgcagaaaagctaaaggtattaTTactaggatttactgaaagaattcgtgaatatgagacctgactactgtatttagtattcaggatttcatgtgtaagaattatcatttagtaagacgatcgcttagcctagctatttgatcagaagttaaattaatctgatgaatgcctgcattctttgcagtcactaaacaggtcgaactaaacatattagaactggagatcaatttggttacacttactttcctggtatttttcccctttccctgacttatatattcccttggaactaattgcagcggatgttgccagcattctccgcatcttgtag
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| CDS seq | atgcagagagaaaaagaagcaatgggcatcggcatcggcatcggcaccggcAccggcgcggcgctaccattcggcgaggcctcgccgtggagCctgctcggcggcgcggtggccgcgctgctgctggtcTgggccgcgcagatgctggagtgggcctggctggcccCgcggcggaTggaacgggccctcagggcccagggcctgaggggcacccagtaccgcttcctccatggcgaCctcaccgaggacctgcggctcgtcacggcggcccgctccaagcccgtgcccatggaccggccccacgacttcatcccgcgcgtcgcgcctctgcttcaccgtgccttggaggaacacgcggatgttgccagcattctccgcatcttgtag |
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| Protein seq | MQREKEAMGIGIGIGTGTGAALPFGEASPWSLLGGAVAALLLVWAAQMLEWAWLAPRRMERALRAQGLRGTQYRFLHGDLTEDLRLVTAARSKPVPMDRPHDFIPRVAPLLHRALEEHADVASILRIL |
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| Function | Secologanin synthase [UniProtKB/Swiss-Prot:Q05047] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0025180 | OsLiXu_01g0025180.01 | Chr01 | 26679876 | 26681015 | + | NAM | ||
| CDS seq | atgcagagagaaaaagaagcaatgggcatcggcatcggcatcggcaccggcAccggcgcggcgctaccattcggcgaggcctcgccgtggagCctgctcggcggcgcggtggccgcgctgctgctggtcTgggccgcgcagatgctggagtgggcctggctggcccCgcggcggaTggaacgggccctcagggcccagggcctgaggggcacccagtaccgcttcctccatggcgaCctcaccgaggacctgcggctcgtcacggcggcccgctccaagcccgtgcccatggaccggccccacgacttcatcccgcgcgtcgcgcctctgcttcaccgtgccttggaggaacacgcggatgttgccagcattctccgcatcttgtag
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| Protein seq | MQREKEAMGIGIGIGTGTGAALPFGEASPWSLLGGAVAALLLVWAAQMLEWAWLAPRRMERALRAQGLRGTQYRFLHGDLTEDLRLVTAARSKPVPMDRPHDFIPRVAPLLHRALEEHADVASILRIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.553892 | 1.066489 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0627400 | RBH | 2.295184 | 1.390115 | 1.377823 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43700 | RBH | 1.705036 | 0.897580 | 0.346982 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0627400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025970 | RBH | 0.160789 | 13.064224 | 2.852930 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025610 | RBH | 0.243434 | 0.567797 | 2.923230 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025950 | RBH | 0.000000 | 8.619579 | 2.479446 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025250 | RBH | 0.000000 | 0.141043 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025000 | RBH | 10.386683 | 12.951579 | 6.181221 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0421000 | SBH | 0.892174 | 1.455999 | 0.3114915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024670 | RBH | 0.081862 | 0.447179 | 0.596240 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0409600 | RBH | 1.238406 | 7.1368185 | 0.089831 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024950 | RBH | 0.342327 | 0.442177 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024940 | RBH | 0.864597 | 2.947353 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025180 | RBH | 6.671305 | 19.920635 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025060 | RBH | 0.0 | 0.676423 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025320 | RBH | 0.229186 | 0.416659 | 0.843846 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025070 | RBH | 0.221251 | 3.072450 | 2.554286 |
