Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0019750 | OGI:01055560 | 5/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:21135571-21139453 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaagccttttgtagtcagctctctagacTtgcttatgcttctgcagtgagcaCccagcaataggttagctacatttttcttgactgaatggttcggtacgaatacatgtaatcttaacagtaggattaatagtcatgccttatccttggatattaattaaagttgttccttttcgtttatggtaagatcaagttcaTttttactatatatgaagtgcggtacttatctaaatgctgttgtgattttaaaggcacaaaaaatgtagttgcaaggttttTAaTtattttcctactgtttatgtatatttatccttttagtaacctaaaaaaactaattgctactcttcttctgatagtatgttgctttgtttgtgtgTttttaaggtaaatctgctctcttggttctctgaattaaaaggacatacaactatagcatgatgatcttgcaggaaattatcatgtcttttcagcaaggtactataaccaaaagcacaagtaaattctgatgatggTttttttattgtgcctaaattgatcgtttactagaagttctttgctttagattgctctatatgaatcgagttgtcgaaaaaggtgccatttagtccacgggcttcacgaaaatcagtgtttcaaagaaacaaaccttgaaacattccatGgggttctcaggttagtttaatcaaactacatccatgggatttcgtgattcattatgtataaatttcatgaatttagatgtggtcgcagatcgcggatggcggcggccaccaggcggatgtggtcaagggaggactggcagcgctgagcaacgacgtctaggaatagcatctcaggccagtcctcttgctccctcatctcgctccttacatatttctggattattcagttgaggagaaggaattcacaaaggaactgctcctgCAcccactccccaatcgcaacgcgctggcccacttccactcctctgcgcatccctctgctgccaacggacgctagcaacatgtcaaaccccaaggccatcccccagctggtatgtgccccgtgttcccctttccccagtacacaggtcttgcgactgctactgcccttagtaagttaggattcgacggttagtgttgtttcgaattgggcttgtcttgtgtggattggccgtgcggagctgtagaatcaggtgatactaaatgggaatagagcaattagcttatttttatcagcaggaacaatgagtgtagcaactgcttcatagcttttttcagttcattcgctttagttgggacttgggactggatgaggattatcactgtttttttttttttgcattatgttgactatgtcagtcttagtttttttttgggacttgggactggatgaggattttcactttagtgtcctctttttaagtaatctactgtgaaatcagttgctggatgtttcagtaaccatgacgtgtgggttagtaaatatgtgcggattattaccgggtagtgcatttacccacataCtgattcagaggaacaaaaTatattgccattgattatttattctgctgtgaggtaaaggaggatttaggttgcaattaatAaaattgtactactgcatttgtccctaagaagtcacaactctttctggtaaaaaatttagcatgctgttttacaaCttctagatttaTttgtttttcagtgcaagtcactgactttacggtattggagttcgagtagaagatcagctgctccgtcatcgacgatggcctgatccacagatgaattttggtgctgatacttccagggaggtaaattattgttctatttggcacatgctggtggggtgcgatgtcatctgtgccaaatGgacctaaaaatattgttagctagcCtgactgtcatcagccaatgcttttcagttgggtgctcgaagttcagaaaaagctgCtaggtggatcaggacaatggaatctgccttaaaggttggagTttttcttatttattttatttcacacaatcattatgttcaaaaaagcactaacatgatgtctgtcatgtgagcagcccccaagaaaggatgaacttgttagctgttcacatacaagatggcaagcttttaggtaagctgctatgcagatcaatctttattttgtcAattacttagcaatggactggagattcatgcactgtttattTAatgagaaatgctcttactgttagactcatccttttcttttctttttcagtttataaagtttttcctcTttttgtatctttttcattgaaaacagtatgtagattctaaaggctactgtcaaatgtttggcacacatttcataaaatttccAaattatctaccattgtgctagccctcttttttgaaaggCctcctcttgttagtgctggaaacaatcagtagttatggctgtatgaaatgccatgagatcatttactttagattgaatcattgaactaaatagtttttactgtttttagatgggatgcagcacatgctcgtgctttcaagttacaagagaacaatgatgCctatatgtaaTtttatacatcaCcttttcttttcttttcTttttttgtaaaaatataattaatcatatgactgatgctttgttctgagtttgactgctagcctctacagtcctatgctccatcctctgttgtacatatttggatagaagTttcattttcttcatcacttgggttgatgtttaattataataaaaaagtacccaactgtccttgttctattggctaatctgtggctatatctttgcaggctaagccgctgcagtaaccgcatgcactcAataggtaactaTggtcttataatgtactccctctctagaataaacaaaattctagaaatgttatagttaagTttttctaatcattttcacataaaataatcaacatatgaatattgaaagtgatagtaaaagtttcttcttggaggctgtaaaatggcaaagttgagtaaatattcttaaattaagggagcaagacgaaattatagtactacttttagtgattcaattaactatctttatttctttaacatgtcaaacaataaaacctgtgtctctttactgtcattgttttccttatttttactgttctgtgcaaaatattctaccaggttggactgtattttcttctgtccataacgatcctatggcatctgatgttattgcaccttctccatggacaataTttgactgtaaaaatggtaagtataaaaaaaatctcaTttctttacatcactagattttgcgctgaatccgacttacatttaggattccgTttgtttactgaggcaaaagatggtggttcagaggggaaggtaattcttgtatgaaacaaaggttgcatatccttcttatgacgattctagcaaggtaaggttgattcTtgcTtgtgtgccttcatttggttaattacatagcagagcTtgccctttcatgttcatgagctggttctatttattgccaattgacttctctccatattagcttgccaattgatttggttaatcttgacacctccactatattagctggataatacatgcacttgggtggaaggattcatgtggtctcaattgattatttaacttgaaattggtaccttggattaatctcagtggattaatctttgcgttaagagttttttttttgttgatgatgagagaggaaatagggtgtccatgcttcatgattactggttatgtatgcttccttcattctttttcatgctaatgtacgTttccttgtatgatcaaggtcggtattgccatgggtgccttggagcttaatcatttgcctgattctcagcatgcttgtctgaaaagcagattgacctgagtttgtgtggtaagtggaggtg
More
|
||||||||||
| CDS seq | atgtcaaaccccaaggccatcccccagctgatgaattttggtgctgatacttccagggagttgggtgctcgaagttcagaaaaagctgCtaggtggatcaggacaatggaatctgccttaaagcccccaagaaaggatgaacttgttagctgttcacatacaagatggcaagcttttaggctaagccgctgcagtaaccgcatgcactcAataggttggactgtattttcttctgtccataacgatcctatggcatctgatgttattgcaccttctccatggacaataTttgactgtaaaaatggcaaaagatggtggttcagaggggaaggtaattcttgtatgaaacaaaggttgcatatccttcttatgacgattctagcaaggtcggtattgccatgggtgccttggagcttaatcatttgcctgattctcagcatgcttgtctga
More
|
||||||||||
| Protein seq | MSNPKAIPQLMNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGKRWWFRGEGNSCMKQRLHILLMTILARSVLPWVPWSLIICLILSMLV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0019750 | OsLiXu_01g0019750.01 | Chr01 | 21135571 | 21139453 | + | NAM | ||
| CDS seq | atgtcaaaccccaaggccatcccccagctgatgaattttggtgctgatacttccagggagttgggtgctcgaagttcagaaaaagctgCtaggtggatcaggacaatggaatctgccttaaagcccccaagaaaggatgaacttgttagctgttcacatacaagatggcaagcttttaggctaagccgctgcagtaaccgcatgcactcAataggttggactgtattttcttctgtccataacgatcctatggcatctgatgttattgcaccttctccatggacaataTttgactgtaaaaatggattccgTttgtttactgaggcaaaagatggtggttcagaggggaaggtcggtattgccatgggtgccttggagcttaatcatttgcctgattctcagcatgcttgtctgaaaagcagattgacctga
More
|
|||||||
| Protein seq | MSNPKAIPQLMNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGFRLFTEAKDGGSEGKVGIAMGALELNHLPDSQHACLKSRLT |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0019750 | OsLiXu_01g0019750.02 | Chr01 | 21135571 | 21139453 | + | NAM | ||
| CDS seq | atgtcaaaccccaaggccatcccccagctgatgaattttggtgctgatacttccagggagttgggtgctcgaagttcagaaaaagctgCtaggtggatcaggacaatggaatctgccttaaagcccccaagaaaggatgaacttgttagctgttcacatacaagatggcaagcttttaggctaagccgctgcagtaaccgcatgcactcAataggttggactgtattttcttctgtccataacgatcctatggcatctgatgttattgcaccttctccatggacaataTttgactgtaaaaatggcaaaagatggtggttcagaggggaaggtaattcttgtatgaaacaaaggttgcatatccttcttatgacgattctagcaaggtcggtattgccatgggtgccttggagcttaatcatttgcctgattctcagcatgcttgtctga
More
|
|||||||
| Protein seq | MSNPKAIPQLMNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGKRWWFRGEGNSCMKQRLHILLMTILARSVLPWVPWSLIICLILSMLV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 21138797 | 21138885 | + | OsLiXu_01g0019750.01 | OsLiXu_01g0019750.02,OsLiXu_01g0019750.01 | All |
| A5 | Chr01 | 21138911 | 21139351 | + | OsLiXu_01g0019750.02 | OsLiXu_01g0019750.02,OsLiXu_01g0019750.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.372653 | 1.146334 | 2.895615 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0540800 | RBH | 2.616918 | 2.163839 | 3.598413 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0540800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020520 | RBH | 1.284327 | 7.302982 | 17.472364 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020470 | SBH | 1.836420 | 1.150985 | 22.459005 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019840 | RBH | 0.555232 | 0.128057 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019650 | RBH | 0.452776 | 6.023985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
