Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0003730 | OGI:01008950 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:2878410-2879191 | ||||||||
| Gene Symbol | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, H2B | ||||||||||
| DNA seq | acgatgcaaacatcaacgatgtaatcaattctacaaaacaaaaaatcaattggcaaccagagatatgttcacatgacataaaaagcattactattccagatcagtgagttccccaaaagaagccccgcacaattcttcatttgcaatcatcatttccacttaaactaccacataaacagatcaatctactgctactactactactaacaaactagaggaaggcatgcagcctaagcggaagtaaacttggtgacggccttcgtgccctcggagacggcgtgcttggcgagctcgccggggaggacgaggcggacggaggtctgagtctcccgggaggtgatggtgggcttcttgttgtagcgggcgagcttggcggactccccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtgaacctgcttgagcaccttgaagatgtagatcttgtaggtctcgacgctcttcttccccttcttccgccccgccttcttcccctcgccgctgcccttctcgcccttgccggcggggagacgcttctccgccttgggcttcttccccgcgggggccttctcggccttctctgccgcgggctcctcctccgcgggcttcttcgcggccggcttcttctccgccttgggcgccatggatgcttctctcttcttctcggggaggggaagcgggtccgtgggttttgctttggagcggtgtgtgctgatgtgttgcgagattgcggt
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| CDS seq | atggcgcccaaggcggagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcagagaaggccgagaaggcccccgcggggaagaagcccaaggcggagaagcgtctccccgccggcaagggcgagaagggcagcggcgaggggaagaaggcggggcggaagaaggggaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggttcaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggggagtccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgggagactcagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcacgaaggccgtcaccaagtttacttccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRETQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Function | Histone H2B.7 [UniProtKB/Swiss-Prot:Q7GBK0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0003730 | OsLiXu_01g0003730.01 | Chr01 | 2878410 | 2879191 | - | NAM | ||
| CDS seq | atggcgcccaaggcggagaagaagccggccgcgaagaagcccgcggaggaggagcccgcggcagagaaggccgagaaggcccccgcggggaagaagcccaaggcggagaagcgtctccccgccggcaagggcgagaagggcagcggcgaggggaagaaggcggggcggaagaaggggaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggttcaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggggagtccgccaagctcgcccgctacaacaagaagcccaccatcacctcccgggagactcagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcacgaaggccgtcaccaagtttacttccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRETQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.942841 | 3.337081 | 2.213253 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152900 | RBH | 5.480196 | 4.730141 | 10.611327 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05630 | SBH | 2.710991 | 2.539652 | 1.498682 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003900 | RBH | 1.711054 | 36.004597 | 4.624758 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003650 | RBH | 0.819294 | 9.238479 | 4.326774 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003900 | RBH | 5.261574 | 38.689201 | 10.404036 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003490 | RBH | 0.637753 | 1.506109 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003720 | RBH | 13.450508 | 35.642975 | 12.884150 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0048800 | RBH | 42.2878915 | 34.408743 | 36.9072075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003680 | RBH | 0.359241 | 2.323968 | 2.345036 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0050000 | RBH | 40.879037 | 17.584215 | 122.2568895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003500 | RBH | 0.241118 | 1.128809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003640 | SBH | 1.978133 | 131.230591 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003790 | SBH | 11.343522 | 166.534302 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0004980 | SBH | 0.646498 | 0.0 | 3.877562 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003690 | SBH | 1.756623 | 55.736813 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003740 | RBH | 0.519781 | 4.854779 | 3.090059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003600 | RBH | 5.658762 | 48.006256 | 11.027705 |
