Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0001240 | OGI:01002250 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:877732-879735 | ||||||||
| Gene Symbol | RLCK5, OsRLCK5, - | ||||||||||
| DNA seq | tcacctgtttcttgtcatgtatgcctggcttgaattctccgcattcggatcagcattccttcttcctccggccatctccaatagtagcaTtccgaagctgtaaacatcggacttgcttgatatggcaccaaaaccccgagagatcatctcaggagctatgtatcccactgttcctcgtgctgcgctcactgggacaaaactcttgtcccttgggtacagctttgcaaggccaaaatcggcaacttttgggacaaagttgttgtcaagaaggatgttgtgcggtttgatgtcaaagtgtagaatttgcatatcacacccatgatgcaggtagttgatccctctggcaatgcccaatgcaatttcatttagcttatcccaggagaaactcttttcagacgagaagatgtacttgtcaagagaaccctgaggcatatactcgtacacaagcgctcttctCatttcttcagagcagaacccCacgagtcgcaccacattgacatggtggatcctaccaatggtggagacctcgctgatgaactcttcccctttgcaatttgcgtcacccttcagcatcttaatggcaactcggacatcaccagggagtagcacacctttgtagacggagccatatcctccttggccaagcttgtctctgaatgacttgtgatggcaataatgtcggtgtaggagtatctcgttggggtcagcatttgttgcaattgcagaaacttctctacttcatcaactctcatttattttccagtacatgtaggcaacggaggtccacatcagcagcatcaccaggacgaacctgcatgctacaccataaacatgttcatccctgctgtagagaccaagtgtatgaacaaatagagcatgacgaactacaatacagcgaaaaaggaaaatgtaactgaaatttgatatgtgtgattgtcacgtaccagaaatgacccttaaaatccagaaagtttgtggcactaacatcaggagcacaacaaaagggtgtggaagttgagttgcatggcggccgcatatcgagaagtaagaatgatattagtaacaatgacgaagatccgatatactgtcggttctccattactgtcgctgcaagaccacgatgtcatgcatgagccattgtacagcaaagcaaatttccaagataatgttatttggcattggtaaatttcactatcaagaatgtacaaggaagacgggccaagtgttcagttttaagtcccaaataaattgactcacctgatcaagccccttaggcagtcgatgaatcccccagacctgaaaggaaaacgaacagcAaatccttcactcatggatctgacaacatcAtcataatttacatcctccagtgtcgcagccgcagtagcagttcgccaattctagaccacccagagctaaaggagtcattgccaggtatccacaggaaggctcaaggttctcagctaaataagatcccagaccagttagcacatagacgaaagaagagttgccgctccggcaagccacaggcctgtacatgacattgctgctattcatttcctgcgagcatttcacaaaggtagcgaaccaatccacatcaggggacaactggacttggacacggcggtgtgaatcttctccaagcctgtagttttcattataaggagtctgactccaccgaggaagagggcagttgttagctgaatccaagcttgcatcgaccacccagaagtactgatcactgtagttgatgtcagttaccaagtatgttgccttgtcgatctgaattgtagcattgctgtctgcacaagtcagctcatatgatggaacaccacattcagcggggtcgccttgacgacggaatgggaaatgcacatagctaagacgtccgcaggagaaagatgggcacttgcctctcccctgaacctgatctggtacaacaagtgcaagcacagagaaggcagccatggcctgcagggcagcagaacgacgaaacgcaccagccat
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| CDS seq | atggctggtgcgtttcgtcgttctgctgccctgcaggccatggctgccttctctgtgcttgcacttgttgtaccagatcaggttcaggggagaggcaagtgcccatctttctcctgcggacgtcttagctatgtgcatttcccattccgtcgtcaaggcgaccccgctgaatgtggtgttccatcatatgagctgacttgtgcagacagcaatgctacaattcagatcgacaaggcaacatacttggtaactgacatcaactacagtgatcagtacttctgggtggtcgatgcaagcttggattcagctaacaactgccctcttcctcggtggagtcagactccttataatgaaaactacaggcttggagaagattcacaccgccgtgtccaagtccagttgtcccctgatgtggattggttcgctacctttgtgaaatgctcgcaggaaatgaatagcagcaatgtcatgtacaggcctgtggcttgccggagcggcaactcttctttcgtctatgtgctaactggtctgggatcttatttagctgagaaccttgagccttcctgtggatacctggcaatgactcctttagctctgggtggtctagaattggcgaactgctactgcggctgcgacactggaggatttcgtcatgctctatttgttcatacacttggtctctacagcagggatgaacatgtttatggtgtagcatgcagagaagtttctgcaattgcaacaaatgctgaccccaacgagatactcctacaccgacattattgccatcacaagtcattcagagacaagcttggccaaggaggatatggctccgtctacaaaggtgtgctactccctggtgatgtccgagttgccattaagatgctgaagggtgacgcaaattgcaaaggggaagagttcatcagcgaggtctccaccattggtaggatccaccatgtcaatgtggtgcgactcgtGgggttctgctctgaagaaatGagaagagcgcttgtgtacgagtatatgcctcagggttctcttgacaagtacatcttctcgtctgaaaagagtttctcctgggataagctaaatgaaattgcattgggcattgccagagggatcaactacctgcatcatgggtgtgatatgcaaattctacactttgacatcaaaccgcacaacatccttcttgacaacaactttgtcccaaaagttgccgattttggccttgcaaagctgtacccaagggacaagagttttgtcccagtgagcgcagcacgaggaacagtgggatacatagctcctgagatgatctctcggggttttggtgccatatcaagcaagtccgatgtttacagcttcggaAtgctactattggagatggccggaggaagaaggaatgctgatccgaatgcggagaattcaagccaggcatacatgacaagaaacaggtga
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| Protein seq | MAGAFRRSAALQAMAAFSVLALVVPDQVQGRGKCPSFSCGRLSYVHFPFRRQGDPAECGVPSYELTCADSNATIQIDKATYLVTDINYSDQYFWVVDASLDSANNCPLPRWSQTPYNENYRLGEDSHRRVQVQLSPDVDWFATFVKCSQEMNSSNVMYRPVACRSGNSSFVYVLTGLGSYLAENLEPSCGYLAMTPLALGGLELANCYCGCDTGGFRHALFVHTLGLYSRDEHVYGVACREVSAIATNADPNEILLHRHYCHHKSFRDKLGQGGYGSVYKGVLLPGDVRVAIKMLKGDANCKGEEFISEVSTIGRIHHVNVVRLVGFCSEEMRRALVYEYMPQGSLDKYIFSSEKSFSWDKLNEIALGIARGINYLHHGCDMQILHFDIKPHNILLDNNFVPKVADFGLAKLYPRDKSFVPVSAARGTVGYIAPEMISRGFGAISSKSDVYSFGMLLLEMAGGRRNADPNAENSSQAYMTRNR |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0001240 | OsLiXu_01g0001240.01 | Chr01 | 877732 | 879735 | - | NAM | ||
| CDS seq | atggctggtgcgtttcgtcgttctgctgccctgcaggccatggctgccttctctgtgcttgcacttgttgtaccagatcaggttcaggggagaggcaagtgcccatctttctcctgcggacgtcttagctatgtgcatttcccattccgtcgtcaaggcgaccccgctgaatgtggtgttccatcatatgagctgacttgtgcagacagcaatgctacaattcagatcgacaaggcaacatacttggtaactgacatcaactacagtgatcagtacttctgggtggtcgatgcaagcttggattcagctaacaactgccctcttcctcggtggagtcagactccttataatgaaaactacaggcttggagaagattcacaccgccgtgtccaagtccagttgtcccctgatgtggattggttcgctacctttgtgaaatgctcgcaggaaatgaatagcagcaatgtcatgtacaggcctgtggcttgccggagcggcaactcttctttcgtctatgtgctaactggtctgggatcttatttagctgagaaccttgagccttcctgtggatacctggcaatgactcctttagctctgggtggtctagaattggcgaactgctactgcggctgcgacactggaggatttcgtcatgctctatttgttcatacacttggtctctacagcagggatgaacatgtttatggtgtagcatgcagagaagtttctgcaattgcaacaaatgctgaccccaacgagatactcctacaccgacattattgccatcacaagtcattcagagacaagcttggccaaggaggatatggctccgtctacaaaggtgtgctactccctggtgatgtccgagttgccattaagatgctgaagggtgacgcaaattgcaaaggggaagagttcatcagcgaggtctccaccattggtaggatccaccatgtcaatgtggtgcgactcgtGgggttctgctctgaagaaatGagaagagcgcttgtgtacgagtatatgcctcagggttctcttgacaagtacatcttctcgtctgaaaagagtttctcctgggataagctaaatgaaattgcattgggcattgccagagggatcaactacctgcatcatgggtgtgatatgcaaattctacactttgacatcaaaccgcacaacatccttcttgacaacaactttgtcccaaaagttgccgattttggccttgcaaagctgtacccaagggacaagagttttgtcccagtgagcgcagcacgaggaacagtgggatacatagctcctgagatgatctctcggggttttggtgccatatcaagcaagtccgatgtttacagcttcggaAtgctactattggagatggccggaggaagaaggaatgctgatccgaatgcggagaattcaagccaggcatacatgacaagaaacaggtga
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| Protein seq | MAGAFRRSAALQAMAAFSVLALVVPDQVQGRGKCPSFSCGRLSYVHFPFRRQGDPAECGVPSYELTCADSNATIQIDKATYLVTDINYSDQYFWVVDASLDSANNCPLPRWSQTPYNENYRLGEDSHRRVQVQLSPDVDWFATFVKCSQEMNSSNVMYRPVACRSGNSSFVYVLTGLGSYLAENLEPSCGYLAMTPLALGGLELANCYCGCDTGGFRHALFVHTLGLYSRDEHVYGVACREVSAIATNADPNEILLHRHYCHHKSFRDKLGQGGYGSVYKGVLLPGDVRVAIKMLKGDANCKGEEFISEVSTIGRIHHVNVVRLVGFCSEEMRRALVYEYMPQGSLDKYIFSSEKSFSWDKLNEIALGIARGINYLHHGCDMQILHFDIKPHNILLDNNFVPKVADFGLAKLYPRDKSFVPVSAARGTVGYIAPEMISRGFGAISSKSDVYSFGMLLLEMAGGRRNADPNAENSSQAYMTRNR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0116400 | SBH | 1.395107 | 1.867418 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02700 | SBH | 0.909079 | 1.319252 | 0.129904 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0116400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001230 | RBH | 0.253715 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001070 | SBH | 0.160955 | 0.171025 | 0.792215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001230 | SBH | 0.875923 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001130 | RBH | 0.101541 | 0.057972 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001240 | RBH | 11.364197 | 1.983415 | 9.245715 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0013100 | SBH | 4.8139025 | 5.8982375 | 6.5225565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001160 | SBH | 0.674845 | 0.207849 | 1.722675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001050 | SBH | 0.235434 | 0.054611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001240 | SBH | 1.728759 | 0.531123 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001130 | SBH | 0.287462 | 2.850632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0073210 | SBH | 0.307598 | 0.0 | 0.160412 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001170 | RBH | 0.439994 | 3.612951 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001270 | SBH | 0.271850 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001190 | RBH | 0.112926 | 0.000000 | 0.277813 |
