Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0015060 | OGI:12053070 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:20310945-20314118 | ||||||||
| Gene Symbol | Memp | ||||||||||
| DNA seq | acagaaaataacaaagaacaatgctaattattagtctccagatcaaagttcaattatatccatttaagtttaaagtctgtaagattcaggtaccaacatctagtttagatttagtaaaatgcaaacggacacaacatggaccctctacacgatatcatccaggaacaaacttcactacaaagtacaggtacagcctctctctcagacacagcataaataactgaatttagctccaatttaagccatcccgccactagttgccgtcctgattatctggaacaaggctgcaagacaaccaaatgttagagactgtcatttccatccgttttttgacaactttgtaaggaacacagagttgataaatgaagtttgtgttgcatattgtacacggatagacagaacaggcacgtgtatgaagcaaaagtatgacagaattctactgaaacacagaatagggaaacatgtaagtgaaaagtcacaagagagaagcagctttacatttcctaatttcaactgttatagcatgtaggccagaaaaggactttgtacaaaatgaactgttatcaacaatcaatacatatgttctttggatatactgtattgggaaatatgggaagtgaaagctgagaataattgatgtatcttaggaggaacttaagcaaaaagctcaattttccattatattttagatggtggcttgaaaaattgcagagggtattaacaatttaacatttggaccatggcaggaaaggaaataggcattactcaggaaattaatttgttgaattgacagttctaacacattgtaaatgtgatagtagtcacagtttacatttccttaagcacaggccacatatttaacatataaaaacaaacaacatccctgaatgaatgtactttctattcatcatggataatactccagattttatggtggttaacactacaagaaagttcagaaatatgtcactatatatggttcaacaaccaacatgtttacaatgcactatcaaatgaaaaatatccagccatctagcggcgaaaagacaccttggccaaccatgtttggaaaacctcaaccacaaacttatgagtgataagaaatatcttgttcaacaagtcagacagctaacatggacagtggaaaagagaacctttcctaaggaggtacaaagtcaacctagtggtaagtaaatgttacaggaggccttcagtgcaaaatgctaactcagcagtcataaagctagtcagattgatttcataaagctgaagatgcatatatactattttgtgcatgtgcattcctgcgaaccacaccacaagggatactgaaatatcaaacagacaggaataggaaagtgaagggccaaagcttacatgatccaatgacgacaaaaatgaagaacccaagcaccatgggtccaacagggtagtcattccccttcttcacagtagtctcaggcactgaacccctcttcgtgatattcttctggaactttgcgctcttcctgtcagcaagacgccttgaggtagtctgaatgcaatgaaatagtttaggatacagtaaaaagaaattgcttgaagtggacaaatataacataaggacagaatgtatttgcattctgctaaccataaggaaataacataaaaaggtagtgacattatcccgtaggaggaaacgacaacagctgaatgatgtcagatcgaacttagtatcacttctatcattactaatgaagtaatgataaaacttcagagtatctggtaagctacccctgaaaatgcttactaataaaacaaaataaattttatcatttccctctaacataactactcaatgacccaaaggagctgttgaagaccacaattgtcttaattagaaacaaatatatataaataagtagttcaacaactacaattctcaccatagaaaaaataactaaacccgaggagaacactgattattatattatatatatcattgtagcactcatcagaaatacagaattcagtaataagtacgagcccacaactcaagacaagtgaccggtggcaacaaaggacccaattatatccagaattatccctattttcttaaaacagactgctccgcatttctcatttctaacaccaaacaacaTttcctgctaagatttcaacttttcaaggcttatatgaatttctcatctaaaattgcaggaataagcatgtcatggccgatatatggtactgaaatattgcatccgtttcttataattcatttttttggagatgagcacatcatagcttaattgtataaatgccacagcaattcctatttcttttcaattcattataatcggttcagcagtgcaaTttttatttcttttcaaaagcttaatcgaaataatttcctaccagatcgtattcattggctgcacaactgcatgagttcaacccacacaactgaactccgcaaaaataaaatctaccacactaagctcagaaacatatcgacgaaaccacagatccaccccctgaatcgtgcctatccagcaaaatctacaacagcaatcaaccaaaagcaggaaaaaaaatcgaaggacagacatcaccgctcctgtcttcccccctaaatcatctctattccataattccataatgtggatgatacgaaaccccaacgaagcgggagaaatcaacaaaaccccggctaaaattcgaggtcagatgtcgcagacacgcacgcagatccatatccaaaccgcggcccaaatcccctcatttcaaaacgcaacccccaccgatcaattcctcacggatcgaccaaaatcgctccaccccggaaccacacatacgcatccacacatctcagcctctcagatcacacgaaataataaaactaaaactaaaaaaaaaaatagcgcgaattgaatcgcgaaatcctaaacaatccgagggtaaaaacatttcaggcctgagaaggggctctgcccccctaaccaaactcaccatcctcgtgaacgccggtgatgaactcgccggagtcgagaggcgttcgcggcggcggagaagccggaggggagagagagagaggcagcaggagcagtgtggggcgatgcgggagttttgtgggggagaaaaaaaattgcgaggggttttatacaaaatcgaaccgttctttgtgggagtctg
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| CDS seq | atgactacctcaaggcgtcttgctgacaggaagagcgcaaagttccagaagaatatcacgaagaggggttcagtgcctgagactactgtgaagaaggggaatgactaccctgttggacccatggtgcttgggttcttcatttttgtcgtcattggatcatccttgttccagataatcaggacggcaactagtggcgggatggcttaa |
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| Protein seq | MTTSRRLADRKSAKFQKNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGSSLFQIIRTATSGGMA |
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| Function | Stress-associated endoplasmic reticulum protein 2 [UniProtKB/Swiss-Prot:Q6TAW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0015060 | OsLaMu_12g0015060.01 | Chr12 | 20310945 | 20314118 | - | NAM | ||
| CDS seq | atgactacctcaaggcgtcttgctgacaggaagagcgcaaagttccagaagaatatcacgaagaggggttcagtgcctgagactactgtgaagaaggggaatgactaccctgttggacccatggtgcttgggttcttcatttttgtcgtcattggatcatccttgttccagataatcaggacggcaactagtggcgggatggcttaa
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| Protein seq | MTTSRRLADRKSAKFQKNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGSSLFQIIRTATSGGMA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.292833 | 31.420198 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0514100 | RBH | 11.510326 | 10.794334 | 67.346008 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32950 | RBH | 3.492338 | 2.879601 | 6.872843 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0514100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015110 | RBH | 3.330781 | 71.936424 | 30.857574 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015250 | RBH | 0.822814 | 17.276745 | 18.953064 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015160 | RBH | 2.556626 | 83.546715 | 35.831654 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014960 | RBH | 0.740580 | 2.829004 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014490 | RBH | 38.301983 | 103.951294 | 57.471516 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0266400 | RBH | 21.748432 | 34.907442 | 74.7290875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014660 | RBH | 0.749613 | 7.663755 | 7.516420 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0296600 | RBH | 27.220205 | 27.9293185 | 62.694429 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014860 | RBH | 2.407666 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015050 | RBH | 0.417070 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015000 | SBH | 19.488392 | 94.339645 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014920 | RBH | 3.211891 | 0.0 | 7.030964 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021100 | RBH | 0.313897 | 16.707167 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014960 | RBH | 2.084770 | 23.035652 | 23.146994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014730 | RBH | 3.046297 | 123.899208 | 56.928909 |
