Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_12g0015000 | OGI:12053110 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr12:19542715-19550717 | ||||||||
| Gene Symbol | Memp, - | ||||||||||
| DNA seq | agtctccagatcaaagttcaattatatccatttaagtttaaagtctgtaagattcaggtaccaacatctagtttagatttagtaaaatgcaaacggacacaacatggaccctctacacgatatcatccaggaacaaacttcactacaaagtacaggtacagcctctctctcagacacagcataaataactgaatttagctccaatttaagccatcccgccactagttgccgtcctgattatctggaacaaggctgcaagacaaccaaatgttagagactgtcatttccatccgttttttgacaactttgtaaggaacacagagttgataaatgaagtttgtgttgcatattgtacacggatagacagaacaggcacgtgtatgaagcaaaagtatgacagaattctactgaaacacagaatagggaaacatgtaagtgaaaagtcacaagagagaagcagctttacatttcctaatttcaactgttatagcatgtaggccagaaaaggactttgtacaaaatgaactgttatcaacaatcaatacatatgttctttggatatactgtattgggaaatatgggaagtgaaagctgagaataattgatgtatcttaggaggaacttaagcaaaaagctcaattttccattatattttagatggtggcttgaaaaattgcagagggtattaacaatttaacatttggaccatggcaggaaaggaaataggcattactcaggaaattaatttgttgaattgacagttctaacacattgtaaatgtgatagtagtcacagtttacatttccttaagcacaggccacatatttaacatataaaaacaaacaacatccctgaatgaatgtacTttTCTATTCATCATGGATAATACTCCAGATTTTATGGTGGTTAACACTACAAGAAAGTTCAGAAATATGTCACTATATATGGTTCAACAACCAACATGTTTACAATGCACTATCAAATGAAAAATATCCAGCCATCTAGCGGCGAAAAGACACCTTGGCCAACCATGTTTGGAAAACCCACAAACTTATGAGTGATAAGAAATATCTTGTTCAACAAGTCAGACAGCTAACATGGACAGTGGAAAAGAGAACCTTTCCTAAGGAGGTACAAAGTCAACCTAGTGGTAAGTAAATGttacaggaggccttcagtgcaaaatgctaactcagaagtcatatagctagtcagattgatttcataaagctgaagatgcatatatactattttgtgcatgtgcattcctgcgaaccacaccacaagggatactgaaatatcaaacagacaggaataggaaagtgaagggccaaagcttacatgatccaatgacgacaaaaatgaagaacccaagcaccatgggtccaacagggtagtcattccccttcttcacagtagtctcaggcactgaacccctctttgtgatattcttctggaactttgcgctcttcctgtcagcaagacgccttgaggtagtctgaatgcaatgaaatagtttaggatacagtaaaaagaaattgcttgaagtggacaaatataacataaggacagaatgtatttgcattctgctaaccataaggaaataacataaaaaggtagtgacattatcccgtaggaggaaacgacaacagctgaatgatgtcagatcaaacttagtatcacttctatcattactaatgaagtaatgatAAaacttcagagtatctggtaagctacccctgaaaatgcttactaataaaACcaaataaattttatcatttcccttaacataactactcaatgacccaaaggagctgttgaagaccacaattgtcttaattagaaacaaatatatataaataagtagttcaacaactacaattctcaccatagAaaaaataactaaacccaaggggaacactgattattatattatatatatcattgtagcactcatcagaaatacagaattcagtaataagtacgagcccacaactcaagacaagtgaccggtggcaacaaaggacccaattatatccagaattatccctattttcttAaaacagactgctccgcatttctcatttctaacaccaaacaacatttcctgctaagatttcaacttttcaaggcttatatgaatttctcatctaaaattgcaggaataagcatgtcatggccgatatatggtactgaaatattgcatccgtttcttttaattcaTttttttggagatgagcacatcatagcttaattgtataaatgccacagcaattcctatttcttttcaattcattataatcggttcagcagtgcaatttttatttcttttcaaaagcttaatcgaaataatttcctaccagatcgtattcattggctgcacaactgcatgagttcaacccacacaactgaactccgcaaaaataaaatctaccacactaagctcagaaacatatcgacgaaaccacagatccaccccctgaatcgtgcctatccagcaaaatctacaacagcaatcaaccaaaagcaggaaaaaaaatcgaaggacagacatcaccgctcctgtcttcccccctaaatcatctctattccataattccataatgtggatgatacgaaaccccaacgaagcgggagaaatcaacaaaaccccggctaaaattcgaggtcagatgtcgcagacacgcacgcagatccatatccaaaccgcggcccaaatcccctcatttcaaaacgcaacccccaccgatcaattcctcacggatcgaccaaaatcgctccaccccggaaccacacatacgcatccacacatctcagcctctcagatcacacgaaataataaaactaaaactaaaaaaaaaatagcgcgaattgaatcgcgaaatcctaaacaatccgagggtAaaaacatttcaggcctgagaaggggctctgcccccctaaccaaactcaccatcctcgtgaacgccggtgatgaactcgccggagtcgagaggcgttcgcggcggcggagaagccggagggGAgagagagagaggcagcaggagcagtgtggggcgatgcgggagttttgtgggggagaaaaaaattgcgaggggttttatacaaaatcgaaccgttctttgtgggagtctggactgtttccccgggggagggtgggatatggctggacctggtccatactccggagcgatgtgaaccacccattatgcctcgagattcgtggggtgGGTggtggtgcggtggGCggggtccataggataggtaggcgtgcacgcgaccgaccggggatgggggtggcggggtcgtgacgtagaaggcaaacgttctagaagtttccttggatgggccttgatgtactgggccgcgacgcaacctcttgggccggcccaaatttggcatgccgcctcccgcctgcgatagtactacctcctttgctggaaaaagtacaaggtcgctcaacttctcatcgagttacaaaatcatccccgaaccacaaaaccaagtatctgacgtccctcaactcacaaaatcgttcattttaagtctcttagtggtttttttcaccccggttatatcctacgtggcggctgagtcagtgcgggactcacgtgggccccacttgttaggacgccatgtaagcacactctctcttccccctcctctcccttcctcactttctctctctctctctcacttctcctctacaggatcacggccggtaggggaggagtgtcggcggctggcggaggagGAggtacggcgtggcgagtgcggcgggtacgtccggcggccaacaggggaggagggctagcgcgacgggcacggccggcggccggcatgggaggaggccctggcccagcgcatgcggcgggggcgtctggcggccggcaGgggggagcgcagcggagaggagggccggtgcgacgggcggcggggaaggagtggggctgggctaacaattggaGgggagaggaacAaaggtggagacggacgcggtggcggcgccaccagcgacggcctcttcctcgccctcgcctcgcgtcatctcgctttccgctctgctcgacgggaggcgactccagcggtcgcccgcacgtcctcctaaacctggcggcattgtccctcgttggcggcggcgacgctagctggcgaagacgagtggggagagaagcagcggccgacggagaggagcttggcgttggcagtgacggccgtcggctagaCccagcgggcgtcgtcctttgccaggaacgcgtagcagtgagatcggacgtcgagcccggcgagcttgtcgGAgaggtcgagatcgactcccatggcatgggcgagctccccgttgctgtcagagatgaggagcacctcatcacggcggcatcatccgcgactttgcagaatcgccagcctccccgcttcgccccgtcggcctccttcctacctgccggttgcggtggcagtggcggtggcggtggggcggcgtggggggaggccctcctggtccggtgctcccgcgccgtcgcttcctctcatcttcttctccatggccactataaatacacaatacaccttgccatgcacactcccagacccagcacacagcaagcagcagtagcagtggcaagctcgagctagctacaaatacaagctagcagcctagcaaagctcgatcgatagcaatggcggcgaaggcggtgcttgttctggtggtgcttgttctggcggtgagcctcctcaccgtggccgtggtggcgagcgcctgtggctccaactgcccgctgaggccgacgccgacacccagcaccgggtcgtcgtcgagcccacgcgacgcgctaaagctgcgcgtgtgcgccaatgtgcttggcctctgctgctccctgctcgacggccttctcccacgtcgcagcCAACCGCCGCCTCCCACCTCGCCCCGGCGGCCTCCTCCCAACTGCCAGCCAGCTCGCCCAGAGAAAAGAAGAGTGAGAGAGAGAGAGAGGAGGAGGAAGGGAGAGCCGGAGAGAAGGGGGAGAGAGAGAGGATGATGACGTGGCATACTGACACATGGGGCCCACGTGGGTCCCACGCTGACTCAGCCGCCACGTCGGACAAAACCGGGGTCAAAACCATCGAAGGGCCTAATGTTACCGGTTTTGATTAGTTGAGAGACGCCGGATATCTGGTTTTGTGTTTCGGGGACGATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGATGTACTTTTTTCCCTCATTTGCTTGAGAAATTGTTATAGCTTGAGACAACTTTGTAGtttaaaattgttatattttgtgacgaatagagtaacagtttttatatggccagtaacggtccatcactcttaaatttacgagtgttttagctttcaagtttgctaaaaatgcaggaggacaagttggcattgggatgaagttatagggtgggtttggtttgttaacatactaaatctttgatagtgtcaaattcttgataagtattggtatgtactatcatttcatttcttttaagtaggatagagttgtagtacgaatgtttggatgggcagaggattactaccaatgtgaagtcaaattgattttaggcattactaattatttggctttaaatcgaatagccaatattactattcaagctatcaatagtaggacacattttgtcatcaattcaaaatagcccatggtaagattaagccatttttttttaaaaaaaatgttagagcttctgtagtgaggccagtatggctatccatgtaGgggcggtttgatcaacaacctAaaaatccgaccaggtcacaaatgggcggtctacaatctgatcggcattggccacatggtctaaccgacagacttaagttcaagtgcaattatagtacatctcgtcttttaaaaactaattgatctctaaacctactaaacatgtagagaccatggtattacatgaaaatatcttactacgatccaacatataattaattagctactcgaatggtcctttttctctacctttgccgtagtttagtgcttcgtccatctacatcggtttgctctataagcagcgtggagccaccatccgggctcactgtcaaatacactgttaaaattttattttatttgaaagaattaaagataaaaatattatagcaaatattaggtatatttgagttttcctgtgcttggaaagttttctaggtccaccactatctataagggcatcctcaatgtttgtagtgtagtgtaaccttaaggtgggccctatgaatagtgagccattgttatagccatacccacgatgctatggttagaatttagccacaagatggcccacgtagaatggaaaaataattgcttcatctcttgttcatgaagtgaatgagagagaaaaaatattttctttttgcttgtggtagaacttaagcataaggtgcattctaagctaatgctactttccacaatgtatatggcttactttacaagtgcaatcattgtcttaaggtcacctttttcatacgttgtggttgccctaagtgtctttcttaatttaccgtgacggtgaggatctataggtttttcttgaaatataactatttgttgtagtatgcgtaagttacatactcaaatataaacatttgttaaattttgagtatattagattaggagctactccttgtgtcaaaaaagtcaaaacgctgggtttacgtgccaacgtttgactgtccgtgttatatgaaatttttttataattagtattttcattgttgttagatgataaaACATGATTAATACTTTATGCGTGACTTATCTTTTTAATTttttttcatatttttttaaataaaatagatggtcaaacgttggacacgaaaaccaggttcgttttttttttcgacggaggaagtataggtgaagtggtaccagatttgagacccactaacagaaggcgatttgagtggactcacgcatgcggacgtgcctgccgcactcacacggtgtccatcgattgattcacgccgacaccaaccttaatagtcttttaaaaaaaagacaccaactttaatacgtcattaaccagtacactatataaaaaattttagttagatgtgatatttttcagtacagtgaatctggacagctttcatgtttagatttattataatagaatatgtcacatccaaccaaaattatttatatttaggatggagggagggcgtattaaacaggcgatttggtcgtcggcaaatctgacttaattattatcatccactgccataagcccataacagttattaccaacgatttaacgaacttaattacgtgtcagtgagccagtctcgcttaatttaattctgaaactacaaagaaattaaactccatcgaagcagctaaactagccttgcctaccacgtgttcgcgccattgccggagacggcgccggcgctgctcttgcggccgccgccgccgccgccgtagaggcggaacaggttgaacgcggagacggcggcgaggagcacggcggcgaggcccgcggcgacggcggcggcgaggccctccccgacgcggcggcagaacgcgccgtagaggccgcagacaggcatccactgcagctccggctgcccgcgcttccccaccaccgacgactgcagcgccgccgccgtcgccgccatcagcgcgtacgccaccgcctggtcgcacgagaacaccgaccacgccaccaccgccgcgccgccattgctgccgcccttccacgccgcggccgcggcgcaccgcgccagctggagcaggctgtacacggcggcggcgccgtgggcggcgacgaggaggacgagtgccttcatgtccgtgaacctggccttcttctccagcgagaagaaggtcctcgtctggcttcccgtgcccaccagcgccgccgccagcgccgccagggcgcacaccgcgcaccgcagcgccacctccgccaccttcgccttcctctccaaccccatcgccgccgccat
More
|
||||||||||
| CDS seq | atggcggcggcgatggggttggagaggaaggcgaaggtggcggaggtggcgctgcggtgcgcggtgtgcgccctggcggcgctggcggcggcgctggtgggcacgggaagccagacgaggaccttcttctcgctggagaagaaggccaggttcacggacatgaaggcactcgtcctcctcgtcgccgcccacggcgccgccgccgtgtacagcctgctccagctggcgcggtgcgccgcggccgcggcgtggaagggcggcagcaatggcggcgcggcggtggtggcgtggtcggtgttctcgtgcgaccaggcggtggcgtacgcgctgatggcggcgacggcggcggcgctgcagtcgtcggtggtggggaagcgcgggcagccggagctgcagtggatgcctgtctgcggcctctacggcgcgttctgccgccgcgtcggggagggcctcgccgccgccgtcgccgcgggcctcgccgccgtgctcctcgccgccgtctccgcgttcaacctgttccgcctctacggcggcggcggcggcggccgcaagagcagcgccggcgccgtctccggcaatggcgcgaacacgtggcgtcttgctgacaggaagagcgcaaagttccagaagaatatcacaaagaggggttcagtgcctgagactactgtgaagaaggggaatgactaccctgttggacccatggtgcttgggttcttcatttttgtcgtcattggatcatataatcaggacggcaactag
More
|
||||||||||
| Protein seq | MAAAMGLERKAKVAEVALRCAVCALAALAAALVGTGSQTRTFFSLEKKARFTDMKALVLLVAAHGAAAVYSLLQLARCAAAAAWKGGSNGGAAVVAWSVFSCDQAVAYALMAATAAALQSSVVGKRGQPELQWMPVCGLYGAFCRRVGEGLAAAVAAGLAAVLLAAVSAFNLFRLYGGGGGGRKSSAGAVSGNGANTWRLADRKSAKFQKNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGSYNQDGN |
||||||||||
| Function | CASP-like protein 2B1 [UniProtKB/Swiss-Prot:Q0IN16] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_12g0015000 | OsGoSa_12g0015000.01 | Chr12 | 19542936 | 19550717 | - | NAM | ||
| CDS seq | atggcggcggcgatggggttggagaggaaggcgaaggtggcggaggtggcgctgcggtgcgcggtgtgcgccctggcggcgctggcggcggcgctggtgggcacgggaagccagacgaggaccttcttctcgctggagaagaaggccaggttcacggacatgaaggcactcgtcctcctcgtcgccgcccacggcgccgccgccgtgtacagcctgctccagctggcgcggtgcgccgcggccgcggcgtggaagggcggcagcaatggcggcgcggcggtggtggcgtggtcggtgttctcgtgcgaccaggcggtggcgtacgcgctgatggcggcgacggcggcggcgctgcagtcgtcggtggtggggaagcgcgggcagccggagctgcagtggatgcctgtctgcggcctctacggcgcgttctgccgccgcgtcggggagggcctcgccgccgccgtcgccgcgggcctcgccgccgtgctcctcgccgccgtctccgcgttcaacctgttccgcctctacggcggcggcggcggcggccgcaagagcagcgccggcgccgtctccggcaatggcgcgaacacgtggcgtcttgctgacaggaagagcgcaaagttccagaagaatatcacaaagaggggttcagtgcctgagactactgtgaagaaggggaatgactaccctgttggacccatggtgcttgggttcttcatttttgtcgtcattggatcatataatcaggacggcaactag
More
|
|||||||
| Protein seq | MAAAMGLERKAKVAEVALRCAVCALAALAAALVGTGSQTRTFFSLEKKARFTDMKALVLLVAAHGAAAVYSLLQLARCAAAAAWKGGSNGGAAVVAWSVFSCDQAVAYALMAATAAALQSSVVGKRGQPELQWMPVCGLYGAFCRRVGEGLAAAVAAGLAAVLLAAVSAFNLFRLYGGGGGGRKSSAGAVSGNGANTWRLADRKSAKFQKNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGSYNQDGN
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_12g0015000 | OsGoSa_12g0015000.02 | Chr12 | 19542715 | 19545788 | - | IsoSeq | ||
| CDS seq | acaaaactcccgcatcgccccacactgctcctgctgcctctctctctcTCccctccggcttctccgccgccgcgaacgcctctcgactccggcgagttcatcaccggcgttcacgaggatgactacctcaaggcgtct |
|||||||
| Protein seq | TKLPHRPTLLLLPLSLSPPASPPPRTPLDSGEFITGVHEDDYLKAS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 19542955 | 19544056 | - | OsGoSa_12g0015000.02 | OsGoSa_12g0015000.01,OsGoSa_12g0015000.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 19.488392 | 94.339645 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0514100 | RBH | 11.510326 | 10.794334 | 67.346008 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32970 | RBH | 0.0 | 0.0 | 0.171627 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0514100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015130 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015180 | RBH | 0.506402 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014510 | RBH | 0.0 | 16.854057 | 1.395190 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0266800 | RBH | 1.4837955 | 1.10558 | 2.423711 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014680 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0296900 | RBH | 1.590142 | 0.276572 | 0.365535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006980 | RBH | 0.0 | 16.196421 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014940 | RBH | 0.0 | 0.0 | 0.949970 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014980 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014750 | RBH | 0.0 | 0.0 | 0.0 |
