Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0008290 | OGI:12030330 | 7/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:8672541-8676090 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacgctcttacaaacagcgtccagatctggaagctctttcaaacagcgtccatcttcctggtgcagccagaccctcaagacgctaccgatacgctaagagaagtatcgaaacaaaagttgttcgacctagctagggttagggatcgccggcatcgtcgtatgcgcctgttcgccttcgatccgtacgcttcaccctgcaaaccacgccgtactgtcgttgtcgacgccggcgccttggatttgttcattactcagcgccatcaatccagccacggcgtcttcagcggcaagttcgttggctgctcgccggccggcaacaggtgaactgcaagacatgcatgcattatgtctttcacattgatctgcatatgtacgtctttctgtgggagctaggcaacaggtgcccatgcatacgtttagctaattagcattgatcagctgctgcctgctgtatacattgtgttcatacgtactttatatatattgacatgtttgtgtagttggatcggtagtgcatgttcttaaattataagctattcgttgatatttttaataagcaaatcaacattttttaaaaaaaaatctgaaggatatatgaatagattattatttaactagtagttatataacttgctttgttaaattaaattaggagatatatgtacagattattatctaactactaattatttaacttgatttgttaaattattgagtttgttttgcacagatggctgagagaaaaatgattattgttctagtatatatcgatggtagaatacaacatggagataagggtgtggaatataacattcctccaaaaataacttttccggcacttgaggctacaacctttgaagaagtcagaaatgaaatttttcaagcccttgggtacactgaggatcattgtgcaatgagtatccaagctcggtttgatatcggaaatcctggaccacaatattttcaactcattcctatttatgaagacaggggatgaaagatgatattcgagaagacgtgtgggcaagttgttgagctttatgtcaattgcacatctgcggaagcaagattaagtcaagttaatagtatgcccttggttgaatcaagcaggcattcggaaagggatggctcaggtgtttctttggagccgggtcattcggaaagggatggctcaggtgtttctttggagccagataccattcattctgcaggacatgtcgtatccactttaacccatgacctgcattcaacagcattgccgttgtctccacaaaccaaccaaggtaacatggaatacgaaacaacgacaactataggtgatgccaatattgctgaagacacatatgtaggtgaggagacagatcttgcagagaatggacaagatagtggtaacgagcatgattctgatgatgcccttaacaatagttcagatgatgatatttcagaaccacgtgttactcattctgtcaatgcctttcctttgatgcgtgcatctggacaagatgctataaaagcattcagtgatatatctgtactaaggaagacaacagcagatgagaatttctttggatgcaagaatcaatttgacaatccactagcagaagcaaagacttttgattcaaaagagcatctacagattgccataggtgagtttcatatcaataaaaattcagaaattaaatatagcacaagtagtcagtctaagcttatagctcagtgcacggatactagttgcatgtggaggctgtatgcaacaccgataggaataggctcatgttggatgataaggaaatgtccgtatgctcacacttgtagagcaccggctgatagatttgatcatgctcagttatcgtctgctatgattgctaatgtgatacgtgatgcattaagggatgacttggaattaagtatAaaaaatgtgagatcactagtccagcagagatatagaaatgtgaagccatcttacagtaagttatggtgtggtagagagaaagcaatagcacaactttttggtagctgggaaggttcatatggtctgcttatccctttcttagaggctataaaatctaaaaaccctggtacaaagtatgttcttttgtcgaatccaacgactcaggaagggcagcgatcatttaaaagtgtggcttgggcatttggaccatgcattaatgccattccatacttacggccagtaataagtgttgatgcatgctttttgtcagggagatacaagggtagattgttgattgcttgtggatatgatgctaacaatcagctactacctcttgcatttgctattgtagagaaggaagatagtacaaactgggggtggtttatgagatggctacggaaggaggtaataggatatggaaagtttatgtgtgttatatctgaccgacataaagccatcaaatggttgtttaagcaacctcacattggatggaatgagggtgccggtgaatgcgtgcaccgtctttgctcacagcatgtagctgagaatctatggaaagcttgtcgtaatgacatggtgctcaagacatttaagtgggcagtgaagaaaaagaaaccccgaaaatttgaagaaggaatgtcatcgattgcaaatatttgtcctgaggcaataacatatcttgaaaaagttgggaagtatttgcaagaagataaagatgagcaagaaaagcctgagaaggtatttcaatgtaaggatgggggatatcgttggggaatcatgacaagcaatggatccgagtccttgaacaacgtttttaagttttctcgaaggttaccagtggcagccattgtggaggaaacattttcaaagtgcttagaatggtttgttgaacgaagacggatcgctctcaacttagtgcacagtggtaagctttggtctcaacgggttgaaaagttattggttaagcgaggagacaaggctagacgtatgagtgtaatctcatatggagaagaagttggaatatacgaggtgaaggttgacaacgaattagtcccaatgcaacaaggaaaccatgtgttttacacacgcagagacttcaagtacaaggtagttttgcaacccaacatcccaccatcctgtgattgtttgaagccaaatctaaccggtgttccatgtgctcatgtattggcggtttgcaagcacagaaatcttagtgaaaatgaattgatcgttccgttctactcttctcaatcacttgcgaacacctgggcggggcaatttcatccttatggaaaccaaactgaatggccaccttttactggtccaataattgttcctgatcgtagactgataaatcttggccgtcgtcagcataacaggattccaatgtacatggatgaaatgcaaggaaggagacttagacaccaggcacgccgttccacaagagatagcgaccatagtgaattaggtagaaaccaatttgagtaacttataaaatggtgatttaatttctatgtcatataattctctgattttttttttgtaggcgcaatgtcgagcggaacgcagggtaatggaaccatcggcagcctatag
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| CDS seq | atgatattcgagaagacgtgtgggcaagttgttgagctttatgtcaattgcacatctgcggaagcaagattaagtcaagttaatagtatgcccttggttgaatcaagcaggcattcggaaagggatggctcaggtgtttctttggagccgggtcattcggaaagggatggctcaggtgtttctttggagccagataccattcattctgcaggacatgtcgtatccactttaacccatgacctgcattcaacagcattgccgttgtctccacaaaccaaccaaggtaacatggaatacgaaacaacgacaactataggtgatgccaatattgctgaagacacatatgtaggtgaggagacagatcttgcagagaatggacaagatagtggtaacgagcatgattctgatgatgcccttaacaatagttcagatgatgatatttcagaaccacgtgttactcattctgtcaatgcctttcctttgatgcgtgcatctggacaagatgctataaaagcattcagtgatatatctgtactaaggaagacaacagcagatgagaatttctttggatgcaagaatcaatttgacaatccactagcagaagcaaagacttttgattcaaaagagcatctacagattgccataggtgagtttcatatcaataaaaattcagaaattaaatatagcacaagtagtcagtctaagcttatagctcagtgcacggatactagttgcatgtggaggctgtatgcaacaccgataggaataggctcatgttggatgataaggaaatgtccgtatgctcacacttgtagagcaccggctgatagatttgatcatgctcagttatcgtctgctatgattgctaatgtgatacgtgatgcattaagggatgacttggaattaagtatAaaaaatgtgagatcactagtccagcagagatatagaaatgtgaagccatcttacagtaagttatggtgtggtagagagaaagcaatagcacaactttttggtagctgggaaggttcatatggtctgcttatccctttcttagaggctataaaatctaaaaaccctgctgagaatctatggaaagcttgtcgtaatgacatggtgctcaagacatttaagtgggcagtgaagaaaaagaaaccccgaaaatttgaagaaggaatgtcatcgattgcaaatatttgtcctgaggcaataacatatcttgaaaaagttgggaaacgtatgagtgtaatctcatatggagaagaagttggaatatacgaggtgaaggttgacaacgaattagtcccaatgcaacaaggaaaccatgtgttttacacacgcagagacttcaagtacaaggtagttttgcaacccaacatcccaccatcctgtgattgtttgaagccaaatctaaccggtgttccatgtgctcatgtattggcggtttgcaagcacagaaatcttagtgaaaatgaattgatcgttccgttctactcttctcaatcacttgcgaacacctgggcggggcaatttcatccttatggaaaccaaactgaatggccaccttttactggtccaataattgttcctgatcgtagactgataaatcttggccgtcgtcagcataacaggattccaatgtacatggatgaaatgcaaggaaggagacttagacaccaggcacgccgttccacaagagatagcgaccatagcgcaatgtcgagcggaacgcagggtaatggaaccatcggcagcctatag
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| Protein seq | MIFEKTCGQVVELYVNCTSAEARLSQVNSMPLVESSRHSERDGSGVSLEPGHSERDGSGVSLEPDTIHSAGHVVSTLTHDLHSTALPLSPQTNQGNMEYETTTTIGDANIAEDTYVGEETDLAENGQDSGNEHDSDDALNNSSDDDISEPRVTHSVNAFPLMRASGQDAIKAFSDISVLRKTTADENFFGCKNQFDNPLAEAKTFDSKEHLQIAIGEFHINKNSEIKYSTSSQSKLIAQCTDTSCMWRLYATPIGIGSCWMIRKCPYAHTCRAPADRFDHAQLSSAMIANVIRDALRDDLELSIKNVRSLVQQRYRNVKPSYSKLWCGREKAIAQLFGSWEGSYGLLIPFLEAIKSKNPAENLWKACRNDMVLKTFKWAVKKKKPRKFEEGMSSIANICPEAITYLEKVGKRMSVISYGEEVGIYEVKVDNELVPMQQGNHVFYTRRDFKYKVVLQPNIPPSCDCLKPNLTGVPCAHVLAVCKHRNLSENELIVPFYSSQSLANTWAGQFHPYGNQTEWPPFTGPIIVPDRRLINLGRRQHNRIPMYMDEMQGRRLRHQARRSTRDSDHSAMSSGTQGNGTIGSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0008290 | OsLaMu_12g0008290.02 | Chr12 | 8673544 | 8676090 | + | NAM | ||
| CDS seq | atgatattcgagaagacgtgtgggcaagttgttgagctttatgtcaattgcacatctgcggaagcaagattaagtcaagttaatagtatgcccttggttgaatcaagcaggcattcggaaagggatggctcaggtgtttctttggagccgggtcattcggaaagggatggctcaggtgtttctttggagccagataccattcattctgcaggacatgtcgtatccactttaacccatgacctgcattcaacagcattgccgttgtctccacaaaccaaccaaggtaacatggaatacgaaacaacgacaactataggtgatgccaatattgctgaagacacatatgtaggtgaggagacagatcttgcagagaatggacaagatagtggtaacgagcatgattctgatgatgcccttaacaatagttcagatgatgatatttcagaaccacgtgttactcattctgtcaatgcctttcctttgatgcgtgcatctggacaagatgctataaaagcattcagtgatatatctgtactaaggaagacaacagcagatgagaatttctttggatgcaagaatcaatttgacaatccactagcagaagcaaagacttttgattcaaaagagcatctacagattgccataggtgagtttcatatcaataaaaattcagaaattaaatatagcacaagtagtcagtctaagcttatagctcagtgcacggatactagttgcatgtggaggctgtatgcaacaccgataggaataggctcatgttggatgataaggaaatgtccgtatgctcacacttgtagagcaccggctgatagatttgatcatgctcagttatcgtctgctatgattgctaatgtgatacgtgatgcattaagggatgacttggaattaagtatAaaaaatgtgagatcactagtccagcagagatatagaaatgtgaagccatcttacagtaagttatggtgtggtagagagaaagcaatagcacaactttttggtagctgggaaggttcatatggtctgcttatccctttcttagaggctataaaatctaaaaaccctgctgagaatctatggaaagcttgtcgtaatgacatggtgctcaagacatttaagtgggcagtgaagaaaaagaaaccccgaaaatttgaagaaggaatgtcatcgattgcaaatatttgtcctgaggcaataacatatcttgaaaaagttgggaaacgtatgagtgtaatctcatatggagaagaagttggaatatacgaggtgaaggttgacaacgaattagtcccaatgcaacaaggaaaccatgtgttttacacacgcagagacttcaagtacaaggtagttttgcaacccaacatcccaccatcctgtgattgtttgaagccaaatctaaccggtgttccatgtgctcatgtattggcggtttgcaagcacagaaatcttagtgaaaatgaattgatcgttccgttctactcttctcaatcacttgcgaacacctgggcggggcaatttcatccttatggaaaccaaactgaatggccaccttttactggtccaataattgttcctgatcgtagactgataaatcttggccgtcgtcagcataacaggattccaatgtacatggatgaaatgcaaggaaggagacttagacaccaggcacgccgttccacaagagatagcgaccatagcgcaatgtcgagcggaacgcagggtaatggaaccatcggcagcctatag
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| Protein seq | MIFEKTCGQVVELYVNCTSAEARLSQVNSMPLVESSRHSERDGSGVSLEPGHSERDGSGVSLEPDTIHSAGHVVSTLTHDLHSTALPLSPQTNQGNMEYETTTTIGDANIAEDTYVGEETDLAENGQDSGNEHDSDDALNNSSDDDISEPRVTHSVNAFPLMRASGQDAIKAFSDISVLRKTTADENFFGCKNQFDNPLAEAKTFDSKEHLQIAIGEFHINKNSEIKYSTSSQSKLIAQCTDTSCMWRLYATPIGIGSCWMIRKCPYAHTCRAPADRFDHAQLSSAMIANVIRDALRDDLELSIKNVRSLVQQRYRNVKPSYSKLWCGREKAIAQLFGSWEGSYGLLIPFLEAIKSKNPAENLWKACRNDMVLKTFKWAVKKKKPRKFEEGMSSIANICPEAITYLEKVGKRMSVISYGEEVGIYEVKVDNELVPMQQGNHVFYTRRDFKYKVVLQPNIPPSCDCLKPNLTGVPCAHVLAVCKHRNLSENELIVPFYSSQSLANTWAGQFHPYGNQTEWPPFTGPIIVPDRRLINLGRRQHNRIPMYMDEMQGRRLRHQARRSTRDSDHSAMSSGTQGNGTIGSL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0008290 | OsLaMu_12g0008290.01 | Chr12 | 8672541 | 8673540 | + | NAM | ||
| CDS seq | atggacgctcttacaaacagcgtccagatctggaagctctttcaaacagcgtccatcttcctggtgcagccagaccctcaagacgctaccgatacgctaagagaagtatcgaaacaaaagttgttcgacctagctagggttagggatcgccggcatcgtcgtatgcgcctgttcgccttcgatccgtacgcttcaccctgcaaaccacgccgtactgtcgttgtcgacgccggcgccttggatttgttcattactcagcgccatcaatccagccacggcgtcttcagcggcaagttcgttggctgctcgccggccggcaacagaatacaacatggagataagggtgtggaatataacattcctccaaaaataacttttccggcacttgaggctacaacctttgaagaagtcagaaatgaaatttttcaagcccttgggtacactgaggatcattgtgcaatgagtatccaagctcggtttgatatcggaaatcctggaccacaatattttcaactcattcctatttatgaagacaggggatga
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| Protein seq | MDALTNSVQIWKLFQTASIFLVQPDPQDATDTLREVSKQKLFDLARVRDRRHRRMRLFAFDPYASPCKPRRTVVVDAGALDLFITQRHQSSHGVFSGKFVGCSPAGNRIQHGDKGVEYNIPPKITFPALEATTFEEVRNEIFQALGYTEDHCAMSIQARFDIGNPGPQYFQLIPIYEDRG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.807796 | 3.024149 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0621300 | SBH | 0.235494 | 0.122373 | 1.401777 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0621300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008260 | RBH | 1.316493 | 1.012577 | 2.745976 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008410 | RBH | 0.715656 | 1.964970 | 1.530130 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008420 | RBH | 1.725189 | 0.942405 | 5.604936 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015640 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010050 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010090 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009650 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0009820 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0009680 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009930 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0009890 | SBH | 0.0 | 0.0 | 0.0 |
