Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0008410 | OGI:12030330 | 7/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:8014775-8018215 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatgctcttacaaacagcgtccagatctggaagctctttcaaacagcgtccatcttcctggtgcagccagaccctcaagacgctaccgatacgctaagagaagtatcgaaacaaaagttgttcgacctagctagggttagggatcgccggcatcgtcgtatgcgcctgttcgccttcgatccgtacgcttcaccctgcaaaccacgccgtactgtcgttgtcgacgccggcgccttggatttgttcattactcagcgccatcaatccagccacggcgtcttcagcggcaagttcgttggctgctcgccggccggcaacaggtgaactgcaagacatgcatgcattatgtctttcacattgatctgcatatgtacgtctttctgtgggagctaggcaacaggtgcccatgcatacgtttagctaattagcattgatcagctgctgcctgctgtatacattgtgttcatacgtactttatatatattgacatgtttgtgtagttggatcggtagtgcatgttcttaaattataagctattcgttgatatttttaataagcaaatcaacatttttttaaaaaaatctgaaggatatatgaatagattattatttaactagtagttatataacttgctttgttaaattaaattaggagatatatgtacagattattatctaactactaattatttaacttgatttgttaaattattgagtttgttttgcacagatggctgagagaaaaataattattgttctagtatatatcgatggtagaatacaacatggagataagggtgtggaatataacattcctccaaaaataacttttccggcacttgaggctacaacctttgaagaagtcagaaatgaaatttttcaagcccttgggtacactgaggatcattgtgcaatgagtatccaagctcggtttgatatcggaaatcctggaccacaatattttcaactcattcctatttatgaagacaggggatgaaagatgatattcgagaagacgtgtgggcaagttgttgagctttatgtcaattgcacatctgcggaagcaagattaagtcaagttaatagtatgcccttggttgaatcaagcaggcattcggtaagggatggctcaggtgtttctttggagccgggtcattcggAaagggatggctcaggtgtttctttggagccagataccattcattctgcaggacatgtcgtatccactttaacccatgacctgcattcaacagcattgccgttgtctccacaaaccaaccaaggtaacatggaatacgaaacaacgacaactataggtgatgccaatattgctgaagacacatatgtaggtgaggagacagatcttgcagagaatggacaagatagtggtaacgagcatgattctgatgatgcccttaacaatagttcagatgatgatatttcagaaccacgtgttactcattctgtcaatgcctttcctttgatgcgtgcatctggacaagatgctataaaagcattcagtgatatatctgtactaaggaagacaacagcagatgagaatttctttggatgcaagaatcaatttgacaatccactagcagaagcaaagacttttgattcaaaagagcatctacagattgccataggtgagtttcatatcaataaaaattcagaaattaaatatagcacaagtagtcagtctaagcttatagctcagtgcacggatactagttgcatgtggaggctgtatgcaacaccgataggaataggctcatgttggatgataaggaaatgtccgtatgctcacacttgtagagcaccggctgatagatttgatcatgctcagttatcgtctgctatgattgctaatgtgatacgtgatgcattaagggatgacttggaattaagtataaaaaatgtgagatcactagtccagcagagatatagaaatgtgaagccatcttacagtaagttatggtgtggtagagagaaagcaatagcacaactttttggtagctgggaaggttcatatggtctgcttatccctttcttagaggctataaaatctaaaaaccctggtacaaagtatgttcttttgtcgaatccaacgactcaggaagggcagcgatcatttaaaagtgtggcttgggcatttggaccatgcattaatgccattccatacttacggccagtaataagtgttgatgcatgctttttgtcagggagatacaagggtagattgttgattgcttgtggatatgatgctaacaatcagctactacctcttgcatttgctattgtagagaaggaagatagtacaaactGggggtggtttatgagatggctacggaaggaggtaataggatatggaaagtttatgtgtgttatatctgaccgacataaagccatcaaatggttgtttaagcaacctcacattggatggaatgagggtgccggtgaatgcgtgcaccgtctttgctcacagcatgtagctgagaatctatggaaagcttgtcgtaatgacatggtgctcaagacatttaagtgggcagtgaagaaaaagaaaccccgaaaatttgaagaaggaatgtcatcgattgcaaatatttgtcctgaggcaataacatatcttgaaaaagttgggaagtatttgcaagaagataaagatgagcaagaaaagcctgagaaggtatttcaatgtaaggatgggggatatcgttGgggaatcatgacaagcaatggatccgagtccttgaacaacgTttttaagttttctcgaaggttaccagtggcagccattgtggaggaaacattttcaaagtgcttagaatggtttgttgaacgaagacggatcgctctcaacttagtgcacagtggtaagctttggtctcaacgggttgaaaagttattggttaagcgaggagacaaggctagacgtatgagtgtaatctcatatggagaagaagttggaatatacgaggtgaaggttgacaacgaattagtcccaatgcaacaaggaaaccatgtgttttacacacgcagagacttcaagtacaaggtagttttgcaacccaacatcccaccatcctgtgattgtttgaagccaaatctaaccggtgttccatgtgctcatgtattggcggtttgcaagcacagaaatcttagtgaaaatgaattgatcgttccgttctactcttctcaatcacttgcgaacacctgggtggggcaatttcatccttatggaaaccaaactgaatggccaccttttactggtccaataattgttcctgatcgtagactgataaatcttggccgtcgtcagcataacaggattccaatgtacatggatgaaatgcaaggaaggagacttagacaccaggcacgccgttccacaagagatagcgaccatagtgaattaggtagaaaccaatttgagtaa
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| CDS seq | atggatgctcttacaaacagcgtccagatctggaagctctttcaaacagcgtccatcttcctggtgcagccagaccctcaagacgctaccgatacgctaagagaagtatcgaaacaaaagttgttcgacctagctagggttagggatcgccggcatcgtcgtatgcgcctgttcgccttcgatccgtacgcttcaccctgcaaaccacgccgtactgtcgttgtcgacgccggcgccttggatttgttcattactcagcgccatcaatccagccacggcgtcttcagcggcaagttcgttggctgctcgccggccggcaacaggcattcggtaagggatggctcaggtgtttctttggagccgggtcattcggAaagggatggctcaggtgtttctttggagccagataccattcattctgcaggacatgtcgtatccactttaacccatgacctgcattcaacagcattgccgttgtctccacaaaccaaccaaggtaacatggaatacgaaacaacgacaactataggtgatgccaatattgctgaagacacatatgtaggtgaggagacagatcttgcagagaatggacaagatagtggtaacgagcatgattctgatgatgcccttaacaatagttcagatgatgatatttcagaaccacgtgttactcattctgtcaatgcctttcctttgatgcgtgcatctggacaagatgctataaaagcattcagtgatatatctgtactaaggaagacaacagcagatgagaatttctttggatgcaagaatcaatttgacaatccactagcagaagcaaagacttttgattcaaaagagcatctacagattgccataggtgagtttcatatcaataaaaattcagaaattaaatatagcacaagtagtcagtctaagcttatagctcagtgcacggatactagttgcatgtggaggctgtatgcaacaccgataggaataggctcatgttggatgataaggaaatgtccgtatgctcacacttgtagagcaccggctgatagatttgatcatgctcagttatcgtctgctatgattgctaatgtgatacgtgatgcattaagggatgacttggaattaagtataaaaaatgtgagatcactagtccagcagagatatagaaatgtgaagccatcttacaaagttggaatatacgaggtgaaggttgacaacgaattagtcccaatgcaacaaggaaaccatgtgttttacacacgcagagacttcaagtacaaggtagttttgcaacccaacatcccaccatcctgtgattgtttgaagccaaatctaaccggtgttccatgtgctcatgtattggcggtttgcaagcacagaaatcttagtgaaaatgaattgatcgttccgttctactcttctcaatcacttgcgaacacctgggtggggcaatttcatccttatggaaaccaaactgaatggccaccttttactggtccaataattgttcctgatcgtagactgataaatcttggccgtcgtcagcataacaggattccaatgtacatggatgaaatgcaaggaaggagacttagacaccaggcacgccgttccacaagagatagcgaccatagtgaattaggtagaaaccaatttgagtaa
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| Protein seq | MDALTNSVQIWKLFQTASIFLVQPDPQDATDTLREVSKQKLFDLARVRDRRHRRMRLFAFDPYASPCKPRRTVVVDAGALDLFITQRHQSSHGVFSGKFVGCSPAGNRHSVRDGSGVSLEPGHSERDGSGVSLEPDTIHSAGHVVSTLTHDLHSTALPLSPQTNQGNMEYETTTTIGDANIAEDTYVGEETDLAENGQDSGNEHDSDDALNNSSDDDISEPRVTHSVNAFPLMRASGQDAIKAFSDISVLRKTTADENFFGCKNQFDNPLAEAKTFDSKEHLQIAIGEFHINKNSEIKYSTSSQSKLIAQCTDTSCMWRLYATPIGIGSCWMIRKCPYAHTCRAPADRFDHAQLSSAMIANVIRDALRDDLELSIKNVRSLVQQRYRNVKPSYKVGIYEVKVDNELVPMQQGNHVFYTRRDFKYKVVLQPNIPPSCDCLKPNLTGVPCAHVLAVCKHRNLSENELIVPFYSSQSLANTWVGQFHPYGNQTEWPPFTGPIIVPDRRLINLGRRQHNRIPMYMDEMQGRRLRHQARRSTRDSDHSELGRNQFE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0008410 | OsKeNa_12g0008410.01 | Chr12 | 8014775 | 8018215 | + | NAM | ||
| CDS seq | atggatgctcttacaaacagcgtccagatctggaagctctttcaaacagcgtccatcttcctggtgcagccagaccctcaagacgctaccgatacgctaagagaagtatcgaaacaaaagttgttcgacctagctagggttagggatcgccggcatcgtcgtatgcgcctgttcgccttcgatccgtacgcttcaccctgcaaaccacgccgtactgtcgttgtcgacgccggcgccttggatttgttcattactcagcgccatcaatccagccacggcgtcttcagcggcaagttcgttggctgctcgccggccggcaacaggcattcggtaagggatggctcaggtgtttctttggagccgggtcattcggAaagggatggctcaggtgtttctttggagccagataccattcattctgcaggacatgtcgtatccactttaacccatgacctgcattcaacagcattgccgttgtctccacaaaccaaccaaggtaacatggaatacgaaacaacgacaactataggtgatgccaatattgctgaagacacatatgtaggtgaggagacagatcttgcagagaatggacaagatagtggtaacgagcatgattctgatgatgcccttaacaatagttcagatgatgatatttcagaaccacgtgttactcattctgtcaatgcctttcctttgatgcgtgcatctggacaagatgctataaaagcattcagtgatatatctgtactaaggaagacaacagcagatgagaatttctttggatgcaagaatcaatttgacaatccactagcagaagcaaagacttttgattcaaaagagcatctacagattgccataggtgagtttcatatcaataaaaattcagaaattaaatatagcacaagtagtcagtctaagcttatagctcagtgcacggatactagttgcatgtggaggctgtatgcaacaccgataggaataggctcatgttggatgataaggaaatgtccgtatgctcacacttgtagagcaccggctgatagatttgatcatgctcagttatcgtctgctatgattgctaatgtgatacgtgatgcattaagggatgacttggaattaagtataaaaaatgtgagatcactagtccagcagagatatagaaatgtgaagccatcttacaaagttggaatatacgaggtgaaggttgacaacgaattagtcccaatgcaacaaggaaaccatgtgttttacacacgcagagacttcaagtacaaggtagttttgcaacccaacatcccaccatcctgtgattgtttgaagccaaatctaaccggtgttccatgtgctcatgtattggcggtttgcaagcacagaaatcttagtgaaaatgaattgatcgttccgttctactcttctcaatcacttgcgaacacctgggtggggcaatttcatccttatggaaaccaaactgaatggccaccttttactggtccaataattgttcctgatcgtagactgataaatcttggccgtcgtcagcataacaggattccaatgtacatggatgaaatgcaaggaaggagacttagacaccaggcacgccgttccacaagagatagcgaccatagtgaattaggtagaaaccaatttgagtaa
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| Protein seq | MDALTNSVQIWKLFQTASIFLVQPDPQDATDTLREVSKQKLFDLARVRDRRHRRMRLFAFDPYASPCKPRRTVVVDAGALDLFITQRHQSSHGVFSGKFVGCSPAGNRHSVRDGSGVSLEPGHSERDGSGVSLEPDTIHSAGHVVSTLTHDLHSTALPLSPQTNQGNMEYETTTTIGDANIAEDTYVGEETDLAENGQDSGNEHDSDDALNNSSDDDISEPRVTHSVNAFPLMRASGQDAIKAFSDISVLRKTTADENFFGCKNQFDNPLAEAKTFDSKEHLQIAIGEFHINKNSEIKYSTSSQSKLIAQCTDTSCMWRLYATPIGIGSCWMIRKCPYAHTCRAPADRFDHAQLSSAMIANVIRDALRDDLELSIKNVRSLVQQRYRNVKPSYKVGIYEVKVDNELVPMQQGNHVFYTRRDFKYKVVLQPNIPPSCDCLKPNLTGVPCAHVLAVCKHRNLSENELIVPFYSSQSLANTWVGQFHPYGNQTEWPPFTGPIIVPDRRLINLGRRQHNRIPMYMDEMQGRRLRHQARRSTRDSDHSELGRNQFE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.715656 | 1.964970 | 1.530130 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008260 | RBH | 1.316493 | 1.012577 | 2.745976 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0010190 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008420 | RBH | 1.725189 | 0.942405 | 5.604936 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010160 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009650 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008290 | RBH | 0.807796 | 3.024149 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016170 | SBH | 0.0 | 0.0 | 0.0 |
