Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0005050 | OGI:12010020 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:3854751-3857682 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatgtacgcctgaaaaaaattgcactgcaaacaacaaatggattaactgaaattgccacacaaatgccaacaaaggtatatcaaccggctggtcacaacttcacaagtacaaaagaaaccatcggcaccatcatatcacatcacatcacatctagcttaattagttcaaagcagtacttgcaatttgacagaggcttaaaattagtactaagtgtcatcctcataaaggtagtagttagccatggattagtcaagcattgaatgcacatgagacatgaattaaggtagcactgaccaggcgatcatgaccgacatcctgcagaacccaagattgaatccacacctgcttctcaacgcatgcctaggcctgatgtccacctgttcgctgccaatctctgcagcctccacaccaaggatcaggcttcccttctcctccaccaccacgacgcgccgctgcagcacgacgagtgggccactgtcgtcatcgtcattgaccaccgccaccttgccgtcaccggagtcgagcagcaccacgtcttcatcgatgccagcggtgcgagcggtgagacgggccctgaaatcggttgagccttcgatgacacgaactgcgatggtggcctccacggcgaatatcaggtgtgcgaagacgaactccattgtggagtgctccgtcgactcgacggatctccgggcgaagccagtgttgttcatgtgagctacgccgtcgtagaagaaggcgttgtagcttagcaccttatcgtcctcttcagattcagacaacggcaagccactattgttgtgggtgatcaccttgaggtcaacctcgaacatgacagggttgatcagcacgacggcacggctagggccagtgagcgtcagagatgaatcctgtatatatacatgcataaacacacacataaatatatatgcacagtaagcaatatacagatcatgtctggattctgatcttacacattgatcttcagttcaaaaaatataagcaacaactatgatccaggatgcaaccccgaatttcagaccgataaaaccatactatctaagtattacctccattttaaaaaggatgctagactgataaaactaaatactccatgcgtttacaaatataaatactttggacttagacacggtttccaatgtgctactttgacctgtatctataaaaataaattattccaaataaaaagtcttatgataatttgtttaacgataaacctagcaacacctttcttacgtcatccatcattatgttctttttaacaatttagcagtcaaagctaaaaaggtttggtttggcgctgttctattctaaaagtgcttatattatatttatggatagagagaggagtaagctagtactagcataaatcataggaaagataaatatgtagaatgtgatgcttgcctgtggcgaggcgagggtctggcagttgtccctgtcgcggcggaagaggaagttcctcttgtgatccagcgagtcacggacagcaacgatgccgtagacacgcagtggccactcaaggtcgctccccttgatctctgtcaccttgactgaaaatatctgtagcacttccatcggccacgaggatatcggcagcacaggtccatcggtgtgctgcatgggcgggattgcagctgtaggcatatagatatagaatttgttgaatcattatgggaatggaatttcagtgttctaaaagtccactgtgattttgtgtttggatgtgcattaggcagctgtcctgtctggttatattgatataattctacttctttctttttggaaaaaaaataaggcttgctaattgcttggaaggagctagacaggtttgttataagagtttagccccctgtccttgcgtctagcacattctcgaaccatgtactccctccgtcccataatattaaaacctaggactggatgggacgtttcatagtacaacgaatctggacatgcatccagtcctagattgtaatattatgggacgaagggagtagtgaaattctgtcgtgtgacctcattcctcctgacacacatccagtgcagaccagggctttttgtgttgtgtgcgctcagattaacttgggccgtgtttagttgttttggctaaaaaattttgacgtatacggacacacttttgaagtactaaacgtagactaataacaaaacaaattacagattccgcctgtaaactgtgagacgaatctattaagtctaattaattcatcattagcaaatgtttactatagcaccacattgttaaatcatggcgtaattaggttcaaaagattcctctcgcaatttatatgcaaactgtgcaattgatttttctttccgtccgtccacatttaatgctccatgcatgcgtccaaacatttgatataacgaaaaagtttgaagtttaaagggaactaaacacagcctcgtagcagagttgtcaatgcctaataaaatttagcttactagtatgtccaaaaaaaagaagggaaaaaaaacagtttgcacatgagcaaaattggtggccatatcgttgacatcgaaatcttgcgcctgtaaagaaaTtttttttttgaaacgaacgcctgtaaagaaattgtttgggcttcttgtccttaagattaagatgatgagatgtgattggtgcgcaatgaagaagaactcactctcgtcctcaaaggatccgtcgtttttgccgtagttggtggcccaggtggtacggtaggagtcgaggaaattggagtcgtcgttgtagtagtcgttgtcctcgtcctcgtcttcttggcaggtggtggtggtgttgcggccgccctcctcgcgcgacctcttcgcgtctccgccggcggggatctcctcgtcggggccagcgatctggccgtggccggtcccgttccgacccgaatccacctccat
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| CDS seq | atggaggtggattcgggtcggaacgggaccggccacggccagatcgctggccccgacgaggagatccccgccggcggagacgcgaagaggtcgcgcgaggagggcggccgcaacaccaccaccacctgccaagaagacgaggacgaggacaacgactactacaacgacgactccaatttcctcgactcctaccgtaccacctgggccaccaactacggcaaaaacgacggatcctttgaggacgagactgcaatcccgcccatgcagcacaccgatggacctgtgctgccgatatcctcgtggccgatggaagtgctacagatattttcagtcaaggtgacagagatcaaggggagcgaccttgagtggccactgcgtgtctacggcatcgttgctgtccgtgactcgctggatcacaagaggaacttcctcttccgccgcgacagggacaactgccagaccctcgcctcgccacaggattcatctctgacgctcactggccctagccgtgccgtcgtgctgatcaaccctgtcatgttcgaggttgacctcaaggtgatcacccacaacaatagtggcttgccgttgtctgaatctgaagaggacgataaggtgctaagctacaacgccttcttctacgacggcgtagctcacatgaacaacactggcttcgcccggagatccgtcgagtcgacggagcactccacaatggagttcgtcttcgcacacctgatattcgccgtggaggccaccatcgcagttcgtgtcatcgaaggctcaaccgatttcagggcccgtctcaccgctcgcaccgctggcatcgatgaagacgtggtgctgctcgactccggtgacggcaaggtggcggtggtcaatgacgatgacgacagtggcccactcgtcgtgctgcagcggcgcgtcgtggtggtggaggagaagggaagcctgatccttggtgtggaggctgcagagattggcagcgaacaggtggacatcaggcctaggcatgcgttgagaagcaggtgtggattcaatcttgggttctgcaggatgtcggtcatgatcgcctggtcagtgctaccttaa
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| Protein seq | MEVDSGRNGTGHGQIAGPDEEIPAGGDAKRSREEGGRNTTTTCQEDEDEDNDYYNDDSNFLDSYRTTWATNYGKNDGSFEDETAIPPMQHTDGPVLPISSWPMEVLQIFSVKVTEIKGSDLEWPLRVYGIVAVRDSLDHKRNFLFRRDRDNCQTLASPQDSSLTLTGPSRAVVLINPVMFEVDLKVITHNNSGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFVFAHLIFAVEATIAVRVIEGSTDFRARLTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIGSEQVDIRPRHALRSRCGFNLGFCRMSVMIAWSVLP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0005050 | OsLaMu_12g0005050.01 | Chr12 | 3854751 | 3857682 | - | NAM | ||
| CDS seq | atggaggtggattcgggtcggaacgggaccggccacggccagatcgctggccccgacgaggagatccccgccggcggagacgcgaagaggtcgcgcgaggagggcggccgcaacaccaccaccacctgccaagaagacgaggacgaggacaacgactactacaacgacgactccaatttcctcgactcctaccgtaccacctgggccaccaactacggcaaaaacgacggatcctttgaggacgagactgcaatcccgcccatgcagcacaccgatggacctgtgctgccgatatcctcgtggccgatggaagtgctacagatattttcagtcaaggtgacagagatcaaggggagcgaccttgagtggccactgcgtgtctacggcatcgttgctgtccgtgactcgctggatcacaagaggaacttcctcttccgccgcgacagggacaactgccagaccctcgcctcgccacaggattcatctctgacgctcactggccctagccgtgccgtcgtgctgatcaaccctgtcatgttcgaggttgacctcaaggtgatcacccacaacaatagtggcttgccgttgtctgaatctgaagaggacgataaggtgctaagctacaacgccttcttctacgacggcgtagctcacatgaacaacactggcttcgcccggagatccgtcgagtcgacggagcactccacaatggagttcgtcttcgcacacctgatattcgccgtggaggccaccatcgcagttcgtgtcatcgaaggctcaaccgatttcagggcccgtctcaccgctcgcaccgctggcatcgatgaagacgtggtgctgctcgactccggtgacggcaaggtggcggtggtcaatgacgatgacgacagtggcccactcgtcgtgctgcagcggcgcgtcgtggtggtggaggagaagggaagcctgatccttggtgtggaggctgcagagattggcagcgaacaggtggacatcaggcctaggcatgcgttgagaagcaggtgtggattcaatcttgggttctgcaggatgtcggtcatgatcgcctggtcagtgctaccttaa
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| Protein seq | MEVDSGRNGTGHGQIAGPDEEIPAGGDAKRSREEGGRNTTTTCQEDEDEDNDYYNDDSNFLDSYRTTWATNYGKNDGSFEDETAIPPMQHTDGPVLPISSWPMEVLQIFSVKVTEIKGSDLEWPLRVYGIVAVRDSLDHKRNFLFRRDRDNCQTLASPQDSSLTLTGPSRAVVLINPVMFEVDLKVITHNNSGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFVFAHLIFAVEATIAVRVIEGSTDFRARLTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIGSEQVDIRPRHALRSRCGFNLGFCRMSVMIAWSVLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0173400 | RBH | 2.203531 | 3.945253 | 4.559412 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07500 | RBH | 1.459606 | 2.628844 | 1.149631 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0173400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004900 | RBH | 0.257419 | 9.772388 | 4.402084 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005120 | RBH | 0.0 | 0.0 | 0.472922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005150 | RBH | 3.182963 | 6.915540 | 5.409173 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004980 | RBH | 0.240138 | 0.319578 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005110 | RBH | 0.0 | 0.0 | 0.820578 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0063200 | RBH | 0.2106755 | 0.2781945 | 0.102496 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005090 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0067400 | RBH | 0.246459 | 0.757906 | 0.136496 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004900 | RBH | 0.108296 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005080 | RBH | 0.0 | 0.0 | 0.249675 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004920 | RBH | 0.0 | 0.0 | 0.263432 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005120 | RBH | 0.0 | 0.0 | 0.000000 |
