Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os12g07500 OGI:12010020 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr12:3723611-3726842
Gene Symbol -
DNA seq

AATGTACGCCTGAAAAAAATTGCACTGCAAACAACAAATGGATTAACTGAAATTGCCACACAAATGCCAACAAAGGTATATCAACCGGCTGGTCACAACTTCACAAGTACAAAAGAAACCATCGGCACCATCACATCACATCACATCTAGCTTAATTAGTTCAAAGCAGTACTTGCAATTTGACAGAGGCTTAAAATTAGTACTAAGTGTCATCCTCATAAAGGTAGTAGTTAGCCATGGATTAGTCAAGCATTGAATGCACATGAGACATGAATTAAGGTAGCACTGACCAGGCGATCATGACCGACATCCTGCAGAACCCAAGATTGAATCCACACCTGCTTCTCAACGCATGCCTAGGCCTGATGTCCACCTGTCTCGTCACAATCTCTTCGCTGCCAATCTCTGCAGCCTCCACACCAAGGATCAGGCTTCCCTTCTCCTCCACCACCACGACGCGCCGCTGCAGCACGACGAGTGGGCCACTGTCGTCATCGTCATTGACCACCGCCACCTTGCCGTCACCGGAGTCGAGCAGCACCACGTCTTCATCGATGCCAGCGGTGCGAGCGGTGAGACGGGCCCTGAAATCGGTTGAGCCTTCGATGACACGAACTGCGATGGTGGCCTCCACGGCGAATATCAGGTGTGCGAAGACGAACTCCATTGTGGAGTGCTCCGTCGACTCGACGGATCTCCGGGCGAAGCCAGTGTTGTTCATGTGAGCTACGCCGTCGTAGAAGAAGGCGTTGTAGCTTAGCACCTTATCGTCCTCTTCAGATTCAGACAACGGCAAGCCACTATTGTTGTGGGTGATCACCTTGAGGTCAACCTCGAACATGACAGGGTTGATCAGCACGACGGCACGGCTAGGGCCAGTGAGCGTCAGAGATGAATCCTGTATATATACATGCATAAACACACATAAATATATATGCACAGTAAGCAATATACAGATCATGTCTGGATTCTGATCTTACACATTGATCTTCAGTTCAAAAAATATAAGCAACAACTGTGATCCAGGATGCAAACCCCGAATTTCAGACCGATAAAACCATACTAACTATTACCTCCATTTTAAAAAGGATGCCAGACTGATAAAACTAAATACTCCATGCGTTTACAAATATAAATACTTTGGACTTAGACACGGTTTCCAATGTGCTACTTTGACCTGTATCTATAAAAATAAATTATTCCAAATAAAAAGAGTCTTATGATAATTTGTTTAACGATAAACCTAGCAACATCTTTCTTACGTGATCCATCATTATGTTCTCTTTAACAATTTGGCAGTCAAAACTAAAAAGGTTTGGCTTGTTCTAAAAGTGCTTATATTTATGATCAAAGAGAGGAGTAAGCTAGTACTAGTATAAATCATGGGAAAGATAAATACGTTGAATGTGATGCTTGCCTGTGGCGAGGTGAGGGTCTGGCAGTCGTCCCTGTCGCGGCGGAAGAGGACGTTCCTCTTGTGATCCAGCGAGTCACGGACAGCAACGATGCCGTAGACACGCAGTGGCCACTCAAGGTTCCCCATGACCTCTGTCACCTTGACTGAAAATATTTGTAGCACGTCCATTGGCCACGAGGATATCGGCAGCACAGGTCCATCAGTGTGCTGCATGGGCCGGATTGCAGCTGTAGGCATATAGATATAGCACTAGTTGAATCATTATTGAATACATGGAATGGAATTTCAGTGTTCTAAAAGTCCACTGTGATTTTGTGTTTGAATGTGCACTAGGCAGCTGTCCTGTCTGGTTATATTGATATAATTCTACTTTCTTTTTGGAAAAAAGAAGGCTTGTTAATTGCTTGGAAAGCGCTAGACAGGTTTGTTATAAGAGTTTAGCCCTATGGACCACCTTGCGTCTAGCACCTTCTCGAACCATGTGGAATTTCATAGTGAAATTCTGTCGTGCGACCTCATTCCTCCTGACACATCCAGTGCAGACCAGGACTGTTTGTGTACGCTCAGATTAACTTACAGCAGAGTGGTCAATGGTGGTGTTTGAATCTCCTGAAGATGAATATTAAATTTTTCACGCAAAACGAGGTGGTAATAACGTGTGATTAATTGAGTTTTAATTATTTCAAACTTGAAAAATGTATTAATCTGATATTTTAGAACAACTTTTATATAGAAAGTTTTCGCACGAAACGCACCGTTTAGCAGTTTGAAAAGCGTGTCACGAATATCTAAAACTTAATCCACTTTTTTAAGTGGAAACGAACGGAGCCATTTGCCTAATAAAATTTAGAGTGAATTACGCTTTGGGCCACATTTTATTACCTAAGTTTCACTTTGAACCACCCTTAAACATATATTTTCACTTTGGACCAGATGACTTTGCCATTATTGCGATTTGGACCACCATGAACGATTTTTTTTTCAGTACAATCAGCGACCTTAAACACATCAGCTTTAGTACACGGCCGAACTCCTCTATGTATAGCTCATATGTTTGCCGAAAGGGAAGTTAGACATGATGAGAAAAAGTTGTTTATGGTAGTCCAAACCGCAACAATGGTAAATTTACCCGGTCCAAATTAAAAAGATAGGTTTAAGGGTGGTCCAAATTGAAACTTAGGTAATAAAAGGTGGACCAAAGTACAATTTACTTTAAAATTTATCTTACTAGTATGCCCAAAAAAGAAGGGAAAAAAAACTAGTTTGCACATGAGCAAATTGATGGCCATATATCGAAATCTTGTCCTTAAGATTAAGATGACGCCTGTAAAGAAATTGTTTGGGCTTCTTGTCCTTAAGATTGTCCTTAAGATTAAGATGATGAGATGTGATTGGTGCGCAATGAATTGTCCTTAAGATTAAGATGATGAGATGTGATTGGTGCGCAATGAAGAAGAAGAAGTGGGGGTTACTCACTCTCGTCCTCAAAGGAGGATCCGTCGTTTTTGCCGTAGTTGGTGGCCCAGGTGGTACGGTAGGAGTCGAGGAAATTGGAGTCGTCGTTGTAGTAGTCGTTGTCCTCGTCCTCGTCTTCTTGGCAGGTGGTGGTGGTGTTGCGGCCGCCCTCCTCGCGCGACCTCTTCGCGTCTCCGCCGGCGGGGATCTCCTCGTCGGGGCCAGCGATCTGGCCGTGGCCGGTCCCGTTCCGACCCGAATCCACCTCCATCCCCTGTCGCTCGCCTCGCCGCCAAGATCGATCGCTAGGGTTTTTTCTTTTTTCTTTTTCTTTCCCCGGATAAGAAAGCTAGGGCTTTT

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CDS seq

ATGGAGGTGGATTCGGGTCGGAACGGGACCGGCCACGGCCAGATCGCTGGCCCCGACGAGGAGATCCCCGCCGGCGGAGACGCGAAGAGGTCGCGCGAGGAGGGCGGCCGCAACACCACCACCACCTGCCAAGAAGACGAGGACGAGGACAACGACTACTACAACGACGACTCCAATTTCCTCGACTCCTACCGTACCACCTGGGCCACCAACTACGGCAAAAACGACGGATCCTCCTTTGAGGACGAGACTGCAATCCGGCCCATGCAGCACACTGATGGACCTGTGCTGCCGATATCCTCGTGGCCAATGGACGTGCTACAAATATTTTCAGTCAAGGTGACAGAGGTCATGGGGAACCTTGAGTGGCCACTGCGTGTCTACGGCATCGTTGCTGTCCGTGACTCGCTGGATCACAAGAGGAACGTCCTCTTCCGCCGCGACAGGGACGACTGCCAGACCCTCACCTCGCCACAGGATTCATCTCTGACGCTCACTGGCCCTAGCCGTGCCGTCGTGCTGATCAACCCTGTCATGTTCGAGGTTGACCTCAAGGTGATCACCCACAACAATAGTGGCTTGCCGTTGTCTGAATCTGAAGAGGACGATAAGGTGCTAAGCTACAACGCCTTCTTCTACGACGGCGTAGCTCACATGAACAACACTGGCTTCGCCCGGAGATCCGTCGAGTCGACGGAGCACTCCACAATGGAGTTCGTCTTCGCACACCTGATATTCGCCGTGGAGGCCACCATCGCAGTTCGTGTCATCGAAGGCTCAACCGATTTCAGGGCCCGTCTCACCGCTCGCACCGCTGGCATCGATGAAGACGTGGTGCTGCTCGACTCCGGTGACGGCAAGGTGGCGGTGGTCAATGACGATGACGACAGTGGCCCACTCGTCGTGCTGCAGCGGCGCGTCGTGGTGGTGGAGGAGAAGGGAAGCCTGATCCTTGGTGTGGAGGCTGCAGAGATTGGCAGCGAAGAGATTGTGACGAGACAGGTGGACATCAGGCCTAGGCATGCGTTGAGAAGCAGGTGTGGATTCAATCTTGGGTTCTGCAGGATGTCGGTCATGATCGCCTGGTCAGTGCTACCTTAA

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Protein seq

MEVDSGRNGTGHGQIAGPDEEIPAGGDAKRSREEGGRNTTTTCQEDEDEDNDYYNDDSNFLDSYRTTWATNYGKNDGSSFEDETAIRPMQHTDGPVLPISSWPMDVLQIFSVKVTEVMGNLEWPLRVYGIVAVRDSLDHKRNVLFRRDRDDCQTLTSPQDSSLTLTGPSRAVVLINPVMFEVDLKVITHNNSGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFVFAHLIFAVEATIAVRVIEGSTDFRARLTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIGSEEIVTRQVDIRPRHALRSRCGFNLGFCRMSVMIAWSVLP

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os12g07500 LOC_Os12g07500.1 Chr12 3723611 3726842 - MSU_osa1r7
CDS seq

ATGGAGGTGGATTCGGGTCGGAACGGGACCGGCCACGGCCAGATCGCTGGCCCCGACGAGGAGATCCCCGCCGGCGGAGACGCGAAGAGGTCGCGCGAGGAGGGCGGCCGCAACACCACCACCACCTGCCAAGAAGACGAGGACGAGGACAACGACTACTACAACGACGACTCCAATTTCCTCGACTCCTACCGTACCACCTGGGCCACCAACTACGGCAAAAACGACGGATCCTCCTTTGAGGACGAGACTGCAATCCGGCCCATGCAGCACACTGATGGACCTGTGCTGCCGATATCCTCGTGGCCAATGGACGTGCTACAAATATTTTCAGTCAAGGTGACAGAGGTCATGGGGAACCTTGAGTGGCCACTGCGTGTCTACGGCATCGTTGCTGTCCGTGACTCGCTGGATCACAAGAGGAACGTCCTCTTCCGCCGCGACAGGGACGACTGCCAGACCCTCACCTCGCCACAGGATTCATCTCTGACGCTCACTGGCCCTAGCCGTGCCGTCGTGCTGATCAACCCTGTCATGTTCGAGGTTGACCTCAAGGTGATCACCCACAACAATAGTGGCTTGCCGTTGTCTGAATCTGAAGAGGACGATAAGGTGCTAAGCTACAACGCCTTCTTCTACGACGGCGTAGCTCACATGAACAACACTGGCTTCGCCCGGAGATCCGTCGAGTCGACGGAGCACTCCACAATGGAGTTCGTCTTCGCACACCTGATATTCGCCGTGGAGGCCACCATCGCAGTTCGTGTCATCGAAGGCTCAACCGATTTCAGGGCCCGTCTCACCGCTCGCACCGCTGGCATCGATGAAGACGTGGTGCTGCTCGACTCCGGTGACGGCAAGGTGGCGGTGGTCAATGACGATGACGACAGTGGCCCACTCGTCGTGCTGCAGCGGCGCGTCGTGGTGGTGGAGGAGAAGGGAAGCCTGATCCTTGGTGTGGAGGCTGCAGAGATTGGCAGCGAAGAGATTGTGACGAGACAGGTGGACATCAGGCCTAGGCATGCGTTGAGAAGCAGGTGTGGATTCAATCTTGGGTTCTGCAGGATGTCGGTCATGATCGCCTGGTCAGTGCTACCTTAA

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Protein seq

MEVDSGRNGTGHGQIAGPDEEIPAGGDAKRSREEGGRNTTTTCQEDEDEDNDYYNDDSNFLDSYRTTWATNYGKNDGSSFEDETAIRPMQHTDGPVLPISSWPMDVLQIFSVKVTEVMGNLEWPLRVYGIVAVRDSLDHKRNVLFRRDRDDCQTLTSPQDSSLTLTGPSRAVVLINPVMFEVDLKVITHNNSGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFVFAHLIFAVEATIAVRVIEGSTDFRARLTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIGSEEIVTRQVDIRPRHALRSRCGFNLGFCRMSVMIAWSVLP

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 1.459606 2.628844 1.149631

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0173400 RBH 2.203531 3.945253 4.559412
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os12g0173400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0004900 RBH 0.257419 9.772388 4.402084
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0005120 RBH 0.0 0.0 0.472922
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0005150 RBH 3.182963 6.915540 5.409173
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0004980 RBH 0.240138 0.319578 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0005110 RBH 0.0 0.0 0.820578
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0063200 RBH 0.2106755 0.2781945 0.102496
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0005090 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0067400 RBH 0.246459 0.757906 0.136496
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0004900 RBH 0.108296 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0005160 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0005110 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0005080 RBH 0.0 0.0 0.249675
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0005050 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G004920 RBH 0.0 0.0 0.263432
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0005120 RBH 0.0 0.0 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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