Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0000660 | OGI:12001100 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:518035-521418 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attcttgaagaagaagatgaggaggaggatgttaattgggacgaggatgatactgttgacaattttgatagggctacttactctgatggttctggtgatgaggtatgcacatgactccctccttggtcattatatatttatatcagatacttgtgtctatttctcgaccaatttacctgatcatgatcaaacctttgttatacttgtttcatgccaagcacacattcccttttagtgcttgtctaaatgatctattggtccaataaattggaaggttttgtgacttaagttatgtttcacttttatttagtaaactagtgtacatgcttacctgtactgcaatactatagtttttttgggttatctataaaacagtacctgttcctgtagggttgttaaaggagctttgttgatcctgctcttacttctatgtttctttagctggcatttttgtatggtgcctttatagtgagggagagttagcagaactactacaggaccatcaaagaaatgatcatatacttctacaaggtcgtattcaaaccaagcaatgatgaaagatagtctactggatgcctataattgaatggttgcaagttaagaccactagacagaacaatgataaccactggctacatctgaacacataatagacaacaaaaaatagaactgaaatgatgcctatgagagcttaggtaatctgtgctgggcatttatccatgtgttgatgattgataagctgtactccccctcctttttgtggcctaacaggctttcttgtttcaccattttttgaatagttttactactttttcattacatatttagtatgagtttcctctaactttaatcctcaaaataagttcctctatagtgtggtagtatctgtttgcatggagttgtaagacgcaacaacaaatttgacacagaaggataatcgtatattttgttgcagtaaatttgggttttacaaatggtacatgcatatatgtgatgcctgcattagttgctttgttgggaggttatttcagactgcaattcatgagtgagatgtagcaaatgttttcagtctgcttgtaatgtgctttgttgcaggactttttacaagagatgtccgagaaagatgagaaaatcaagtccttagtcagcatgggttttcctgaagatgaagcaatgagggctattactagatgcggtatacctctattgaagttgctgctttgacagtaaggagccttatactgcctatgctgggttaaattttggcaggtctggatgcgtctgtagatttgttggttgagtcaatctatgcaccagcatctgcaggaaatgtttattttacaaacttatctgactatgaggtatgggtaccttgtgattatagagcatctgaatgatgaaattgttttcatttctttaatgtaatgccactggcataatgtttacttttgtgcaggatacagagttcagttcctttggaggaagaaagaaaacaaaattaatagatggaaccaagaaaaaaagagaacggtatagaagtagaccacaatggaatcaagtgccatttgacggcagccatgaagagccaatgcctcttccaaatccaatggtgggattcagcttgcccaatgacgggttaaggtcagtccacagaaaccttcctgaccatgctcttggaccaccattcttttactatgaaaacgtggccctagcaccaaaaggtgtatggacgaccatctcaaggttcttgtatgacatttatcctgagttcgtagattccaaatacttctgtgctgctgctaggaagaggggttacatccataacttgccgattgagaacaggtcacctgttcttcccattcccccaaagacaatatctgaagcctttccttctactaagatgtggtggccctcttgggatccaagaaggcagttcaactgcttgcaaacttatgtggcaagcgcaaagcatacagaacggatacgatgtgctcttggtagattcggtgatgcactacctccaacagttcagaagagtgttttggaagaatgtaggaagtggaaccttgtctgggttggaaagaacaaggttgctactctagagcctgatgagatggaattcctattgggataccctaggaatcataccaggggagttagcaggaagcgagatatagagctcttgggaattcattccaagttgatacagttgcataccacctctctgtgctgagggacattttccctaatggcatgaatgtcttgtccttgttttctggtattggtggagcagaaatagctctccacaagcttgggatccgtatgaagacagtggtctcagtcgaaatatcagaggtaaacatggcgttgctgaggagttggtgggaccagacccaaactggcatgctgattgaaatcgcagatgttcaaaatcttactgctaaaagaattgaactattcatcagaagatttggtggctttgacctggcgatcgggggcagcccgtgcaacaacctcgctggtagcaacagatatcaccgtgatggcttggagggcaagcactcagcactattctatcactactacagaatcttggattctgtaaagactattatggctaggatgtaagctagcccattaacgaactctctgaattattgttgctaatgaaattggaacctgatggttgatcttctttcacaaggtttctcttgccatggctcaatacgttctactaatttaccccaagtgcaaaatgttccttccactttgataatgcttgcagttctggtgcgaaaggtatgaaaattacatctggcagcatgtctctcatttttgtactactattatgtatacaaactgaagattgccatggaggaataggctaatgctattaaggggctttgtttgattactacaagctgaattatgaacatgatttgagcaccatacactagattcatctctgcttttgctgaagttgaaattctgcaacctgaattgtacctgcatttctataataacctttatttattttgactgtgcctgaatgtctatagcttgcacctccaatgcaagtacatttccctttttcctgttgatctgcacaattcactcgatatatctttactataacaaaatcttgaatctttgaaggaaagttgtttctccatgtttgcaaggcccttccgatgaaacaatcctcctccttgacactgaaaactgaacaagatccttccaataatagtgataaggattccctggacaaataagactgcacctcattcagtgatacaagcgatgagaagcaattgttatccacctgaaagaacatgtatgtcgacatttgagggtgtggacgaggagctgaggcaacattcttga
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| CDS seq | atgtccgagaaagatgagaaaatcaagtccttagtcagcatgggttttcctgaagatgaagcaatgagggctattactagatgcggtctggatgcgtctgtagatttgttggttgagtcaatctatgcaccagcatctgcaggaaatgtttattttacaaacttatctgactatgaggatacagagttcagttcctttggaggaagaaagaaaacaaaattaatagatggaaccaagaaaaaaagagaacggtatagaagtagaccacaatggaatcaagtgccatttgacggcagccatgaagagccaatgcctcttccaaatccaatggtgggattcagcttgcccaatgacgggttaaggtcagtccacagaaaccttcctgaccatgctcttggaccaccattcttttactatgaaaacgtggccctagcaccaaaaggtgtatggacgaccatctcaaggttcttgtatgacatttatcctgagttcgtagattccaaatacttctgtgctgctgctaggaagaggggttacatccataacttgccgattgagaacagattcggtgatgcactacctccaacagttcagaagagtgttttggaagaatgtaggaagtggaaccttgtctgggttggaaagaacaaggaagcgagatatagagctcttgggaattcattccaagttgatacagttgcataccacctctctgtgctgagggacattttccctaatggcatgaatgtcttgtccttgttttctggtattggtggagcagaaatagctctccacaagcttgggatccgtatgaagacagtggtctcagtcgaaatatcagaggtaaacatggcgttgctgaggagttggtgggaccagacccaaactggcatgctgattgaaatcgcagatgttcaaaatcttactgctaaaagaattgaactattcatcagaagatttggtggctttgacctggcgatcgggggcagcccgtgcaacaacctcgctggtagcaacagatatcaccgtgatggcttggagggcaagcactcagcactattctatcactactacagaatcttggattctgtaaagactattatggctaggatttctggtgcgaaagtgatacaagcgatgagaagcaattgttatccacctgaaagaacatgtatgtcgacatttgagggtgtggacgaggagctgaggcaacattcttga
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| Protein seq | MSEKDEKIKSLVSMGFPEDEAMRAITRCGLDASVDLLVESIYAPASAGNVYFTNLSDYEDTEFSSFGGRKKTKLIDGTKKKRERYRSRPQWNQVPFDGSHEEPMPLPNPMVGFSLPNDGLRSVHRNLPDHALGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVDSKYFCAAARKRGYIHNLPIENRFGDALPPTVQKSVLEECRKWNLVWVGKNKEARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEIALHKLGIRMKTVVSVEISEVNMALLRSWWDQTQTGMLIEIADVQNLTAKRIELFIRRFGGFDLAIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMARISGAKVIQAMRSNCYPPERTCMSTFEGVDEELRQHS |
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| Function | DNA (cytosine-5)-methyltransferase DRM2 [UniProtKB/Swiss-Prot:Q10SU5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0000660 | OsLaMu_12g0000660.01 | Chr12 | 518035 | 521418 | + | NAM | ||
| CDS seq | atgtccgagaaagatgagaaaatcaagtccttagtcagcatgggttttcctgaagatgaagcaatgagggctattactagatgcggtctggatgcgtctgtagatttgttggttgagtcaatctatgcaccagcatctgcaggaaatgtttattttacaaacttatctgactatgaggatacagagttcagttcctttggaggaagaaagaaaacaaaattaatagatggaaccaagaaaaaaagagaacggtatagaagtagaccacaatggaatcaagtgccatttgacggcagccatgaagagccaatgcctcttccaaatccaatggtgggattcagcttgcccaatgacgggttaaggtcagtccacagaaaccttcctgaccatgctcttggaccaccattcttttactatgaaaacgtggccctagcaccaaaaggtgtatggacgaccatctcaaggttcttgtatgacatttatcctgagttcgtagattccaaatacttctgtgctgctgctaggaagaggggttacatccataacttgccgattgagaacagattcggtgatgcactacctccaacagttcagaagagtgttttggaagaatgtaggaagtggaaccttgtctgggttggaaagaacaaggaagcgagatatagagctcttgggaattcattccaagttgatacagttgcataccacctctctgtgctgagggacattttccctaatggcatgaatgtcttgtccttgttttctggtattggtggagcagaaatagctctccacaagcttgggatccgtatgaagacagtggtctcagtcgaaatatcagaggtaaacatggcgttgctgaggagttggtgggaccagacccaaactggcatgctgattgaaatcgcagatgttcaaaatcttactgctaaaagaattgaactattcatcagaagatttggtggctttgacctggcgatcgggggcagcccgtgcaacaacctcgctggtagcaacagatatcaccgtgatggcttggagggcaagcactcagcactattctatcactactacagaatcttggattctgtaaagactattatggctaggatttctggtgcgaaagtgatacaagcgatgagaagcaattgttatccacctgaaagaacatgtatgtcgacatttgagggtgtggacgaggagctgaggcaacattcttga
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| Protein seq | MSEKDEKIKSLVSMGFPEDEAMRAITRCGLDASVDLLVESIYAPASAGNVYFTNLSDYEDTEFSSFGGRKKTKLIDGTKKKRERYRSRPQWNQVPFDGSHEEPMPLPNPMVGFSLPNDGLRSVHRNLPDHALGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVDSKYFCAAARKRGYIHNLPIENRFGDALPPTVQKSVLEECRKWNLVWVGKNKEARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEIALHKLGIRMKTVVSVEISEVNMALLRSWWDQTQTGMLIEIADVQNLTAKRIELFIRRFGGFDLAIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMARISGAKVIQAMRSNCYPPERTCMSTFEGVDEELRQHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0108966 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01810 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0108966 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000520 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000710 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000680 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000660 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0008200 | SBH | 0 | 0 | 0.0035705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000650 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0009400 | RBH | 0 | 0 | 0.0045995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000530 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000630 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000640 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000680 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000550 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000710 | RBH | 0.0 | 0.0 | 0.0 |
