Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0000600 | OGI:11001480 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:472745-477311 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtcgcacacaacacaaactgaaagtcaatttttctttcatttgcctctttatactcttagagtatacagaaaatatgaaaaagttatttcattggtttcttcatgcacttcctcacaccagcaaccataccagccactagcttctaaataatagcttttatgctctcatgtgcatccttcaactatctatcacacacaaactactgtacatgtatcacacaccagcactgtacatgtttcaagaaatatacaaatatgtgtaacagcaatggccgctcccccagcctcccagggaacaaaaaaattgatcaggtgaagagaaataataaaagagaaacaaaacaattgaccaattcattatgtattgagagcatcgcaggtaactccataacttccactctagtatgcttttcacttttcacttggggggaaatgatcgattcttataccgaggtggcctcatctcattttcaggggcatcactcttgccgctgctgctcttgcctcttaatggctcggtttctgaattattagagatgtggttctgtcgttgtcttctttcctgcaaatcagttgacaagtgtttaattcatgaggcaatgatataataaatccatgatttcattatgataaacattaataccacgttatgcaatgctctctatgtctgataatgctgataagacaggtatacatgatataatcaaataagattgctcacgtggtccatatgtcactaattttactgagatgaactttggatgtacttataacacaatatagcagatatgcatgatttccaggtaaatcactaatcgtactctttaggtaaaggaagagtttacagctacagcatttgcatctgatatgcacacagctatatgaatatgtcacttatcatatgtatatttttgtcacgaatcaaacctcttgaggaatgggttcattagagtccaacatccggaccacctggtccatccttggtctcttctcagaattcaaatcgatgcacctcagagctgtcaaaagggcacgtttgagctcctttgtcgatggtcttctctccaggtttggatcaacaacttcttctgatcgtctgttggcaaccatcattttaagccagtcaactaggtttacctacaaatgatcagtagtgtgttacagtatttgtcaaatcataagttcatagcttctcgattgcttcataagtgattgtagactgtagttgcatgcttttatgtaataacttggtaccgaacaatacaggaaatcgatgtcaacaggtattacctcatctggagggcgatcatagtcaatgggatctctacctgtaatagcttccagcagaaccaccccaaaactgtagacatcactcttttcattcaaaagtccactgttagcatactcgggcgcaacatagctgcaaaataataacacaattgttgagtaccattagtgaatagcaccaacagaatttttctgaaattacagtggctaagatttgaacataatacaaagagaacatgcctcaattcattatacaaaggcatgaaaaacttacccaaaagtacccataactcgagtagcaatatgacttttaccagcacctagcatcttggccaaaccaaagtcagatattttggcgttaaactcatcatcaatcaatatattactggccttgatatcacgatgcacaacttttggttcaattgcctcatgtaagtaagcaaggctgcaaatgtggtggttcttaccaaattagtatttgccaagcaataagatgatacaatctatacttgatttatattcatgatagtatagacaacgactacttgtgcatagtagtgactagtaagcctaaaatcacaaagctgtcaagattgtaacatgcacaacaatttttaatagagcagctatcaagattgaatgtgcttgtgtgaatcaatcagaaggcgacatttttagttctaaggcatttaatggaatagatagagacccaataagttcacagttcgcaccaagcaaaatcacaaatacaatgttgacagcaaacaattgatctagaatgggcatttgaatccacaagaagcaatagtttagactcagtgaaggagttactcacgcctttgcagtacccaaaagaattttcatgcgcgctagccaagtgagagaactatattgggataactctccatgtaaccaactttcaagattcccattgttgacatactcatacacaagcatcctgattatccacacacaacaaacaatttcagttaagatacaacaggtcataatctaagcaatgagtcctaataatacccatacctttgagtgccttcaacacagtaccccaaaaggcgaaccaaattcttgtgtcggacatgaccaattgcttcaacttccactctgaattctctctcagcttgtcctctgcacagggcaagtagtcatagcttaagtaaaaggaaggacaacaaactgacccatgcactgccactgcatcaccaaagaattgttataagaaaaaatggaaaatactcacagattgttaaggatttttttgacagccactggggtgccatttgataatctgccacggtagacaacaccatacccaccctcaccaattacattatcctttgaaaaacagttggttgcaagttccagatccctgagagtgaaccaatgaccccagccaaggtaagagaactcaggtaagcctggcaagggaacagagtcggcgggagcatgcgaggaagactgttcacatgtggaaacagattgaattccatcatagttgtccacataatgaagaggaacagaagaactgttatcttctccttgtatcgtcttgtcctcttgagcaaactgattcacatctttatccactggttcaacaggttcattctgaatggcgagtagaagtccatcatgtacaacgaaatcattgggcaaaaattcctccactgccctcacttccttgatatctttggatgcagaaggtatttgggtaattggaatttccttgaatgtcctacgtgaccgtttgatccaagtttgtatggtgaggcatacaataaggatgagaagaacaccaagtagggatgctccaacagatatcccaattacaacccaaagtttcaggccaaaaacaattgttctctcatgaagagagtctgttagagtggagtttgacgacatcttcggatcatcaagtacctaaatggggaagataagaacatgtcactcacaaatgcaaatcaccatttccctcaaacataaaaaaagagtgcatttctgcaagaccatataacacatataatatatgattctgatagaccatgacagtaaagtagaaagaaatcatcaaaaagagttacatacatataagcttgctagccgatcaaatgttcttaggattgccacaaagacaaaggcatggaaatttaacagaatggtcaggaacactacaactcgttgagtcggcaacactagtggtcatgagaaagctacatggtagcaaccagataatgaccatgagttcaagacaacacatcgccatttggacagtatcaattatcaatgaagcagctctgacctgtcaactaccgttcccacttattgttcagaatcgaacagctacaggttgacataattaattgagttataaacacaagcccttaagatagatgattacaggcgtttgaagatgtaagttaaattttccactagatcttaccaagggaaaaaaatactagtaaatatgggctaccattgcaacagttggaaagatagaatatttacagaggcagtcaacttggagtggatgacaagaaagaaagaaagagtaaccaacctttattggatacaatggtgaggaaccagaaattggccttcaagaagtgaatacggtagtgaatgctgaagagcgacctgaatccagagccatggggagtggcaggcagaggggaaacctgtagatcagaggaaagggtatccacgcaaatctgagggtaggggggaatgggaatgagaggaagaagaaagcaaatgtggacgcatacctgagcgagatccagacgcaggaagaagagaaagcttgcactttggagattgcttgcttggtgcaggactgcaggtgaggtaggggtgataagaagacgacgatagtggtggagtgtggcagcagcggcggcaggaggagaggagttatcatgtgaggtcggtaggtgatgggagtgatggagaagaaaccaaccttattacgctttctttttttttcctcccgaggattagacttgcactgcaaaaacaattccaagatttgggttcggttcctatggattcaatcacaaggaaccagtcacagcgaaatctgcgacggaagaatggggacgacggcggcgagcttggtttccctgagactgctcgcctccgcttgaggccgccaccttgcagctgctgcctgctcccactgccgcctggcggaggctgcggcgccgtccgtttgctggagtctctgccgacggcttccctgctggagctcgcgcagtcgctctgtctg
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| CDS seq | atgtcgtcaaactccactctaacagactctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatccttattgtatgcctcaccatacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggaggaatttttgcccaatgatttcgttgtacatgatggacttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagataacagttcttctgttcctcttcattatgtggacaactatgatggaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgccgactctgttcccttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtgggtatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaatccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaaggatgcttgtgtatgagtatgtcaacaatgggaatcttgaaagttggttacatggagagttatcccaatatagttctctcacttggctagcgcgcatgaaaattcttttgggtactgcaaaggcccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgttgcgcccgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctccagatgaggtaatacctgttgacatcgatttcctgtattgttcggtaaacctagttgactggcttaaaatgatggttgccaacagacgatcagaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaattctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacgacagaaccacatctctaataattcagaaaccgagccattaagaggcaagagcagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtga
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| Protein seq | MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTIQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVEEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEDNSSSVPLHYVDNYDGIQSVSTCEQSSSHAPADSVPLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPPDEVIPVDIDFLYCSVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNSEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK |
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| Function | Probable receptor-like protein kinase At5g18500 [UniProtKB/Swiss-Prot:Q8LEB6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0000600 | OsLaMu_12g0000600.02 | Chr12 | 472745 | 476928 | - | NAM | ||
| CDS seq | atgtcgtcaaactccactctaacagactctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatccttattgtatgcctcaccatacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggaggaatttttgcccaatgatttcgttgtacatgatggacttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagataacagttcttctgttcctcttcattatgtggacaactatgatggaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgccgactctgttcccttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtgggtatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaatccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaaggatgcttgtgtatgagtatgtcaacaatgggaatcttgaaagttggttacatggagagttatcccaatatagttctctcacttggctagcgcgcatgaaaattcttttgggtactgcaaaggcccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgttgcgcccgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctccagatgaggtaatacctgttgacatcgatttcctgtattgttcggtaaacctagttgactggcttaaaatgatggttgccaacagacgatcagaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaattctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacgacagaaccacatctctaataattcagaaaccgagccattaagaggcaagagcagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtga
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| Protein seq | MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTIQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVEEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEDNSSSVPLHYVDNYDGIQSVSTCEQSSSHAPADSVPLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPPDEVIPVDIDFLYCSVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNSEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0000600 | OsLaMu_12g0000600.01 | Chr12 | 472745 | 477311 | - | NAM | ||
| CDS seq | atgtcgtcaaactccactctaacagactctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatccttattgtatgcctcaccatacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggaggaatttttgcccaatgatttcgttgtacatgatggacttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagataacagttcttctgttcctcttcattatgtggacaactatgatggaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgccgactctgttcccttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtgggtatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaatccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaaggatgcttgtgtatgagtatgtcaacaatgggaatcttgaaagttggttacatggagagttatcccaatatagttctctcacttggctagcgcgcatgaaaattcttttgggtactgcaaaggcccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgttgcgcccgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctccagatgaggtaatacctgttgacatcgatttcctgtattgttcggtaaacctagttgactggcttaaaatgatggttgccaacagacgatcagaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaattctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacgacagaaccacatctctaataattcagaaaccgagccattaagaggcaagagcagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtga
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| Protein seq | MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTIQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVEEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEDNSSSVPLHYVDNYDGIQSVSTCEQSSSHAPADSVPLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPPDEVIPVDIDFLYCSVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNSEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0000600 | OsLaMu_12g0000600.03 | Chr12 | 472764 | 474057 | - | IsoSeq | ||
| CDS seq | atgaattggtcaattgttttgtttctcttttattatttctcttcacctgatcaatttttttgttccctgggaggctgggggagcggccattgctgttacacatatttgtatatt |
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| Protein seq | MNWSIVLFLFYYFSSPDQFFCSLGGWGSGHCCYTYLYI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 473881 | 474035 | - | OsLaMu_12g0000600.02,OsLaMu_12g0000600.01 | OsLaMu_12g0000600.01,OsLaMu_12g0000600.03,OsLaMu_12g0000600.02 | All |
| A5 | Chr12 | 475966 | 476617 | - | OsLaMu_12g0000600.02 | OsLaMu_12g0000600.01,OsLaMu_12g0000600.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.118006 | 10.623794 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0108100 | SBH | 0.330976 | 0.000000 | 4.774576 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01740 | SBH | 0.208586 | 0.000000 | 1.145398 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0108100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000460 | SBH | 0.0 | 19.690197 | 14.684648 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000650 | SBH | 0.149702 | 3.956070 | 1.437336 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000620 | SBH | 0.335421 | 17.653379 | 12.408351 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000480 | SBH | 0.000000 | 0.469527 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000580 | RBH | 1.394860 | 29.121605 | 25.962088 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0006700 | RBH | 6.59898 | 3.601267 | 3.4305115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000550 | RBH | 0.071538 | 0.913895 | 0.650482 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0008700 | SBH | 7.0437075 | 2.0801915 | 10.838152 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000470 | SBH | 0.031986 | 0.255393 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000580 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000580 | RBH | 0.0 | 32.311050 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000590 | RBH | 0.426746 | 0.0 | 1.834819 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000650 | RBH | 0.242192 | 12.298848 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000490 | RBH | 0.154756 | 3.115059 | 4.862952 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000650 | RBH | 0.0 | 7.239790 | 8.799751 |
