Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0022800 | OGI:11076970 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:29040929-29046443 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaacacgaaacgtgcgccgccggcaccggcacatggcgcgccgccgccgaagcgcctgcagatcgacgcagccgggcgcggcgtcgaggcatttgcgcaacgggcgccgacgtcgtctccggtgaagcggcagctccggcggagcatgctcgtcctcttcttcgtgtccgtcgcacaagtgtacgcccgctcgctcgcctcctgtttgatttaattcctccttgggaagtttgttgtctgacccgcgtgctttgcggatgcgcaggaaggaagagcggaggaacaagaacaacgcgcgccctggtcgagtggtgagcagctctgcatcgatctctcgttctataactgaatcaaacaaaatctccccccccccccttcttatttttgctactcttttggtagctcatttcggtgtcctgtgattgtgtagatacatgaagagagttctacgagaaaggcacctgaggatgatgcatttcagagaggcattatgaaagcatttgataatgttcttcagaatcatcttaatcctatttaccggtaagatctctccttcggggtgaaagtagaattggagttaaagaagttataaagtcgatccttgaactagcagagtggccaaataggaccccaaatttacctctctagttgctctcatataatttgttcactgctttgttaaatctagaaccaaaaccgaatgcgcttgaaatctggtttagggtcctgattaatgtatttaattttcatgatgtccttttattatcgagcttgctcatttgcagtttttttattagtaagcatcgaacatgtaaattccctgtttaatatatctaaaatacttgtttggacaactactgatttgatcatttatagttcctctataatgtttttatgttaactgtcaagctgatcaaacattaatgctgatataacacatgcaacaaatctgatctatgcaaatgctacgaaattaaatcacacttattccaatgatcttaaaatgtccagttttatgtattaatcaatatcttatatctttctctatgtcctagaaatatgattttttaataaaaaactaaccttttttcttccacttctttgattgcagctcccttcaacaccttaccaagcaaactgggactctttctgagcgaattggtactctcagccatgaagtggttagatttcggatactttattacaaggacactacttaatactagtttaattaacccctttctgatgagagagcttcttttactgtgttttatcaggaagttactttgtcgagtaaaattaaaactgcaaagtgtttgcttatattttattatgatgaaaaaggtgtttgcctgagacaacttatgttcttatggcataatgattctccaatcaacttgcagggacaaataaaaaagttaatttctaaccgtgatgctaatgagcgctacaggtatggtctttgtaactattgagaatatgcatctctgacttctgttatttccagtatgcaatcttacatatcactgtctgacacacacttaggttcttcctattgtgctgatcaattcttatcaatcacttgaagtgacttctgattactgtcaactgtgtattgatgacactatatatttatggcgatgttcgtttcatgctgttgtgtattacagttgtgaatttcaataaaaaaaggagatttgtagggagagacatcctttcaaatattttttaagaataaattgtgagcatgttggggattgaacatgggatctcagggttgaaaccatacaccccttgccactgtactatcaagtccatctcacagttttgaatttcagacaatttaaagtactgccagatgttcatatgacactataattaatacacaatgtgtttcatactatttatgtctgtattgtagatcagaggcaaaacaagagaatgccgctgtcactgaggaagtgaatcaagaacagacagctctcagatttgccgcaaatgaagttcacgagggtcaaggagttgagttgaggttcctcaataagctgaaagaccatcttgtttatacaaatgacaaaattacatcagatgatggtacagccatcaaaattgccatatttagggataaccagatagttacagccggccaactttcttcagcaagaattgaaattttggttcttcatgataagttttatgatgctgcccctgataagtggactgaatgtgattttgatgcccacatagtaagtagttcaaaaggagcggtgttaggaggagttcttcgagtgaagctgacgaatgggaaggcctccctatctgacgtctttttcaatatgccatcttcgaagactggaagtaaaaagctcattctggcagcaagggttcttagcagcgacaaagctgggcttccgattaaggaagccgtgatgaatcagcctgttgaggtgcaggttaatcgaaacaaatgtaagtttctcttcagaattgcagctggtgttattcagtagattgtttgcatgatgtttctattttgcaagtattctccacattgtttctcggtacctcccaagtcccattgactatataaaaggtcttcctttgtaggattatctttgaaattacaggttgcatactcgaattaactggatttgtatggtctgttggcatgtatctcttgtttcttttttgtccagcaaataaaaagagtgaccatccaaagctgaaagatgaagtgcatcgtttaaagggaatttcagggaagggaaatcgtgctaagtggcttaaagataatggcatccataccgtggcagacttcaaaaaggctttaaacaaggatgaagaaaagatctacactgtaaggcccctggactcccaactaatctctctctctctctctcacgagtgcacaatgtaggcccttacagaaattggcacttctcactgtgtttatttaattggaacttattcttctattcaggaatagcatgttaatttacctttcattgcaatgaaacaatagaagctataaaaattaatgtctcaactccactattgagttgcatgcattaaattgatgagaacaaacaattcacttatacttcaacatcaatttgtagattcatatatttactgtccagatatttttacagtgcagcaaaattttgtggaccgtccattgtgcttttatctgagggtcaatgttctcttacctcatttggaattttcggatcatatttaacctttgttcctcataacattagtttgacgttcaaaagtacaatagttttagtaaagtatgaaacttgttggttacttttatttaattttacatgtaccatagagaatttcatgttttatctaaataccccaaaaataaatattcagttgttttatatatatgtaggacccccaatattaggtgcctctttgggatgttgccctcgcatgcaacgttaatttctgaatgataatttttgtccattatttcatttgggctgtgaaatataatttttttattcaatataataaatcatgaataatcagcggttaggatgactagtatacctcacacctctatagtagtaagacggggcaccttaaaagatctctctatccagtagttttgacaaatgaattcgcttatgcattttgtggagttcaggagtgtttcaacatgaagaaggacaacatgctttggaaagctactgttcaacatgctgaacagtgtgatctcgaaggcaattgcaaattgaaatcatatggagttgaagagaaacatgttatactcttctttaactgcgtacacgaccttgttggagcaacatttcgtggtcgctatgttgcaaaggacaatttcaattcagatgagcaggtatttgatacttgataccggcattgttctacaaatcaaaccttgatctgagcttagaactgtatacacattttcattttgcaggatgaagtgaattgtttgaaaatacaagcatacaatgaactggataacattgtctttgatcacgaaatgaaagacaactttccagtacctttgtcttcaactctgaacacaagcattggtgatgatgcttccattcgcttcacagacacaacaggactaaatcctcccgatttgcatgttacatcacaaggtaaggcatggtattgtcctcttgtctttctttttgccgggccagccaaagagaggtcgaccaagtttcattaatggaaagaagtattttcaaatgtacatggttagttacctcaacaagatgatgtcgagttgttgggaggttgtcaaaaacgacaccatcactgaaagaaaggaaaaaggtcctcttgtctttcatcagacacaatgaatgatgatttaatttgttgtttgcatttgacagttcaagatgctgcggcagttcagactgctcatcatgctacgttcgctcatgcaaatcaactgcctcaaacatttcttaacaacaataatgcttgtgggttcattataggatcagaacaaatttcttttgatccatcattcttcaatggctatcaaggttggttctgcatttgttttggcctttgaacgatttgttttgaagaatatacttttcttaacacagaaaatatttggataattttcaaatgaaggtaatcaagcaggtactatgagacagatcagccgtggatcttctcaatttgacatgactgctattgggtactgtattgctcagccatctgaggctctaccagtaagagctgaagtaagtgaagtttctgttcagtcatcggctcagcctgtaacattcttgctggaacagagatgaaaatattgtcatgttccaagctcaacataactcctaaactagtcaaaccgttgatctattcatgcctataaaattgcagctataacatattgtatgcatgccacgaatatgagactgcctctgatcattgagatcactgcattgtgcatctttctccttgctcacactcattgcatgttaatgagtcttcttttttgcagactactggaggcaataacttgagtggactaatgaatttggacgagaatgtcagcgatgacagccttgatgctttggcgttggttaacagctggatgaattcctctcctccatcgtttaaatgaaccagaacggggagcaaggcagcaagctcaaaactctcacaacgagaggcccggcccgttgctctgcatattctgaaatctgaataatttaactgaaggctctgcttgtaggctgtagccagtaggcttgctggctaactatcttgttattctttttctgcctaaatgaaagatgggtgtattagccagtagagaaaactaaatttatgtttcaaaaaaacttggactgttctatgtatattatggtttcggaacttacgttgctgatcagatcatcgttgaaacttgtgaagttatgagccctgtaagcacagtgcaaattaagtattagtacttctgttcttttctatttgatgttttaaagctctactaa
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| CDS seq | atgaacacgaaacgtgcgccgccggcaccggcacatggcgcgccgccgccgaagcgcctgcagatcgacgcagccgggcgcggcgtcgaggcatttgcgcaacgggcgccgacgtcgtctccggtgaagcggcagctccggcggagcatgctcgtcctcttcttcgtgtccgtcgcacaagtgaaggaagagcggaggaacaagaacaacgcgcgccctggtcgagtgatacatgaagagagttctacgagaaaggcacctgaggatgatgcatttcagagaggcattatgaaagcatttgataatgttcttcagaatcatcttaatcctatttaccgctcccttcaacaccttaccaagcaaactgggactctttctgagcgaattggtactctcagccatgaagtgggacaaataaaaaagttaatttctaaccgtgatgctaatgagcgctacagatcagaggcaaaacaagagaatgccgctgtcactgaggaagtgaatcaagaacagacagctctcagatttgccgcaaatgaagttcacgagggtcaaggagttgagttgaggttcctcaataagctgaaagaccatcttgtttatacaaatgacaaaattacatcagatgatggtacagccatcaaaattgccatatttagggataaccagatagttacagccggccaactttcttcagcaagaattgaaattttggttcttcatgataagttttatgatgctgcccctgataagtggactgaatgtgattttgatgcccacatagtaagtagttcaaaaggagcggtgttaggaggagttcttcgagtgaagctgacgaatgggaaggcctccctatctgacgtctttttcaatatgccatcttcgaagactggaagtaaaaagctcattctggcagcaagggttcttagcagcgacaaagctgggcttccgattaaggaagccgtgatgaatcagcctgttgaggtgcaggttaatcgaaacaaatcaaataaaaagagtgaccatccaaagctgaaagatgaagtgcatcgtttaaagggaatttcagggaagggaaatcgtgctaagtggcttaaagataatggcatccataccgtggcagacttcaaaaaggctttaaacaaggatgaagaaaagatctacactgagtgtttcaacatgaagaaggacaacatgctttggaaagctactgttcaacatgctgaacagtgtgatctcgaaggcaattgcaaattgaaatcatatggagttgaagagaaacatgttatactcttctttaactgcgtacacgaccttgttggagcaacatttcgtggtcgctatgttgcaaaggacaatttcaattcagatgagcaggatgaagtgaattgtttgaaaatacaagcatacaatgaactggataacattgtctttgatcacgaaatgaaagacaactttccagtacctttgtcttcaactctgaacacaagcattggtgatgatgcttccattcgcttcacagacacaacaggactaaatcctcccgatttgcatgttacatcacaaggtactatgagacagatcagccgtggatcttctcaatttgacatgactgctattgggtactgtattgctcagccatctgaggctctaccagtaagagctgaaactactggaggcaataacttgagtggactaatgaatttggacgagaatgtcagcgatgacagccttgatgctttggcgttgctctactaa
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| Protein seq | MNTKRAPPAPAHGAPPPKRLQIDAAGRGVEAFAQRAPTSSPVKRQLRRSMLVLFFVSVAQVKEERRNKNNARPGRVIHEESSTRKAPEDDAFQRGIMKAFDNVLQNHLNPIYRSLQHLTKQTGTLSERIGTLSHEVGQIKKLISNRDANERYRSEAKQENAAVTEEVNQEQTALRFAANEVHEGQGVELRFLNKLKDHLVYTNDKITSDDGTAIKIAIFRDNQIVTAGQLSSARIEILVLHDKFYDAAPDKWTECDFDAHIVSSSKGAVLGGVLRVKLTNGKASLSDVFFNMPSSKTGSKKLILAARVLSSDKAGLPIKEAVMNQPVEVQVNRNKSNKKSDHPKLKDEVHRLKGISGKGNRAKWLKDNGIHTVADFKKALNKDEEKIYTECFNMKKDNMLWKATVQHAEQCDLEGNCKLKSYGVEEKHVILFFNCVHDLVGATFRGRYVAKDNFNSDEQDEVNCLKIQAYNELDNIVFDHEMKDNFPVPLSSTLNTSIGDDASIRFTDTTGLNPPDLHVTSQGTMRQISRGSSQFDMTAIGYCIAQPSEALPVRAETTGGNNLSGLMNLDENVSDDSLDALALLY |
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| Function | Calmodulin-binding protein 60 D [UniProtKB/Swiss-Prot:Q0WVV6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0022800 | OsLaMu_11g0022800.01 | Chr11 | 29040929 | 29046443 | + | NAM | ||
| CDS seq | atgaacacgaaacgtgcgccgccggcaccggcacatggcgcgccgccgccgaagcgcctgcagatcgacgcagccgggcgcggcgtcgaggcatttgcgcaacgggcgccgacgtcgtctccggtgaagcggcagctccggcggagcatgctcgtcctcttcttcgtgtccgtcgcacaagtgaaggaagagcggaggaacaagaacaacgcgcgccctggtcgagtgatacatgaagagagttctacgagaaaggcacctgaggatgatgcatttcagagaggcattatgaaagcatttgataatgttcttcagaatcatcttaatcctatttaccgctcccttcaacaccttaccaagcaaactgggactctttctgagcgaattggtactctcagccatgaagtgggacaaataaaaaagttaatttctaaccgtgatgctaatgagcgctacagatcagaggcaaaacaagagaatgccgctgtcactgaggaagtgaatcaagaacagacagctctcagatttgccgcaaatgaagttcacgagggtcaaggagttgagttgaggttcctcaataagctgaaagaccatcttgtttatacaaatgacaaaattacatcagatgatggtacagccatcaaaattgccatatttagggataaccagatagttacagccggccaactttcttcagcaagaattgaaattttggttcttcatgataagttttatgatgctgcccctgataagtggactgaatgtgattttgatgcccacatagtaagtagttcaaaaggagcggtgttaggaggagttcttcgagtgaagctgacgaatgggaaggcctccctatctgacgtctttttcaatatgccatcttcgaagactggaagtaaaaagctcattctggcagcaagggttcttagcagcgacaaagctgggcttccgattaaggaagccgtgatgaatcagcctgttgaggtgcaggttaatcgaaacaaatcaaataaaaagagtgaccatccaaagctgaaagatgaagtgcatcgtttaaagggaatttcagggaagggaaatcgtgctaagtggcttaaagataatggcatccataccgtggcagacttcaaaaaggctttaaacaaggatgaagaaaagatctacactgagtgtttcaacatgaagaaggacaacatgctttggaaagctactgttcaacatgctgaacagtgtgatctcgaaggcaattgcaaattgaaatcatatggagttgaagagaaacatgttatactcttctttaactgcgtacacgaccttgttggagcaacatttcgtggtcgctatgttgcaaaggacaatttcaattcagatgagcaggatgaagtgaattgtttgaaaatacaagcatacaatgaactggataacattgtctttgatcacgaaatgaaagacaactttccagtacctttgtcttcaactctgaacacaagcattggtgatgatgcttccattcgcttcacagacacaacaggactaaatcctcccgatttgcatgttacatcacaaggtactatgagacagatcagccgtggatcttctcaatttgacatgactgctattgggtactgtattgctcagccatctgaggctctaccagtaagagctgaaactactggaggcaataacttgagtggactaatgaatttggacgagaatgtcagcgatgacagccttgatgctttggcgttgctctactaa
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| Protein seq | MNTKRAPPAPAHGAPPPKRLQIDAAGRGVEAFAQRAPTSSPVKRQLRRSMLVLFFVSVAQVKEERRNKNNARPGRVIHEESSTRKAPEDDAFQRGIMKAFDNVLQNHLNPIYRSLQHLTKQTGTLSERIGTLSHEVGQIKKLISNRDANERYRSEAKQENAAVTEEVNQEQTALRFAANEVHEGQGVELRFLNKLKDHLVYTNDKITSDDGTAIKIAIFRDNQIVTAGQLSSARIEILVLHDKFYDAAPDKWTECDFDAHIVSSSKGAVLGGVLRVKLTNGKASLSDVFFNMPSSKTGSKKLILAARVLSSDKAGLPIKEAVMNQPVEVQVNRNKSNKKSDHPKLKDEVHRLKGISGKGNRAKWLKDNGIHTVADFKKALNKDEEKIYTECFNMKKDNMLWKATVQHAEQCDLEGNCKLKSYGVEEKHVILFFNCVHDLVGATFRGRYVAKDNFNSDEQDEVNCLKIQAYNELDNIVFDHEMKDNFPVPLSSTLNTSIGDDASIRFTDTTGLNPPDLHVTSQGTMRQISRGSSQFDMTAIGYCIAQPSEALPVRAETTGGNNLSGLMNLDENVSDDSLDALALLY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0669100 | SBH | 0.481992 | 0.550880 | 0.187061 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44700 | SBH | 0.132177 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0669100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023240 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022860 | SBH | 0.0 | 11.937660 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022670 | RBH | 0.0 | 0.056325 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022840 | SBH | 0.0 | 0.000000 | 1.195304 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0406800 | SBH | 0.1803775 | 53.778559 | 0.015017 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023700 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0426400 | RBH | 0.1849645 | 1.796611 | 0.763888 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023490 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023040 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022750 | SBH | 0.669859 | 0.0 | 0.037494 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023060 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023470 | SBH | 0.0 | 0.0 | 0.0 |
