Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0023240 | OGI:11076970 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:28149865-28157165 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaactcgaaacgtgcgccgccgccggcaccggcacacggcgcgccgccgccgaagcgcctgcagatcgacgcagcccggagcggcgccgaggcgttagcgcaactggcgccgaCGTcgtcgtctcccgtgaagcggcagctccggcggggcatgctcgtgctcttcttcgtgtccgccgcgcaagtgtacgcacgccggctcgcacgcctcctgtttgatttaattcctccgtgggaagctcgttgtctgatcacccgcgtgctttgcggatgcgcaggaaggaagagcggaggaacaagaacaagaacaacgcgcgccctgctcgagtggcggtgagcagctctgcatcgatctctcgttctggaactgaatcaaactaaatcttttctcccatcatttttgctactcttttggtagctcattccagtgtcctgtgattaattgtgtagatacatgaagagagttctacttcacagagaaaggcacccgaggatgatgcctttcagagaggcattatgaaagcatttgataatgcccttcagaaacatcttaatcctatctattggtaagatctctcagtcgggatgaaagtagaattggagttgaagaagttataaaatcgatccttgaactagcagagtggtcaaataggagtaggaccacaaatttacctctctagctagttgcttagataagtcccTtttttttttttggttgagattgctcatttgcagttttttttagtaagcatcgaacgtgtaaattccctgtttaatacctctaaaatacttgtttggacaactaatgatttcatcatttacagttcctctatgatgtttttatgttaactgtcaagctgatcaaactttaatgctgatataacacatgcaacaaatctgatctatgcagatgctacgaaactaaatcacacttattgcattgatcttaaattgtccagttttatgtattaatcaatatcttatatctttctctatgtcctagaaatatgattttttaatAaaaaataaactagccttttttcttccacttctttgattgcagctctcttcaacaccttaccaagcagactgggactctttctgagcgaattgatactgtcagccatgaagtggttagatttcggatactttattacaaggacactactttatactagtttaattaacccctttctgatgagagagcttcttttattgtgttttatcaggaagttacttggtcgagtaaaattaaaactgcaagtgtttgcttacattttattatgatgaaaaaaaatgtttgcctgagacaacttatgttcttatggcatagtgattctcctctcaacttgcagggacaaataaaaaagttaatttctaaccgtgatgctaatgagcgctacaggtatggtctttataactattgagaatatgcatctctgacttctgttatttccagtatgcaatcttacatatcaatgtctcacacacacttaggttcttcctattgtgctgatcagttcttatcaatcacttgaagtgacttctgaattactgtcaactgtgtattgatggcacTAtatatATTTATAGCGATGTTCGTTTCATGATGTTGTGTATTACAGTTGTGAATTTCAGACAATTTAAAGTACTGCCAGATGTTCATATGACACTATAATTAATGAGCAATGCTCCCGTCCTGCGTTTTGTACCGCGTGGTACTTGTACCGCGTGGTACCAAAACCCATCCAGCCGTTGATTTTGTGGGGGGTAGGATTGGAATTGGCGCCGGCGCACCGCAGACGGCGTCGACGGTGGCGATTTGGCAGCACCGATAGCCCACCACCAGCGCACTACCAACGGCCGATAGGCCCGGCAGCAGTGATGCACCGCTCCTTGCCGCGCGCGGGGCCGGCCACGGCGTCGACGGCGGCGACGCGAGTACCCACGGCCTGTTTGCCCTCGCATCGCGCTCCTCCACGACTAAGTGACCGCGAGCAGCCAGGCGCGCGGGGGGCTGTCGCTCGGGGCGACGGCGGCGCCGCGAGCACCGCAAGCCTCGGCGCTCGGGGAGGTTACTGCTGGGGGAGGCGGCAGCCGGAAGCCACGGGGCTCGCGGCGACGGCAGCCGGAAGCCGCGGGGCTCGCGACGACGGCGGGGAGGTCAGTGCAGCAGGCGGCGGCGCAGTACAAGGGTTAGCGGCGGACAAGTCTCTGCGATGCGGACACCACTCATCGATCCGGATATTGTGAAAAGACAACGCTACCCTTCCACCCTACGATTTCAGGCGGTACCGCGCAAAGGAGAAATTTGGTACCGCGCGGTACCGTGCATTCCTGACCGTTAGATCTGTTTACATCCAACGGCTGCGATTTGGTACCACCTTGGTACCACGCGGTACCTCGTGACGATGCTGGACGGTAAAATTTCTAATAATTAATACACAATGGTGTTTCATATatatttatgtctgtattgtagatcagaggcaaatcaagagaatgctgctgtcactgaggaagtgaatcaagaacaaacagctctcagatttgccgcaaatgaagttcatgagggtcaaggagttgagttgaggttcctcaataagctgaaagaccatcttgtttatacaaatgacaaaattacagcagaggatggtacagctatcaaaattgccatatttagggataataagatagttactgccggccaactttcttcagcaagaattgaaattttggttcttcatgataagttttatgatgctgcccctgataactggactgcatgtgagtttgacgcccacatagtaagtagttcaaaaggggcggtgttaggaggtgttcttcgagtgaagcttaagaatggggaggcctccctatctgacgtctctttcaatatgccatcttcgaagactggaagtaaaaagctcattctggcagcaagggttcttagcagcgacaaagctGggcttcagattaaggaagccgtgatgaatcagcctgttgaggtgcaggttaatcgaaacaaatgtaagtttttcttcagaattgcagctggtgtattcagtagattgtttgcctgatgtttctattttgcaagtattctccacattgtttctcggtacctcccaagtcctaatgactacataaaaagtcttccttcgtaggattatctttgaaattacaggttgcatactcaaataaactggatttgtatgttctgttggcatttatctttcttgtttccTttttgtccagcaaacaaaaatagtaactgtccaaagctgaaagatgaagtgcatcgtttaaagggaatttcagggaagggagaacgtgctaaatggcttaaaaataatggcatccataccgtggcagacttcaaaaaggctttaaacaaggatgaagaaaagatctgcactgtaaggctccttgactcccaactaatctctctctctctctctctctctctctcttgtacaatgtaggcccccttacagaaattggcacttctcactgtgtttattttaattattgaaattattcttctattcaggaatatcatgttaatttacctttcattgcaatgaaacaattgaagtagataaattaaattaatgtctcaactccactattgagttgcatgcattaaatttatgaggaagaacaaacaattcacttaaacttcaacatcaatttgtacactgatatacgtatttactatccagatattttacactgcaccaaaattttgtggactgtccattgtgcttttatctgaGggtcaatattctcttacctcatttagaattttcggatcatatttaacctttgttcctcgtaacattagtttgacgttcaaaagtacaatatttttagtaaagtatgaaacttgttgcttacttttatttaattttacatgtaccatagagaatttcatgttttatctaaaaaattagccaaaaaataaatattcagttttttttataaatatgtaggacccccaaaatattaggtgcctctttggtatgttgcCCTtgcatgcatcgttaattttttaatgataatttttgtccatttcatttgggctgtgaaatattaatggaaggaggacatagtttttttattcaatataataaatcatgaattttttcgggaatacgcgagacgcgcatttttgtattaagaaggaataaatgaaattacaaccaaacagtttaaaagagaaggggacggggtacaggaggggggggaacagaaatcctaatctcctaaagaatttggcgacccgtgaacaaacgaaggaactaccatggccggaatggctgccctagccatccgccaaaggtccgcttcccctgacatagccctagcgatctccggccaggttctgctttcctggttaaagacccgattgtttctttccttccaaattgtccaagctaccagcgtggcgatggtgtcgaaaccccggcgatgatccttggtcaacttcttgcggctgtcacacaaccagccgtggaaggaccgctcattgagcgggaggcattcggcatggccgatagcactaagagcgatccaccaaagttgtcgcgattccgggcaagcgaccaAGagatgatcaattgtttcgggaccttgatcacagagcgggcagcggtccgggtgaggcaatccacgactttggaggcggtccgccgtccaacaacggtttaacgcaaccagccaaaggaagtaacgacatcgagggggcgcgaaagatttccaaatcggcgcgtgttggaagcgagttcttccgaaaaagaggacacgataagccgaacgggaggagtactgccccgagttctcccaccgccaagaaagcttgtctggctcctccgttagctgcacaggtcgaaggagatcccatagcttgaagtactcaaggatcgcctgtaCccccattgccaaggagatgtctcggatccatctcctgtcgtgcagcacatctgctaccgtgcgcttgctccgtagtcggcttgggacagccgcccagactgccggcgccaacgactggacggaggcgccattcagccagcaatcttcccagaacaacaccgagcgaccatctcccaccgagcacaccaaagagattgagacaatgttgcgttccttttgtgagattgggatattaagtccctgccagggcttttccggagaagttcgctgctgccagagccaacgcgaccgcagggccagccccatcctctctaggtcggggaagcccaatccaccatactccttcggagagcaaacccgggcccaagcgacccggcaggcgccgccgcttactgaggccttgcccgcccaaagaaagccgcggcggaatttatctattcctttgattacccacttcggcgcattgatcgccatcaacaagtagataggaattgagctcaagaccgtgttcaccatggttgctctcccgattggcgtcattaagtgcgacatccaaagcggaaggcggcagccgattctgtcaaccagcggctgcaaatcttcctttttcagacggaagatggacaggggcagccccaagtatgtgcaagggaaagaggcgacctggcacggcagttcgtcttggagagtttggagatccacctcattgcactgaattggaagcgccgagcatttagcaaagtttgttcgaaggccagatgcttccccgaagatggaaagtacctccgtcgcagcacgaatctcctctactgtcggccggatgaaggcgaccacatcatccgcgtagagcgagactctgtgagggatccccagcggttgcaagaggccgtcggactccgctttggcaaaaatcgagctcagaacatccatagccagaatgaaaatcatcggcgagataaatcatgaataatcagcggttaggatgactagcatacctcttacctctatagtagtaactagtaagacagagcactttaaaagatctctctatccagtagttttgacaaatgaattcacttatgtatttcgtggagttcaggagtgtttcaacatgaagaaggacaacatgctttggaaagctactgttgaacatgctgaacagtgtgatctcgaaggcaattacaaactgaaatcatatagagttgaagagaaacatgttacacttttctttaactgtgtacacgacctcgttggagcaaaatttcgtggtcgctatgttgcaaaggacaatttcagttcagatgagaaggtatatgttgataattgataccagcattgttctacaaatccaaaccttgatgtgaacttagaactgtatacacaTttttttttacaggatgaagtgaattgtttgaaaatacaagcatacgatgaactggataacattgtctttgatcacgaaatgaaagacaattatccagtacctttgtcttcaactctgaacacaggactaaatcctcccgatttgcatgttacatgtcaaggtaaggcattggtcttgtcctcttgtcttccatcagacacaatgaatgatgatttaatttgttgtttgcatttacagttcaagatacagctgtagttgagactgctcattatgctacgtttgcagatgcaaatcaactgcctcaaacatttcttaacaacaatagtgcttgtgggttcattataggatcagaacaaattcctgttgatccatcattcttcAatggctatcgaggttggttctgcatttgttttggcttttgaatgatttgttttggagaacatacttgtcttaacgctgaaaatatttggataattttcaaatgaaggtaatcaagcaggtactatgagacagatcgacatgactgctattgggtactgtattgctcaatcatctcaggctctaccagtaatagctgaagtaagtgaagtttctgttcagtcatcggctcagccttgaacattcttactggaacagagacgaaaatattgccatgttacaagctcaacataactcccaaactagttaaaccgttgatcttttcatgccaagaatattgcagctataacatattgtatgcatgccacgaatatgagactgcctctgatcattgagatcactgcattgtgcatctttctccTAtatatatatatatcccactcacactgattgcatgttaatgagtcttcttttttgtagactacttctggaggcaataacttgactggactaatgaatatggacgagaatgtcagcgatgacagtgttgatgctttcgcgttggttaacagctggataaattcctctcctccgtcgtttaa
More
|
||||||||||
| CDS seq | atgaactcgaaacgtgcgccgccgccggcaccggcacacggcgcgccgccgccgaagcgcctgcagatcgacgcagcccggagcggcgccgaggcgttagcgcaactggcgccgaCGTcgtcgtctcccgtgaagcggcagctccggcggggcatgctcgtgctcttcttcgtgtccgccgcgcaagtgaaggaagagcggaggaacaagaacaagaacaacgcgcgccctgctcgagtggcgatacatgaagagagttctacttcacagagaaaggcacccgaggatgatgcctttcagagaggcattatgaaagcatttgataatgcccttcagaaacatcttaatcctatctattgctctcttcaacaccttaccaagcagactgggactctttctgagcgaattgatactgtcagccatgaagtgggacaaataaaaaagttaatttctaaccgtgatgctaatgagcgctacagatcagaggcaaatcaagagaatgctgctgtcactgaggaagtgaatcaagaacaaacagctctcagatttgccgcaaatgaagttcatgagggtcaaggagttgagttgaggttcctcaataagctgaaagaccatcttgtttatacaaatgacaaaattacagcagaggatggtacagctatcaaaattgccatatttagggataataagatagttactgccggccaactttcttcagcaagaattgaaattttggttcttcatgataagttttatgatgctgcccctgataactggactgcatgtgagtttgacgcccacatagtaagtagttcaaaaggggcggtgttaggaggtgttcttcgagtgaagcttaagaatggggaggcctccctatctgacgtctctttcaatatgccatcttcgaagactggaagtaaaaagctcattctggcagcaagggttcttagcagcgacaaagctGggcttcagattaaggaagccgtgatgaatcagcctgttgaggtgcaggttaatcgaaacaaatcaaacaaaaatagtaactgtccaaagctgaaagatgaagtgcatcgtttaaagggaatttcagggaagggagaacgtgctaaatggcttaaaaataatggcatccataccgtggcagacttcaaaaaggctttaaacaaggatgaagaaaagatctgcactgaatatcatgatgaagtgaattgtttgaaaatacaagcatacgatgaactggataacattgtctttgatcacgaaatgaaagacaattatccagtacctttgtcttcaactctgaacacaggactaaatcctcccgatttgcatgttacatgtcaaggtactatgagacagatcgacatgactgctattgggtactgtattgctcaatcatctcaggctctaccagtaatagctgaaactacttctggaggcaataacttgactggactaatgaatatggacgagaatgtcagcgatgacagtgttgatgctttcgcgttgctggataaattcctctcctccgtcgtttaa
More
|
||||||||||
| Protein seq | MNSKRAPPPAPAHGAPPPKRLQIDAARSGAEALAQLAPTSSSPVKRQLRRGMLVLFFVSAAQVKEERRNKNKNNARPARVAIHEESSTSQRKAPEDDAFQRGIMKAFDNALQKHLNPIYCSLQHLTKQTGTLSERIDTVSHEVGQIKKLISNRDANERYRSEANQENAAVTEEVNQEQTALRFAANEVHEGQGVELRFLNKLKDHLVYTNDKITAEDGTAIKIAIFRDNKIVTAGQLSSARIEILVLHDKFYDAAPDNWTACEFDAHIVSSSKGAVLGGVLRVKLKNGEASLSDVSFNMPSSKTGSKKLILAARVLSSDKAGLQIKEAVMNQPVEVQVNRNKSNKNSNCPKLKDEVHRLKGISGKGERAKWLKNNGIHTVADFKKALNKDEEKICTEYHDEVNCLKIQAYDELDNIVFDHEMKDNYPVPLSSTLNTGLNPPDLHVTCQGTMRQIDMTAIGYCIAQSSQALPVIAETTSGGNNLTGLMNMDENVSDDSVDAFALLDKFLSSVV |
||||||||||
| Function | Calmodulin-binding protein 60 C [UniProtKB/Swiss-Prot:C0SV51] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0023240 | OsKeNa_11g0023240.01 | Chr11 | 28149865 | 28157165 | + | NAM | ||
| CDS seq | atgaactcgaaacgtgcgccgccgccggcaccggcacacggcgcgccgccgccgaagcgcctgcagatcgacgcagcccggagcggcgccgaggcgttagcgcaactggcgccgaCGTcgtcgtctcccgtgaagcggcagctccggcggggcatgctcgtgctcttcttcgtgtccgccgcgcaagtgaaggaagagcggaggaacaagaacaagaacaacgcgcgccctgctcgagtggcgatacatgaagagagttctacttcacagagaaaggcacccgaggatgatgcctttcagagaggcattatgaaagcatttgataatgcccttcagaaacatcttaatcctatctattgctctcttcaacaccttaccaagcagactgggactctttctgagcgaattgatactgtcagccatgaagtgggacaaataaaaaagttaatttctaaccgtgatgctaatgagcgctacagatcagaggcaaatcaagagaatgctgctgtcactgaggaagtgaatcaagaacaaacagctctcagatttgccgcaaatgaagttcatgagggtcaaggagttgagttgaggttcctcaataagctgaaagaccatcttgtttatacaaatgacaaaattacagcagaggatggtacagctatcaaaattgccatatttagggataataagatagttactgccggccaactttcttcagcaagaattgaaattttggttcttcatgataagttttatgatgctgcccctgataactggactgcatgtgagtttgacgcccacatagtaagtagttcaaaaggggcggtgttaggaggtgttcttcgagtgaagcttaagaatggggaggcctccctatctgacgtctctttcaatatgccatcttcgaagactggaagtaaaaagctcattctggcagcaagggttcttagcagcgacaaagctGggcttcagattaaggaagccgtgatgaatcagcctgttgaggtgcaggttaatcgaaacaaatcaaacaaaaatagtaactgtccaaagctgaaagatgaagtgcatcgtttaaagggaatttcagggaagggagaacgtgctaaatggcttaaaaataatggcatccataccgtggcagacttcaaaaaggctttaaacaaggatgaagaaaagatctgcactgaatatcatgatgaagtgaattgtttgaaaatacaagcatacgatgaactggataacattgtctttgatcacgaaatgaaagacaattatccagtacctttgtcttcaactctgaacacaggactaaatcctcccgatttgcatgttacatgtcaaggtactatgagacagatcgacatgactgctattgggtactgtattgctcaatcatctcaggctctaccagtaatagctgaaactacttctggaggcaataacttgactggactaatgaatatggacgagaatgtcagcgatgacagtgttgatgctttcgcgttgctggataaattcctctcctccgtcgtttaa
More
|
|||||||
| Protein seq | MNSKRAPPPAPAHGAPPPKRLQIDAARSGAEALAQLAPTSSSPVKRQLRRGMLVLFFVSAAQVKEERRNKNKNNARPARVAIHEESSTSQRKAPEDDAFQRGIMKAFDNALQKHLNPIYCSLQHLTKQTGTLSERIDTVSHEVGQIKKLISNRDANERYRSEANQENAAVTEEVNQEQTALRFAANEVHEGQGVELRFLNKLKDHLVYTNDKITAEDGTAIKIAIFRDNKIVTAGQLSSARIEILVLHDKFYDAAPDNWTACEFDAHIVSSSKGAVLGGVLRVKLKNGEASLSDVSFNMPSSKTGSKKLILAARVLSSDKAGLQIKEAVMNQPVEVQVNRNKSNKNSNCPKLKDEVHRLKGISGKGERAKWLKNNGIHTVADFKKALNKDEEKICTEYHDEVNCLKIQAYDELDNIVFDHEMKDNYPVPLSSTLNTGLNPPDLHVTCQGTMRQIDMTAIGYCIAQSSQALPVIAETTSGGNNLTGLMNMDENVSDDSVDAFALLDKFLSSVV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0669100 | SBH | 0.481992 | 0.550880 | 0.187061 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44700 | RBH | 0.132177 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0669100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023220 | RBH | 0.0 | 0.714080 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022880 | RBH | 0.308641 | 0.0 | 1.223629 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022840 | RBH | 0.0 | 0.000000 | 1.195304 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0406800 | RBH | 0.1803775 | 53.778559 | 0.015017 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023700 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0424700 | RBH | 0.0229205 | 1.4932155 | 0.0605775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023040 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022750 | SBH | 0.669859 | 0.0 | 0.037494 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023060 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023470 | RBH | 0.0 | 0.0 | 0.0 |
