Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0022740 | OGI:11077130 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:28961890-28962519 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccggtgggagggttctcggtgacggcgccgcctcccggcacggagttcgaggcgaagatcacgccgaccgtggtcgtctcctgcgtcatggcggccaccggcggcctcatgttcggctacgacatcggcatcgcaggtacgcaacgcatgggcggccgccgcttacgtccgtccagcgtcgccatggccggctttacatacatagttttgtttggttaggcggcgtgacggcgatggatgacttcctgcgcgagttcttccccgcggtgctggagaagaagacgcgcacgcgcgaggtgaaggcgacgagcaactattgcaagtacgacgaccaGggcttgcagctcttcacctcgtcactctacctcgccgccctcgtcgccaccttgctcgcctcctacaccacccgacggctcggccgccgcctcaccatgctcgtcgccggcgtcctcttcaccgtcggcgccaTCCtcaacggcgccgcccggaacctcgccacgctcgtcgccggcaggatcctgctcggctgcgccgtcggcttcgcgaatcaggcaagcagaattctagcccctataccttattgcgacaaaaatatattatcgcatataattaagtaatactcctgcc
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| CDS seq | atgccggtgggagggttctcggtgacggcgccgcctcccggcacggagttcgaggcgaagatcacgccgaccgtggtcgtctcctgcgtcatggcggccaccggcggcctcatgttcggctacgacatcggcatcgcaggcggcgtgacggcgatggatgacttcctgcgcgagttcttccccgcggtgctggagaagaagacgcgcacgcgcgaggtgaaggcgacgagcaactattgcaagtacgacgaccaGggcttgcagctcttcacctcgtcactctacctcgccgccctcgtcgccaccttgctcgcctcctacaccacccgacggctcggccgccgcctcaccatgctcgtcgccggcgtcctcttcaccgtcggcgccaTCCtcaacggcgccgcccggaacctcgccacgctcgtcgccggcaggatcctgctcggctgcgccgtcggcttcgcgaatcaggcaagcagaattctagcccctataccttattgcgacaaaaatatattatcgcatataattaagtaa
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| Protein seq | MPVGGFSVTAPPPGTEFEAKITPTVVVSCVMAATGGLMFGYDIGIAGGVTAMDDFLREFFPAVLEKKTRTREVKATSNYCKYDDQGLQLFTSSLYLAALVATLLASYTTRRLGRRLTMLVAGVLFTVGAILNGAARNLATLVAGRILLGCAVGFANQASRILAPIPYCDKNILSHIIK |
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| Function | Sugar transport protein MST4 [UniProtKB/Swiss-Prot:Q10PW9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0022740 | OsLaMu_11g0022740.01 | Chr11 | 28961890 | 28962519 | + | NAM | ||
| CDS seq | atgccggtgggagggttctcggtgacggcgccgcctcccggcacggagttcgaggcgaagatcacgccgaccgtggtcgtctcctgcgtcatggcggccaccggcggcctcatgttcggctacgacatcggcatcgcaggcggcgtgacggcgatggatgacttcctgcgcgagttcttccccgcggtgctggagaagaagacgcgcacgcgcgaggtgaaggcgacgagcaactattgcaagtacgacgaccaGggcttgcagctcttcacctcgtcactctacctcgccgccctcgtcgccaccttgctcgcctcctacaccacccgacggctcggccgccgcctcaccatgctcgtcgccggcgtcctcttcaccgtcggcgccaTCCtcaacggcgccgcccggaacctcgccacgctcgtcgccggcaggatcctgctcggctgcgccgtcggcttcgcgaatcaggcaagcagaattctagcccctataccttattgcgacaaaaatatattatcgcatataattaagtaa
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| Protein seq | MPVGGFSVTAPPPGTEFEAKITPTVVVSCVMAATGGLMFGYDIGIAGGVTAMDDFLREFFPAVLEKKTRTREVKATSNYCKYDDQGLQLFTSSLYLAALVATLLASYTTRRLGRRLTMLVAGVLFTVGAILNGAARNLATLVAGRILLGCAVGFANQASRILAPIPYCDKNILSHIIK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0594000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38160 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0594000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023220 | SBH | 0.0 | 0.0 | 1.134706 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023190 | SBH | 0.197088 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022830 | SBH | 0.0 | 1.253209 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022630 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022790 | SBH | 2.093034 | 0.0 | 1.635827 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0406500 | SBH | 0.248178 | 1.836681 | 1.3062415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019610 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0424300 | SBH | 0.716266 | 7.009023 | 0.0200645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023420 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019040 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018720 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023010 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023420 | SBH | 0.000000 | 0.0 | 0.312500 |
