Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0023190 | OGI:11077130 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:28106294-28112157 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccggcgggagggttCtccgtgtcgccagcgtcgccgCccggcacggagttcgaggcgaagatcacggcggccgtggtcgtctcctgcgtcatggcggccaccggcggcctcatattcggctacgacatcggcatcgcaggtacgcaacacacgggcgcccgccgcctacgtccgtccagccggcgtcgccggccatggccggcTttacatatgcatagtttaattaatttgtttggttaattaggcggcgtgacggcgatggacgacttcctgcgcgagttcttcccggcggtgctggagaagaagacgcgcacgcgcgaggtgaaggagacgacgaccagcaactactgcaagtacgacgaccagggcctgcagctcttcacctcgtcgatctacctcgccgccctcgtcgccaccttgttcgcctcctacaccacccgccgcctcggccgccgcctcaccatgctcgtcgccggcgtcctcttcaccgtcggcgccatcctcaacggcgccgcccggaacctcgccacgctcgtcgccggcaggatcctgctcggctgcgccgtcggcttcgcaaatcaggcaagcagaattctatcctatacaccttattgcaacaaaatatattattgcatttaatataagtttacagagttaaataaagtcgcatataaactgctccctccatttctaaatatttgacgccgttaactttttttaatatgtttgacagttcgttttattaaaatatttaagtaattattaattatttttctatcatttgattcattattaaatatacttacatgtatatatatatttttacatatttcgcaaaagtttttgaattagacgaacggtcaaatatatacttaaaattaaaattaatgatattaaatatttagaaacgaatggagagtactagtagatggaacggttctagtacggttttaccgccagcagtcgtgattgcgtacgtgtggccgtcccaattgtcagcatgaaacagttggtcaattttgccgtttgttgaccgacttctttgggctgggtttgcaactcctttttcctaacccatctctctcgttttccacgcgtacgtttttcaaactgctaaacagtgtgttttttttaaaagtttctatacgaaagttgcttAaaaaatcaaattaattcatttttaaaaaaaatagctaatacttaattaaccacatgctaatggaccgctccgttttccgtgcggggagatgggttcccaaccccaaacttacgaacacacctcaattggtgatgttgctctcgttgctgcgttgctggcgatgaccttttggtgatcgagcttgccgaaccctatgtccctatcctagtacactattccacgccgtgcttcatttttctactgcacaatagagtgattgttttttttcaattctcttatcccaaccaatcaccaatcataagcacctctcgcctaagagaaaaatctcaaattaccatcctatctgacctttcgatgccttctgagttttgccttctcccttCccctgaattttcgcttgattctctctgtacccattccattagatgaccgttagatctattaacttattaaagaaatagaaaaagaagtctccacgttcgctctcacggtctagaaattctcacattaatcggagaaaagaaaaacagagtccatatagaagtacaatttagaaatggttgaaattcgaatttaaaaaataagaaatattggaagaggaaactagagtccatatagaaatacaattgagaaataatagaaattcgaaattaaaaataaggaatattagaagtagagtatagagtccatatagaaatacaattaagaaataatagaaattcggaattaaaaataagaattattagaagtagagTAtatagtccatatagaaatacaatgaagaaataatagaaattcggaattaaaaataaggaatattagaagtagagcatagagtccATataagaattttaaaaggagcctccacattcgctctcacgggctagaaattcccacattaataggagaaaaagaaaaaacagagtccatatagaaatacaatttagaaatagttgaaattcagaattaaaaaataagaaatattagaagaggagactagagtacatatagaaatacaattgagaacaatagaaattcggaattaaaaataaggaatattagaagtagagtatagagtccATatagaaatacaattaagaaataatagaaatttggaattaaaaataaggaatattagaagtagagtatatagtccatagagaaatacaattaagaaataatagaaattcggaattagaaataaggaatattagaagtagagtatagagtccatataagaaTttaaaactaactaaaatttggaataaacataataaaattaaaagtagagtttagagttcgtataaaaatacaatttacaaataattaaaattcaaaaTaaaaaaaacttgggaagaagagtctaaagtcaatataagaatacaatttagaagtaatttaaattcgaaattaaaaattaaagaatattgaaagatgactttagagtccacatataaatacaattagaaataataaaaattcagaattaaaaataaataatattggaagaagagcctagagtccatataggaatataatttacaagtaactaaaatttgatattaaaaataattaatgactaacacgtatataaaatacaatatgaatattatacattagtagtttcgtaaaggtagtacaaaatttaaaattatgttgtcattttaatatatttgaataatatattaagaaaacatatatgttattatatgacagaaaatataatgatgctagccgcgcaatctgcgcgggtcaccatactagttttattgaaatgattatattacctctcctcgtatgtaagagctaacgtgaaaaacatatataattccctctccaaaacaattttagattaagaatataaaacaaaaattattatatgaccctaaatttagattttgaaatgaattttaagtttgatgaaatttttaatggtatttcaccttcactctccaaggagatctcttcaaatttggtcgatattgtttaaaaattataaaactttggtttcttaagagggaaagcagggaaacaaatatttggtgcaaTTttcctctttaaattttcattaaatttgattaaaaattttaaatttcgatttctcaaacaactcgcttccttcaattaataataactgaagcttccttcaattaataatatagaagggacaagggaggggtagctcttatataggagggagggtagTAtagtaatttaaagaaaatttatcaatcaactcctggtgaactaacgagataagtatggacaggtataagcaaagattcagaggcaccaaaggaattttcttctcatttaattttcaccaacttgctcatctcaactatctctcatttaatttcaccaatatccttaatcttcgtAaaaaaaactctaaaagtactcatattttggaatagaccaTtttgtgcgccttgtgcctgaatgatctagaatttgagatagaattaacgttacttactttatacatgtataataagaaaaAAAGAAAGaaagaaaggcaaccaaaagtcgatcggtttgtgcttaatggctttgttaagcccatcggttaacttgacaccacccaagactatctgatatatatgcaacgctaaaactgatcgaggttaataacgcaacgtggaggccgttcccctgtacctgtcggaggtggcgccggcgaggatccgcggtgggctcaacatcctgttccagctcaacgtcaccatcggcgtcctcttcgccaccctcgtcaactacgccgccaacaagtatgcctctcattagttcttaaagcgtctctaatggtcttatatccgatgcacgtctgggaataatggatactaagttttttttatcctagaaacatttttgactatgtacatctgctttgtggatgtacagaccgggtttttattcactatctaaataataactcgaaacatttgcatcattttcttgcattgagctcaaaatagttgtaaaagtaaacaaaattgataatataaattgtgattctataaataagtacatgagactaaatttgttctgcactcatcagtgaaaataagtacatgagactaaatttgttctgcactccccagagatccggattatccaaattagtagagaagctaataaagtggctcatggattggcccacttagccttacgttgtaagtcctcagctgttttgtcgtctgcaggctccagggaatgtttctgagcttcttgctcaagaatgtaatcttgatatgaattaataaagctccctgtatttgtcgagAaaaaaaaaagaaaatcatggcacagcgcgcatagtacatgcatagcgtaaacaatgttttttttctttctctgcatgtagatcaaatttagatttacacctatcgcctatgggcataagcacataggtgtaaaacaaaactttctcatacatgcacagctaggcgcctagggattgagatcttctgcagttgatcgcaccgcccttttgtcactaacatgtgggctaggtccccgtgacaaagacgcgatgtagtcgactacagatgatcctaatccagcacgtagctagtgataagcgctgacatgactattattgcttgcaggatccatccttGggggtggcggttgtcgctgtcgctaggcagcatgccggcggcgctgttgatcctgtgcacatggttcttggtggacacgcccaacagcctgatccagcgcgggaggcttgaggaggggagggcggcgctgaagaggatccggggcaccgacgacgtcgagccagagttcaatgagatcgtggaggcgagccgcgtggcgcaggaggcgaaaagctcctcgttccgctacctgctccggcgacggagcaaccggccgcagctggtcatcgccgtgcttctccagctgttccagcaggtcgcGgggatcaacgcggtcatgttctacgcgcccgtgctgttcagcacgctggggttcaagaccgagacgtcgctctactcggcggtgatcaccggcggcgtcaacgtgctgtccacgctggtgtccgtctactcggtggaccgggcggggcggcggatgctgctgctggagggcggcgtgtacatgctcctctcgctcatggccattgccatcgtgttccgcatcaaggtgacggatagctccgacgaccttggccatgactgggccatcttggtggtcgccatggtctgcaccttcgtcttctccttcgcctggtcatggggcccgctcgcttggctcatCcccagcgagaccttcccgcttgagactcgctctgcggggcagagcgtcaccgtctgcgtcaacatgctcttcaccttcgtcttcgcgcagaccttcctctccatcctttgccgcctcaaatacaccatcttcgccttcttctccgtgtgtgtcgtcgtcatgtcactcttcgtcctcgtcttcctccctgagaccaagaacgtgcccatcgaggagatgaaggagagggtctggaagcaacactggttttggaagcgctttctcgacgatgatgacaaccaccatgtcatcgtcaatggtggaaagagcaagtgagccaatttagatttattttcatgtcaaatccggtgttgtatatatgcaaaatcaaatcaagagcgtgtaaaaatacaatatgcattattctcaaattaaaagttccaactcaggaagttaatga
More
|
||||||||||
| CDS seq | atgccggcgggagggttCtccgtgtcgccagcgtcgccgCccggcacggagttcgaggcgaagatcacggcggccgtggtcgtctcctgcgtcatggcggccaccggcggcctcatattcggctacgacatcggcatcgcaggcggcgtgacggcgatggacgacttcctgcgcgagttcttcccggcggtgctggagaagaagacgcgcacgcgcgaggtgaaggagacgacgaccagcaactactgcaagtacgacgaccagggcctgcagctcttcacctcgtcgatctacctcgccgccctcgtcgccaccttgttcgcctcctacaccacccgccgcctcggccgccgcctcaccatgctcgtcgccggcgtcctcttcaccgtcggcgccatcctcaacggcgccgcccggaacctcgccacgctcgtcgccggcaggatcctgctcggctgcgccgccgttcccctgtacctgtcggaggtggcgccggcgaggatccgcggtgggctcaacatcctgttccagctcaacgtcaccatcggcgtcctcttcgccaccctcgtcaactacgccgccaacaacatgccggcggcgctgttgatcctgtgcacatggttcttggtggacacgcccaacagcctgatccagcgcgggaggcttgaggaggggagggcggcgctgaagaggatccggggcaccgacgacgtcgagccagagttcaatgagatcgtggaggcgagccgcgtggcgcaggaggcgaaaagctcctcgttccgctacctgctccggcgacggagcaaccggccgcagctggtcatcgccgtgcttctccagctgttccagcaggtcgcGgggatcaacgcggtcatgttctacgcgcccgtgctgttcagcacgctggggttcaagaccgagacgtcgctctactcggcggtgatcaccggcggcgtcaacgtgctgtccacgctggtgtccgtctactcggtggaccgggcggggcggcggatgctgctgctggagggcggcgtgtacatgctcctctcgctcatggccattgccatcgtgttccgcatcaaggtgacggatagctccgacgaccttggccatgactgggccatcttggtggtcgccatggtctgcaccttcgtcttctccttcgcctggtcatggggcccgctcgcttggctcatCcccagcgagaccttcccgcttgagactcgctctgcggggcagagcgtcaccgtctgcgtcaacatgctcttcaccttcgtcttcgcgcagaccttcctctccatcctttgccgcctcaaatacaccatcttcgccttcttctccgtgtgtgtcgtcgtcatgtcactcttcgtcctcgtcttcctccctgagaccaagaacgtgcccatcgaggagatgaaggagagggtctggaagcaacactggttttggaagcgctttctcgacgatgatgacaaccaccatgtcatcgtcaatggtggaaagagcaagtga
More
|
||||||||||
| Protein seq | MPAGGFSVSPASPPGTEFEAKITAAVVVSCVMAATGGLIFGYDIGIAGGVTAMDDFLREFFPAVLEKKTRTREVKETTTSNYCKYDDQGLQLFTSSIYLAALVATLFASYTTRRLGRRLTMLVAGVLFTVGAILNGAARNLATLVAGRILLGCAAVPLYLSEVAPARIRGGLNILFQLNVTIGVLFATLVNYAANNMPAALLILCTWFLVDTPNSLIQRGRLEEGRAALKRIRGTDDVEPEFNEIVEASRVAQEAKSSSFRYLLRRRSNRPQLVIAVLLQLFQQVAGINAVMFYAPVLFSTLGFKTETSLYSAVITGGVNVLSTLVSVYSVDRAGRRMLLLEGGVYMLLSLMAIAIVFRIKVTDSSDDLGHDWAILVVAMVCTFVFSFAWSWGPLAWLIPSETFPLETRSAGQSVTVCVNMLFTFVFAQTFLSILCRLKYTIFAFFSVCVVVMSLFVLVFLPETKNVPIEEMKERVWKQHWFWKRFLDDDDNHHVIVNGGKSK |
||||||||||
| Function | Sugar transport protein MST4 [UniProtKB/Swiss-Prot:Q10PW9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0023190 | OsKeNa_11g0023190.01 | Chr11 | 28106294 | 28112033 | + | NAM | ||
| CDS seq | atgccggcgggagggttCtccgtgtcgccagcgtcgccgCccggcacggagttcgaggcgaagatcacggcggccgtggtcgtctcctgcgtcatggcggccaccggcggcctcatattcggctacgacatcggcatcgcaggcggcgtgacggcgatggacgacttcctgcgcgagttcttcccggcggtgctggagaagaagacgcgcacgcgcgaggtgaaggagacgacgaccagcaactactgcaagtacgacgaccagggcctgcagctcttcacctcgtcgatctacctcgccgccctcgtcgccaccttgttcgcctcctacaccacccgccgcctcggccgccgcctcaccatgctcgtcgccggcgtcctcttcaccgtcggcgccatcctcaacggcgccgcccggaacctcgccacgctcgtcgccggcaggatcctgctcggctgcgccgccgttcccctgtacctgtcggaggtggcgccggcgaggatccgcggtgggctcaacatcctgttccagctcaacgtcaccatcggcgtcctcttcgccaccctcgtcaactacgccgccaacaacatgccggcggcgctgttgatcctgtgcacatggttcttggtggacacgcccaacagcctgatccagcgcgggaggcttgaggaggggagggcggcgctgaagaggatccggggcaccgacgacgtcgagccagagttcaatgagatcgtggaggcgagccgcgtggcgcaggaggcgaaaagctcctcgttccgctacctgctccggcgacggagcaaccggccgcagctggtcatcgccgtgcttctccagctgttccagcaggtcgcGgggatcaacgcggtcatgttctacgcgcccgtgctgttcagcacgctggggttcaagaccgagacgtcgctctactcggcggtgatcaccggcggcgtcaacgtgctgtccacgctggtgtccgtctactcggtggaccgggcggggcggcggatgctgctgctggagggcggcgtgtacatgctcctctcgctcatggccattgccatcgtgttccgcatcaaggtgacggatagctccgacgaccttggccatgactgggccatcttggtggtcgccatggtctgcaccttcgtcttctccttcgcctggtcatggggcccgctcgcttggctcatCcccagcgagaccttcccgcttgagactcgctctgcggggcagagcgtcaccgtctgcgtcaacatgctcttcaccttcgtcttcgcgcagaccttcctctccatcctttgccgcctcaaatacaccatcttcgccttcttctccgtgtgtgtcgtcgtcatgtcactcttcgtcctcgtcttcctccctgagaccaagaacgtgcccatcgaggagatgaaggagagggtctggaagcaacactggttttggaagcgctttctcgacgatgatgacaaccaccatgtcatcgtcaatggtggaaagagcaagtga
More
|
|||||||
| Protein seq | MPAGGFSVSPASPPGTEFEAKITAAVVVSCVMAATGGLIFGYDIGIAGGVTAMDDFLREFFPAVLEKKTRTREVKETTTSNYCKYDDQGLQLFTSSIYLAALVATLFASYTTRRLGRRLTMLVAGVLFTVGAILNGAARNLATLVAGRILLGCAAVPLYLSEVAPARIRGGLNILFQLNVTIGVLFATLVNYAANNMPAALLILCTWFLVDTPNSLIQRGRLEEGRAALKRIRGTDDVEPEFNEIVEASRVAQEAKSSSFRYLLRRRSNRPQLVIAVLLQLFQQVAGINAVMFYAPVLFSTLGFKTETSLYSAVITGGVNVLSTLVSVYSVDRAGRRMLLLEGGVYMLLSLMAIAIVFRIKVTDSSDDLGHDWAILVVAMVCTFVFSFAWSWGPLAWLIPSETFPLETRSAGQSVTVCVNMLFTFVFAQTFLSILCRLKYTIFAFFSVCVVVMSLFVLVFLPETKNVPIEEMKERVWKQHWFWKRFLDDDDNHHVIVNGGKSK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0023190 | OsKeNa_11g0023190.02 | Chr11 | 28111640 | 28112157 | + | IsoSeq | ||
| CDS seq | ccatcttggtggtcgccatggtctgcaccttcgtcttctccttcgcctggtcatggggcccgctcgcttggctcatCcccagcgagaccttcccgcttgagactcgctctgcggggcagagcgtcaccgtctgcgtcaacatgctcttcaccttcgtcttcgcgcagaccttcctctccatcctttgccgcctcaaatacaccatcttcgccttcttctccgtgtgtgtcgtcgtcatgtcactcttcgtcctcgtcttcctccctgagaccaagaacgtgcccatcgagg
More
|
|||||||
| Protein seq | PSWWSPWSAPSSSPSPGHGARSLGSSPARPSRLRLALRGRASPSASTCSSPSSSRRPSSPSFAASNTPSSPSSPCVSSSCHSSSSSSSLRPRTCPSR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.197088 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0594000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38160 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0594000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023220 | RBH | 0.0 | 0.0 | 1.134706 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022830 | RBH | 0.0 | 1.253209 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022790 | RBH | 2.093034 | 0.0 | 1.635827 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0406500 | RBH | 0.248178 | 1.836681 | 1.3062415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019610 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0424300 | RBH | 0.716266 | 7.009023 | 0.0200645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019040 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018720 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023010 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023420 | RBH | 0.000000 | 0.0 | 0.312500 |
