Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0019600 | OGI:11067790 | 6/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:25404544-25405094 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaCccgtagtattcatcaactaccaccgtaggtctgttgggatgcaagctgactgaacttctgatatcagacacctgcaccttggtagtttcaggagcttgctggctaactCtaagAagcacctgctggaggctagctaggTtttccacaccatgagcaccttccAagatcctaaaccgcagctCcagccTctgtagcttcggcatcgcgccatcaaggaagcttaGcagtggcagtaacggtgccgagaaacggagcagctggaggctgtgaaatCcgtcagaagggatgaggattttcccCcctgaattcatcgtgttcTtcgtcaggatctccatgaCaccgtggtcctggcttgctgcactgaccgaaaacgcaagggagaagagcaaagttgggcaatgataaacaaagcAtctgtgctcagtgatgtcaatgataaagtcaatttctccaggttttgtagctcactgatccaTttaggcaccctgggtagtTcgcctgaaagctcgagTgtgtggatgtattttggagtggatagagaatccat
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| CDS seq | atggattctctatccactccaaaatacatccacacActcgagctttcaggcgAactacccagggtgcctaaAtggatcagtgagctacaaaacctggagaaattgactttatcattgacatcactgagcacagaTgctttgtttatcattgcccaactttgctcttctcccttgcgttttcgtgcagcaagccaggaccacggtGtcatggagatcctgacgaAgaacacgatgaattcaggGgggaaaatcctcatcccttctgacgGatttcacagcctccagctgctccgtttctcggcaccgttactgccactgCtaagcttccttgatggcgcgatgccgaagctacagAggctgGagctgcggtttaggatctTggaaggtgctcatggtgtggaaaAcctagctagcctccagcaggtgctTcttaGagttagccagcaagctcctgaaactaccaaggtgcaggtgtctgatatcagaagttcagtcagcttgcatcccaacagacctacggtggtagttgatgaatactacggGtga
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| Protein seq | MDSLSTPKYIHTLELSGELPRVPKWISELQNLEKLTLSLTSLSTDALFIIAQLCSSPLRFRAASQDHGVMEILTKNTMNSGGKILIPSDGFHSLQLLRFSAPLLPLLSFLDGAMPKLQRLELRFRILEGAHGVENLASLQQVLLRVSQQAPETTKVQVSDIRSSVSLHPNRPTVVVDEYYG |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0019600 | OsLaMu_11g0019600.01 | Chr11 | 25404544 | 25405094 | - | NAM | ||
| CDS seq | atggattctctatccactccaaaatacatccacacActcgagctttcaggcgAactacccagggtgcctaaAtggatcagtgagctacaaaacctggagaaattgactttatcattgacatcactgagcacagaTgctttgtttatcattgcccaactttgctcttctcccttgcgttttcgtgcagcaagccaggaccacggtGtcatggagatcctgacgaAgaacacgatgaattcaggGgggaaaatcctcatcccttctgacgGatttcacagcctccagctgctccgtttctcggcaccgttactgccactgCtaagcttccttgatggcgcgatgccgaagctacagAggctgGagctgcggtttaggatctTggaaggtgctcatggtgtggaaaAcctagctagcctccagcaggtgctTcttaGagttagccagcaagctcctgaaactaccaaggtgcaggtgtctgatatcagaagttcagtcagcttgcatcccaacagacctacggtggtagttgatgaatactacggGtga
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| Protein seq | MDSLSTPKYIHTLELSGELPRVPKWISELQNLEKLTLSLTSLSTDALFIIAQLCSSPLRFRAASQDHGVMEILTKNTMNSGGKILIPSDGFHSLQLLRFSAPLLPLLSFLDGAMPKLQRLELRFRILEGAHGVENLASLQQVLLRVSQQAPETTKVQVSDIRSSVSLHPNRPTVVVDEYYG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0605600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0605600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019930 | RBH | 0.0 | 0.0 | 0.520474 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019690 | SBH | 0.0 | 5.772852 | 4.157660 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019280 | SBH | 0.000000 | 0.042257 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019780 | SBH | 0.000000 | 13.340145 | 5.072038 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0356500 | RBH | 0 | 1.3668515 | 0.0147795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020240 | SBH | 0.000000 | 0.588899 | 0.410910 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0372600 | SBH | 4.088419 | 0.0735415 | 1.3815125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020250 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019700 | SBH | 0.0 | 24.861574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019500 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019830 | SBH | 0.000000 | 2.938492 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019980 | RBH | 0.0 | 0.0 | 0.0 |
