Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_11g0019540 OGI:11067710 | 5/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr11:25339814-25344922
Gene Symbol -
DNA seq

ctattgtttgttatataattcgttgtactcatctatcaccacactaatgttggaggaatcagcctttcgaatcttgcttgccagtcctttgatctgggagatcttctctttcgcatcttcaggtgcctggctgctaaaggtcagaaatacctgttggagacttgaaaggttttctaggccgtatacacactcaatgattctgaacctcagctcaagcctctgaagctctggcattgccccttctaggaagctcagaggtggtagcactggtgccgtaaaacgcagcaacctcagctttgtaaaCcccccatccggcacaaagattttacctcctgactccaatgtattcttatgcacagttttgaggatatttgaaatatcctttgctgcatcaagtgaaaaaatgagagagaaaagctcaggaagcctactaagagtcaccaaagtatgtgtcgtaagtgaagtcaaggacagagtaagcttctcaaggttatgcaagcggtcaatccattctggcactttaaacaagctgccagaaagctcaagggtgtaaaggtgttctggtggtgcttgtgaagaactcagtgacctgtaaaggaagcccgtgaaattgtcatcaactacaagaaacttgagagaacaactgctcaaatgttcaatagcagagagcagcaattcatcatctttcacagtgaacttaacaatcctgtaaatggcaagtttgttaaggttggtgagcttctccaaggctgctagcggacgcaattgttttggcatatccaccttgctgccttccttactggtaccttgcaagcccgtgatatctccatcttcggcataccttaaagcatttctgatgatccccgcaaacgtggctaaacttccagagatctcaatcccagacagtgtctgtatagttgtcatctttgtgattccttcagttaatctcaatgctctccgcttggttttattgccagccaatagatgggccattcgttgaagcctctccactgatggaggcaagtttgtcacattcgtatcccttatgtcaagtacctccaaatactccagcttgcctattttcttcggtatcttgtggatgtccgtcccacgcaagcttaggtacttcatctgatgcatattacataTttttttgagctggtttgatgacaagtccttgcatccttcaagatccaacacctgcagtatctggaatttgagcatattagaatgaagagctttgaaactctccaacacagtcaaggatcgtacatgcgacaacttcatcctctctactaactcagtttcttgccgatcacttttatggacagacaaccgtcgaaccttgtagcttggaaatggtgtctgccagtggctaccaataacagtgatgaaattctcctcaccagatttggagacaatgtactcaaggaccatgtcatgaatttgacagctcttcaccttcccattgctgctgttgttgataggccgaatcaagttcctgccaatgagttcattgaagttgtcttctgcaacttcttctgccgtctgcccatgtttctcagtaacgaacccttcagcaatccatcttcttatcaaacatttcctgctaatattgcggcccttcggaaacgtactcaagtagagcaaacatgtcttaaggtcaggtggcagatttttgtagcagtggttaattatccgcactacttcagtggtgagattgtttcccaactctgcacttaaagccttctccacttcaatcaatttctgatccaacgtctttccaatctttgatttcagttcactagcaatgagccctgatactactactatggccaaaggcagacaaccacacatcttcacgacaatctcatcattaatggttcgagtgggacacagaccgttagcagatattatttgaagaaacaatttgttggagttctctggatctagctgtttgagcttgtgcacatgaccattttgacggcggcaggcttcagctacagagttaaacctggtagtcacaattacgcaactacccttatcattcttaggtaatgaatccctaatactttcccatgctgatacagaccatatgtcatcaatcaagatatggtacctgttcaagaattgtttagaagtaagtagttgtaaatagagtgtgcttttaaggtagttgtaattgtaaatagagtgtgattttacggtacttgagaaggtaccgtaaagttcctctctaaataatattttatactaccttcttagtttaatatttttatggggaatatcttcctttaatatttgaacttaaaagaacgaagggagtagtactcatcccaggcacaaaacatattgccaaacattttcaacttgggtatcaatattttttccctattatattctgcataaagttattggactttataaatactagAaaaaagatgcccgtgcgttgcaacgggaaacactaacgttattaacttagtaaaataatAaaaaaatgagctcttatgatctagaaattcacatgttaaaaaataaggagaactcattgtagaccaggactctttcattttgtttttttttttaaatcgcattgcccaatcgaatatgtacatAaaacaacttaatataaagtataaattataaattagaaaataaataatattggatgaggactctagaatattctccaaaagaggctagggtgcatataggaatacaatttagaaaaagaattaaaattcaatatacaaaatattgaaagaagagtttagagttcatatatagaaatacaattagaaacaataaaaaaataggaatatttgaagaagaatagagaccatatagaattAaaaaataattgatattatttaattttagtctaaatttaaattttgtatcacgacaaataaataattatatttttagtcagaaaataaatccatatcatgaggaaaacaatttagttagaattAaaataataagtagtcataagcaattataatgggcccttttatggcctaatgggctaataggcctatagaaccaacgagccatcaagcccagtaggcagaatagactggaggcccaatagtgtggcggcccgatgaaggagaagccggggccgtccgatcgaatggacggtccaaattgatcccaaactatatatatactctgcagcaatccctaaccctaaaaattcattttccccctctctccgcGcctctaatCccctcccccccccCAccccaacacacacacacgagcggctgctgtggcgccctcgatcccctgtctctgaaagcgacagcggcgccctcctcccccctCcccgagcggctgcggcagcacttagctgcagccggcgagcagtgacgggctgcggcgcctctccacccctcgcctcctctccctctccatggggccacggcccacgggagggctcgaccgtggcgggcGgtggtaggcggcggcgctctccccaggaaggaagccgacggcggcctggagtccctgcgacggcgacagcggcagcaacctccttcgatctaatttttggatatatttgggtatatgctttctccaattttatttgtatgactgaattttgaTtgggatttttttttagggggggtggattgaattctgattgggatttggggggttgcgacggacgaaaaatttgcgtacgtttgaggtaacgaacggaaaaatacgaatcttttaattagttaagatatacaataaaaatgttgttgaaaagttgtgttttgtagactatttgtatccaaaacgactgttacctgtgaacggtgaaagtacaatttatccagatcagtaactatcataattcaaattcggtattgctatttaattactaaaaacttgtgtgagacttatccaaagataagttcaagtgctaaaCcagaaaagtcaaggAaaactatgaaggaatgaaataaatactctgtattactccctccatccctaaatatttgacaccgttgactttttagcatatgtttgactgtaagttcttattaaaaacttttgtgaaatatgtataactatatgtatatataaaagtatttttAacaatgaatcaaataatagaaaaagaattaataattacttaaatttgtcgaataagacgaactcaaatatattttaaaaaaatcaacggtgttaaatatttagagacggagggagtatatagtaacaaagccaaaatctatacctcttgccttctagttgatcagctagcttcttcttgagctcttcaactccccattcctcaattccttggagagcatcctgaGaagcgccgacctgcttctcatggaactggctaacaaggcttcttagaactgttgggagacgaaacttctgcgacgcgagcatgaacgctctggaattaaactcatctccaaacttgcggtaaaatgacattgcgagtgtggttttgccaagcccaccggatccgacaatggcaaggtaactgatttggctctgctgctggctgttgtgcttcgagaccatgaaccatctttgaaggtcgttcatggcgtcctccatgcctacaggttcaacggtgccaatcagccGggggagagaaactggatggtctctGggatcgccggagttgttgttgcctccaccatttgcgtttgctgggaggttctccaccccgtacctcgtgcgccgctcgctgacatgctgcgccctgaccttgaggttgccgatgtcggcggcgatgcagcggcgctggtacagcgtggtgagcaggtaccaagccctccggagggtgactagcttgccggccccacggggctcgcggccgaggcggtggctgacgtcgtcgacacagtcctcgatgtcgtaggcgacctcgcgcacctgcttcatccagtcctgccgctgctcgtcgtggttgatgtcccgcttgagcctattgaggaaggcctgcatgctggcgagctcgtcgttgatgtactggatgtcgtcgtggacgccggagatgagggtgtactcctgcgcgaggaggctgcccagcttgttgacgagggacttcacggcgccgctcgaggcgccgacgaccagatccat

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CDS seq

atggatctggtcgtcggcgcctcgagcggcgccgtgaagtccctcgtcaacaagctgggcagcctcctcgcgcaggagtacaccctcatctccggcgtccacgacgacatccagtacatcaacgacgagctcgccagcatgcaggccttcctcaataggctcaagcgggacatcaaccacgacgagcagcggcaggactggatgaagcaggtgcgcgaggtcgcctacgacatcgaggactgtgtcgacgacgtcagccaccgcctcggccgcgagccccgtggggccggcaagctagtcaccctccggagggcttggtacctgctcaccacgctgtaccagcgccgctgcatcgccgccgacatcggcaacctcaaggtcagggcgcagcatgtcagcgagcggcgcacgaggtacggggtggagaacctcccagcaaacgcaaatggtggaggcaacaacaactccggcgatccCagagaccatccagtttctctccccCggctgattggcaccgttgaacctgtaggcatggaggacgccatgaacgaccttcaaagatggttcatggtctcgaagcacaacagccagcagcagagccaaatcagttaccttgccattgtcggatccggtgggcttggcaaaaccacactcgcaatgtcattttaccgcaagtttggagatgagtttaattccagagcgttcatgctcgcgtcgcagaagtttcgtctcccaacagttctaagaagccttgttagccagttccatgagaagcaggtcggcgcttCtcaggatgctctccaaggaattgaggaatggggaaatgataagggtagttgcgtaattgtgactaccaggtttaactctgtagctgaagcctgccgccgtcaaaatggtcatgtgcacaagctcaaacagctagatccagagaactccaacaaattgtttcttcaaataatatctgctaacggtctgtgtcccactcgaaccattaatgatgagattgtcgtgaagatgtgtggttgtctgcctttggccatagtagtagtatcagggctcattgctagtgaactgaaatcaaagattggaaagacgttggatcagaaattgattgaagtggagaaggctttaagtgcagagttgggaaacaatctcaccactgaagtagtgcggataattaaccactgctacaaaaatctgccacctgaccttaagacatgtttgctctacttgagtacgtttccgaagggccgcaatattagcaggaaatgtttgataagaagatggattgctgaagggttcgttactgagaaacatgggcagacggcagaagaagttgcagaagacaacttcaatgaactcattggcaggaacttgattcggcctatcaacaacagcagcaatgggaaggtgaagagctgtcaaattcatgacatggtccttgagtacattgtctccaaatctggtgaggagaatttcatcactgttattggtagccactggcagacaccatttccaagctacaaggttcgacggttgtctgtccataaaagtgatcggcaagaaactgagttagtagagaggatgaagttgtcgcatgtacgatccttgactgtgttggagagtttcaaagctcttcattctaatatgctcaaattccagatactgcaggtgttggatcttgaaggatgcaaggacttgtcatcaaaccagctcaaaaaaAtatgtaatatgcatcagatgaagtacctaagcttgcgtgggacggacatccacaagataccgaagaaaataggcaagctggagtatttggaggtacttgacataagggatacgaatgtgacaaacttgcctccatcagtggagaggcttcaacgaatggcccatctattggctggcaataaaaccaagcggagagcattgagattaactgaaggaatcacaaagatgacaactatacagacactgtctgggattgagatctctggaagtttagccacgtttgcggggatcatcagaaatgctttaaggtatgccgaagatggagatatcacgggcttgcaaggtaccagtaaggaaggcagcaaggtggatatgccaaaacaattgcgtccgctagcagccttggagaagctcaccaaccttaacaaacttgccatttacaggattgttaagttcactgtgaaagatgatgaattgctgctctctgctattgaacatttgagcagttgttctctcaagtttcttgtagttgatgacaatttcacgggcttcctttacaggtcactgagttcttcacaagcaccaccagaacacctttacacccttgagctttctggcagcttgtttaaagtgccagaatggattgaccgcttgcataaccttgagaagcttactctgtccttgacttcacttacgacacatactttggtgactcttagtaggcttcctgagcttttctctctcattttttcacttgatgcagcaaaggatatttcaaatatcctcaaaactgtgcataagaatacattggagtcaggaggtaaaatctttgtgccggatgggggGtttacaaagctgaggttgctgcgttttacggcaccagtgctaccacctctgagcttcctagaaggggcaatgccagagcttcagaggcttgagctgaggttcagaatcattgagtgtgtatacggcctagaaaacctttcaagtctccaacaggtatttctgacctttagcagccaggcacctgaagatgcgaaagagaagatctcccagatcaaaggactggcaagcaagattcgaaaggctgattcctccaacattagtgtggtgatagatgagtacaacgaattatataacaaacaatag

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Protein seq

MDLVVGASSGAVKSLVNKLGSLLAQEYTLISGVHDDIQYINDELASMQAFLNRLKRDINHDEQRQDWMKQVREVAYDIEDCVDDVSHRLGREPRGAGKLVTLRRAWYLLTTLYQRRCIAADIGNLKVRAQHVSERRTRYGVENLPANANGGGNNNSGDPRDHPVSLPRLIGTVEPVGMEDAMNDLQRWFMVSKHNSQQQSQISYLAIVGSGGLGKTTLAMSFYRKFGDEFNSRAFMLASQKFRLPTVLRSLVSQFHEKQVGASQDALQGIEEWGNDKGSCVIVTTRFNSVAEACRRQNGHVHKLKQLDPENSNKLFLQIISANGLCPTRTINDEIVVKMCGCLPLAIVVVSGLIASELKSKIGKTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDLKTCLLYLSTFPKGRNISRKCLIRRWIAEGFVTEKHGQTAEEVAEDNFNELIGRNLIRPINNSSNGKVKSCQIHDMVLEYIVSKSGEENFITVIGSHWQTPFPSYKVRRLSVHKSDRQETELVERMKLSHVRSLTVLESFKALHSNMLKFQILQVLDLEGCKDLSSNQLKKICNMHQMKYLSLRGTDIHKIPKKIGKLEYLEVLDIRDTNVTNLPPSVERLQRMAHLLAGNKTKRRALRLTEGITKMTTIQTLSGIEISGSLATFAGIIRNALRYAEDGDITGLQGTSKEGSKVDMPKQLRPLAALEKLTNLNKLAIYRIVKFTVKDDELLLSAIEHLSSCSLKFLVVDDNFTGFLYRSLSSSQAPPEHLYTLELSGSLFKVPEWIDRLHNLEKLTLSLTSLTTHTLVTLSRLPELFSLIFSLDAAKDISNILKTVHKNTLESGGKIFVPDGGFTKLRLLRFTAPVLPPLSFLEGAMPELQRLELRFRIIECVYGLENLSSLQQVFLTFSSQAPEDAKEKISQIKGLASKIRKADSSNISVVIDEYNELYNKQ

Function Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_11g0019540 OsLaMu_11g0019540.01 Chr11 25339814 25344922 - NAM
CDS seq

atggatctggtcgtcggcgcctcgagcggcgccgtgaagtccctcgtcaacaagctgggcagcctcctcgcgcaggagtacaccctcatctccggcgtccacgacgacatccagtacatcaacgacgagctcgccagcatgcaggccttcctcaataggctcaagcgggacatcaaccacgacgagcagcggcaggactggatgaagcaggtgcgcgaggtcgcctacgacatcgaggactgtgtcgacgacgtcagccaccgcctcggccgcgagccccgtggggccggcaagctagtcaccctccggagggcttggtacctgctcaccacgctgtaccagcgccgctgcatcgccgccgacatcggcaacctcaaggtcagggcgcagcatgtcagcgagcggcgcacgaggtacggggtggagaacctcccagcaaacgcaaatggtggaggcaacaacaactccggcgatccCagagaccatccagtttctctccccCggctgattggcaccgttgaacctgtaggcatggaggacgccatgaacgaccttcaaagatggttcatggtctcgaagcacaacagccagcagcagagccaaatcagttaccttgccattgtcggatccggtgggcttggcaaaaccacactcgcaatgtcattttaccgcaagtttggagatgagtttaattccagagcgttcatgctcgcgtcgcagaagtttcgtctcccaacagttctaagaagccttgttagccagttccatgagaagcaggtcggcgcttCtcaggatgctctccaaggaattgaggaatggggaaatgataagggtagttgcgtaattgtgactaccaggtttaactctgtagctgaagcctgccgccgtcaaaatggtcatgtgcacaagctcaaacagctagatccagagaactccaacaaattgtttcttcaaataatatctgctaacggtctgtgtcccactcgaaccattaatgatgagattgtcgtgaagatgtgtggttgtctgcctttggccatagtagtagtatcagggctcattgctagtgaactgaaatcaaagattggaaagacgttggatcagaaattgattgaagtggagaaggctttaagtgcagagttgggaaacaatctcaccactgaagtagtgcggataattaaccactgctacaaaaatctgccacctgaccttaagacatgtttgctctacttgagtacgtttccgaagggccgcaatattagcaggaaatgtttgataagaagatggattgctgaagggttcgttactgagaaacatgggcagacggcagaagaagttgcagaagacaacttcaatgaactcattggcaggaacttgattcggcctatcaacaacagcagcaatgggaaggtgaagagctgtcaaattcatgacatggtccttgagtacattgtctccaaatctggtgaggagaatttcatcactgttattggtagccactggcagacaccatttccaagctacaaggttcgacggttgtctgtccataaaagtgatcggcaagaaactgagttagtagagaggatgaagttgtcgcatgtacgatccttgactgtgttggagagtttcaaagctcttcattctaatatgctcaaattccagatactgcaggtgttggatcttgaaggatgcaaggacttgtcatcaaaccagctcaaaaaaAtatgtaatatgcatcagatgaagtacctaagcttgcgtgggacggacatccacaagataccgaagaaaataggcaagctggagtatttggaggtacttgacataagggatacgaatgtgacaaacttgcctccatcagtggagaggcttcaacgaatggcccatctattggctggcaataaaaccaagcggagagcattgagattaactgaaggaatcacaaagatgacaactatacagacactgtctgggattgagatctctggaagtttagccacgtttgcggggatcatcagaaatgctttaaggtatgccgaagatggagatatcacgggcttgcaaggtaccagtaaggaaggcagcaaggtggatatgccaaaacaattgcgtccgctagcagccttggagaagctcaccaaccttaacaaacttgccatttacaggattgttaagttcactgtgaaagatgatgaattgctgctctctgctattgaacatttgagcagttgttctctcaagtttcttgtagttgatgacaatttcacgggcttcctttacaggtcactgagttcttcacaagcaccaccagaacacctttacacccttgagctttctggcagcttgtttaaagtgccagaatggattgaccgcttgcataaccttgagaagcttactctgtccttgacttcacttacgacacatactttggtgactcttagtaggcttcctgagcttttctctctcattttttcacttgatgcagcaaaggatatttcaaatatcctcaaaactgtgcataagaatacattggagtcaggaggtaaaatctttgtgccggatgggggGtttacaaagctgaggttgctgcgttttacggcaccagtgctaccacctctgagcttcctagaaggggcaatgccagagcttcagaggcttgagctgaggttcagaatcattgagtgtgtatacggcctagaaaacctttcaagtctccaacaggtatttctgacctttagcagccaggcacctgaagatgcgaaagagaagatctcccagatcaaaggactggcaagcaagattcgaaaggctgattcctccaacattagtgtggtgatagatgagtacaacgaattatataacaaacaatag

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Protein seq

MDLVVGASSGAVKSLVNKLGSLLAQEYTLISGVHDDIQYINDELASMQAFLNRLKRDINHDEQRQDWMKQVREVAYDIEDCVDDVSHRLGREPRGAGKLVTLRRAWYLLTTLYQRRCIAADIGNLKVRAQHVSERRTRYGVENLPANANGGGNNNSGDPRDHPVSLPRLIGTVEPVGMEDAMNDLQRWFMVSKHNSQQQSQISYLAIVGSGGLGKTTLAMSFYRKFGDEFNSRAFMLASQKFRLPTVLRSLVSQFHEKQVGASQDALQGIEEWGNDKGSCVIVTTRFNSVAEACRRQNGHVHKLKQLDPENSNKLFLQIISANGLCPTRTINDEIVVKMCGCLPLAIVVVSGLIASELKSKIGKTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDLKTCLLYLSTFPKGRNISRKCLIRRWIAEGFVTEKHGQTAEEVAEDNFNELIGRNLIRPINNSSNGKVKSCQIHDMVLEYIVSKSGEENFITVIGSHWQTPFPSYKVRRLSVHKSDRQETELVERMKLSHVRSLTVLESFKALHSNMLKFQILQVLDLEGCKDLSSNQLKKICNMHQMKYLSLRGTDIHKIPKKIGKLEYLEVLDIRDTNVTNLPPSVERLQRMAHLLAGNKTKRRALRLTEGITKMTTIQTLSGIEISGSLATFAGIIRNALRYAEDGDITGLQGTSKEGSKVDMPKQLRPLAALEKLTNLNKLAIYRIVKFTVKDDELLLSAIEHLSSCSLKFLVVDDNFTGFLYRSLSSSQAPPEHLYTLELSGSLFKVPEWIDRLHNLEKLTLSLTSLTTHTLVTLSRLPELFSLIFSLDAAKDISNILKTVHKNTLESGGKIFVPDGGFTKLRLLRFTAPVLPPLSFLEGAMPELQRLELRFRIIECVYGLENLSSLQQVFLTFSSQAPEDAKEKISQIKGLASKIRKADSSNISVVIDEYNELYNKQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.633373 2.948855 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0604900 RBH 0.163145 0.0 0.599114
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g39160 SBH 0.092575 0.0 0.128549
Nipponbare | IRGSP 1.0 | RAP-db Os11g0604900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0019700 RBH 0.582194 4.723085 0.774617
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0020130 SBH 0.192725 0.349838 1.851197
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0019900 SBH 0.503698 2.298413 5.397541
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0019280 SBH 0.000000 0.042257 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0019820 SBH 1.352501 0.997465 2.008775
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0359000 SBH 3.631289 6.2978845 3.2944695
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0020440 SBH 0.177432 0.000000 0.338771
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0371400 SBH 2.725357 2.697333 1.9244595
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0020270 SBH 0.134517 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0020290 SBH 0.023861 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0019910 SBH 0.000000 9.613651 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0019440 RBH 1.043732 0.0 0.104745
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0019830 RBH 0.000000 2.938492 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G019760 SBH 0.053878 0.764113 0.759471
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0020150 SBH 0.750866 5.503851 2.506739
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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