Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0015850 | OGI:10048420 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:20743846-20744515 | ||||||||
| Gene Symbol | PPR1, PPR794, PPR6, PPR6-794, PPR5, Rf5, Rf1a, RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6 | ||||||||||
| DNA seq | tgttaggcaagatatcaacaggaggaccatcaaaaggggcaaaaggtgtcggattattggaagaacttcCATCTCTGAGTGTCCTAGTTCAAAGCCTCGAAGCAATCTCTGTCAGGGCTCCTCTTGCAATAGCTGGAAGCCCAGCAACCTGAAAGCTTGGAACAAATGTAAAAGCACAATGAAATGTTAACAAGTAAAAGCTGCAGTTATAAAAGTAATATATGGATCTCTGGTGTAGGTATGGCCAAATAAATTACCTGCACAAGCTCCTCATCAAAAGACAGGTACTTAGGTTTATCTGCTTTTGAGTAGACTGGGATTTCAGCCCCCAGTCCGTCTTCTCATTTCAGTAATTACCTTTCCACCTTCCCCATGAATACAACCTTGTTTGATGGTACAACAAGCCGTGTTGTCAACTGGTGGTTCTCAGCAAGTGTACTTACTTTACCACGGAGCAAAATAAGCGCCTCAATTGTTGGAGACACTGGATCATCTGGAATCTGGAAAGAATATGTAGGAAGATATAAAATTGTAAAGACTCGTGATAAAAATGGCAAGGCAATGACAATTGGAATAATCATCTGCATATTACCTCCTGAGATGAAACAACAATTAACCTTTCTTCAGAAGCATTTTTGCCAACTTCTTTAACCTGAACGCAAGCACCTGT
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| CDS seq | ACAGGTGCTTGCGTTCAGGTTAAAGAAGTTGGCAAAAATGCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCGTGGTAAAGTAAGTACACTTGCTGAGAACCACCAGTTGACAACACGGCTTGTTGTACCATCAAACAAGGTTGTATTCATGGGGAAGGTGGAAAGGTTGCTGGGCTTCCAGCTATTGCAAGAGGAGCCCTGA |
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| Protein seq | TGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLRGKVSTLAENHQLTTRLVVPSNKVVFMGKVERLLGFQLLQEEP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0015850 | OsLaMu_10g0015850.01 | Chr10 | 20743846 | 20744515 | - | NAM | ||
| CDS seq | ACAGGTGCTTGCGTTCAGGTTAAAGAAGTTGGCAAAAATGCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCGTGGTAAAGTAAGTACACTTGCTGAGAACCACCAGTTGACAACACGGCTTGTTGTACCATCAAACAAGGTTGTATTCATGGGGAAGGTGGAAAGGTTGCTGGGCTTCCAGCTATTGCAAGAGGAGCCCTGA
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| Protein seq | TGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLRGKVSTLAENHQLTTRLVVPSNKVVFMGKVERLLGFQLLQEEP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495000 | SBH | 5.097850 | 3.030061 | 7.637742 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35220 | SBH | 3.408226 | 2.150167 | 2.052179 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016060 | SBH | 0.176219 | 1.502282 | 1.657409 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015930 | SBH | 0.021553 | 0.0 | 0.076939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015330 | RBH | 0.389627 | 4.284258 | 7.085950 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015680 | RBH | 0.021132 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015610 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0314500 | SBH | 0.7674275 | 0 | 4.941933 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015570 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0337100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015490 | SBH | 0.565596 | 0.341854 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015370 | SBH | 1.320622 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015840 | SBH | 1.939851 | 4.682328 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015330 | RBH | 0.835262 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015500 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015710 | SBH | 2.463494 | 59.476727 | 12.754452 |
