Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0012250 | OGI:10050380 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:17404155-17410000 | ||||||||
| Gene Symbol | SSIIC, OsSSIIc, SSII-1, SSII1 | ||||||||||
| DNA seq | agagatagttctttttatcatcttgatgaagttccagacgatgatgaatttagctatgacctacagatgtaccttgatagacatccagatcaatctgaagttgttgcaactcaggattatgaggcacaactaagtcaaataagtgaaatgggacagtcagttgctgagggcacaagtgatgatccatctgcttcagcttctgtagatcttatcaatatcatattggtagcggcggagtgtgctccttggtccaaaacaggcaagatcataatagccacataccttctaattttttcagtttccatgaaaggacattgtgggtttaacctagtacctgtaagttggcggactggagggtgtgtgggctaacactcaaaattccaaatacaacattacatggttacatttcctgtgtgagctgatttaatttaaggacgtgttgtttgtgttcctatattaaacgttcttgttccgtcagcccgttatgtttctcgtgacaaatgttgatgtagtctgtcttcatgccttttttcatttcttgatagtttccatccagttactcacaattggcaactttataacctatgtcctgatgaagcctcacttgagtcgaaggcaaaagtaggctaatttcatttctgtagcttctgtagagctcacactcaatgattgaaacattggggttcgatgggtgttactttaggtgtcagggagaacatagatgtagatatattcattcctgcctgttgtagaagagcatgcatgctgtgtcttacatcatgaatttttcgtgcaatgaagtcggcccaactagtcaatatccctaaacttgatctagtaaagtacaaatgcatcgatgccccaaaaaactactcctatatagtctatctatggcatgttgaattaattttccaagacttcagacatatacaccagcaactcctcaagcctaaccatactatatttgagaattataagctaccaaattaattctatatctttgcaaatattactgagcatattggacctgctatatgctatagaacattcattctatacactacacaatcacaggttagtctattgtttcaaccagacctgctcataaaCccccaagaaaatattgccttggccttggaaggccatgccagagcttggcttgacacttccatgcctgaagcccccaaaagaacagagaagttccagtttatttaatgtacgaatgtcttttatttgtcccccctcacaggtgctggtagaagcgtgtgctgcccgcatgaggttgagagcgtccggtcacgcgccgtgttcagggggttttgggttttccgtgggccgtcttaacccaccagttgagtttttattgtttttagtggcctttttagggcatgagctggaccaacgtaccaaaagtagccttgagttcaccccagtgttgggcctaagcatgcatgagtctaaacatgaacaactctagatttacactcaattacccaaacatgaggtccatttactagctttcgagttgataaaggagggggaagggaagatggttgatataaattcagggacttaggcagttacccaattactatagctaaggagaggatggtctatatgagggacggagggaggcaatggtggtggcatggtcacttgtccacctttttgggtggctgcaatacacagtaactcgactgttgctatataacaaaactcattgccgtgtatatttgcaagtataaatacaccagtcgcattcatctctcttccccctcctttgacatctcttaatctcctgcaggtgggcttggagatgttgctggagctttgccaaaggctttggctaggagaggtcaccgtgtcatggtatgttttaatttttaaataagacttcctgaaccaatatttttggatagactcagtaagctaatcacatctaataagttctacaagtcaacacgtgatacaagcagagcaagatggcattcgagtctacaagaacttcagttcgcatacgctgcatatagtttaatcattacttagattgacttgattggagtaacaaacctcaatagacaggaaactcacaagtaatcagctgtggcataattagttatacaaccttctcatatagaaccagttactacaaaataatatgatatatttggaataattgggacatgtcagcagaacttgccatatgccctattgcatgaattggtgtgaaatatttaagcaaatttctcgacacaagttgttggctaaggcacatctattatgcactagagattaaaggacctaaattctgaacagtacacctttgcatgttgggtttcagtataataattgtaaatatagagtagtttcctgggcttgaaatagctctggtactatgtccagagttctaacctaaacattttatcttgagagaaaatcttgccatcttgcaatagacaaatagttgaaactgagtgatgcagtagtacaggtatatgacctttctgcaaattggcacattttcaggtccttaggttgatctcttctatgtgttgctgccccctaattgacaatataaactaatattttggtggttacatttgtagaagtgcttgaataggaaatatgtcttgttccctttttccttgaatagtagtaacttgcaatgggtacatatattttataggtagtagtgccaatgtataaaaactacgcagaacctcaacagctaggagagccaaggagataccaggttgcagggcaggtatattattctgtcatgtcatgagaaccttgtaacttattgactatattctcgtttgagactatgtgtacactgtacaggatatggaggtaatttattatcatgcatacatagatggtgtggattttgttttcattgacaatcctatcttccaccacgttgagaatgacatttatggcggagaccgaacagtaagtaatggattgttctctgttaccacttaccacttcattgcatgtttggtgataagaaaaattgagattaaaattttcttatgtatagtcagtggtatatctttcttgccttttttcagttgtttgtgatttaaagctaagatgattgacttttatctgcaggacatcttaaaacggatggttttgttgtgcaaagcggctatagaggtaaaaatttgctcatatgtcaagtataccacgtgcctttccatgagaaaatacatccaaagtaaatcatcatttaccattatttgggagtggcaaatcctaaaacctccatccacattacacgtctggtttcacagtcaacaaaccttgcaatagacaatctgaaaaatcttctttcttatttaatcttttatctttccattagtccttattttgtaatttggtgtcttgcttacgttttttatgctcaaagaaagatcagttgccttccttattgatctgttcaagcggcttttcagggatagattttgaactaaagtattattaacatgattgaccttttgttagccctgtttctctgtcttccttgatatgcttataaaacacaagattaccttgctttaggttccatggtatgttccttgtggtggctactgctacggtgatggaaatcttgtgttccttgcaaatgattggcatactgcactactgcctgtttatttgaaggcatactatcatgacaatggtttcatgatatatgcccgttctgttcttgtcatacacaatatagcacatcaggtatgttgatctttaactttcgcgtgtgatttgtgtttgccctaagtctcccaatgaatcacctactaaatgcacaatccatgtgttacttctggttcatggaaagttaaggaatcaaatctattaaatgtatctaccaagttgaacaatcatatagtccatttttagtccttgaggtcacagattgctcatgaacgaatattaatagatctttcagtgtttaacttgtcctttctagaaaggaaaacatttttagctttagatagcagatagattcaagcaacatcatgatggatatctgaaacattaaacagagactaccatgcagaaaattgagataatacagagaagaaagttttagagaagtctgaaaaaatttcaaactttcaatgaatagattacagattctgtttgttgtcttctgttttctgttgaacaatctacatagtggctgtactgaattatgtggtttttttgcttcagggtacctgttattctgttgataataagtttacttaatttcacttttcagggtcgtggcccattagatgacttcagttatctggatttgccagttgattacatggatcttttcaaactttatgacccatttgggggtgatcacctaaacatatttgcagctggtattaaagctgctgaccgtttgcttactgtaagccatggttatgcatgggagctcaaaacagctgaaggtggttggggtcttcatgggatcatcaatgaaagcgattggaaatttcagggcattgtaaatggcattgatacaactgattggaatcctaggtgtgatatccacctaaaatctgatgggtacaccaattattctctagaaacagttcaggcaggtaaacagcaatgtaaggcagcattgcagaaggaacttggtctcccagttcgtggcgatgttcctgtcattgctttcattggacggctagaccatcaaaaaggtgtagaccttatagcagaagcaatgccatggattgctggccaagatgtacagttaataatgttgggcactggacggcaagaccttgaagatacattgaggaggcttgagagccaacattacgatagagttagggggtgggttggtttttccatcaggttggctcatcgaatgacagcaggggctgatatactattgatgccatcaaggtttgagccatgtggattgaatcagctctatgccatgatgtatgggactgtcccagtagtccatgcggtcggtggtcttcgagacaccgttgagcactacaatccctacgaggagtccggaattggttggacttttgaaaaggcagaggcaaacagactgattgatgctctagggcactgcttgaacacgtacaggaactacaggactagttgggagggactccaaaagagagggatgatgcaagatctaagttgggataatgctgctaagctgtatgaggaagtcctcctagctgccaagtatcaatggtgatcagtccaagaagacctcgacggttgttcagtcattcatgaccgaaatgcctttttctcgtgtcagctgctcagatgcggccaccatctagttccatggcttacatcttcctgtgatttggatgaacagagttttttttgtcagatctgacatcattttcaagaaggcacatgatgaacctacttcccaggtgaatacagcagcggacgatgcctttgttggaaggtggcaaaacacatggaagattcagccgtctgccagcatgcacctctgtcctaaggagaggctccaagccccattgtgcgctctggagaggctccaaaccaccattgttcgcccctgggtaggttgttgagctcggttagatgcttttagtacagtagaatagcagatactagcggatagactagttgatatttcccctatgcaccgagtggttcggttgtaccttatttttttcttggctcttgttgtccagttcttcgatctttagacgattagcgtcccgggatttcccagatgacattgacatgagtgggaatttcccctgcaaatttactgtcagcttttccattggtctgcagctatgatcagttaaacccgtggatcccat
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| CDS seq | atgtaccttgatagacatccagatcaatctgaagttgttgcaactcaggattatgaggcacaactaagtcaaataagtgaaatgggacagtcagttgctgagggcacaagtgatgatccatctgcttcagcttctgtagatcttatcaatatcatattggtagcggcggagtgtgctccttggtccaaaacaggtgggcttggagatgttgctggagctttgccaaaggctttggctaggagaggtcaccgtgtcatggtagtagtgccaatgtataaaaactacgcagaacctcaacagctaggagagccaaggagataccaggttgcagggcaggatatggaggtaatttattatcatgcatacatagatggtgtggattttgttttcattgacaatcctatcttccaccacgttgagaatgacatttatggcggagaccgaacagacatcttaaaacggatggttttgttgtgcaaagcggctatagaggttccatggtatgttccttgtggtggctactgctacggtgatggaaatcttgtgttccttgcaaatgattggcatactgcactactgcctgtttatttgaaggcatactatcatgacaatggtttcatgatatatgcccgttctgttcttgtcatacacaatatagcacatcagggtcgtggcccattagatgacttcagttatctggatttgccagttgattacatggatcttttcaaactttatgacccatttgggggtgatcacctaaacatatttgcagctggtattaaagctgctgaccgtttgcttactgtaagccatggttatgcatgggagctcaaaacagctgaaggtggttggggtcttcatgggatcatcaatgaaagcgattggaaatttcagggcattgtaaatggcattgatacaactgattggaatcctaggtgtgatatccacctaaaatctgatgggtacaccaattattctctagaaacagttcaggcaggtaaacagcaatgtaaggcagcattgcagaaggaacttggtctcccagttcgtggcgatgttcctgtcattgctttcattggacggctagaccatcaaaaaggtgtagaccttatagcagaagcaatgccatggattgctggccaagatgtacagttaataatgttgggcactggacggcaagaccttgaagatacattgaggaggcttgagagccaacattacgatagagttagggggtgggttggtttttccatcaggttggctcatcgaatgacagcaggggctgatatactattgatgccatcaaggtttgagccatgtggattgaatcagctctatgccatgatgtatgggactgtcccagtagtccatgcggtcggtggtcttcgagacaccgttgagcactacaatccctacgaggagtccggaattggttggacttttgaaaaggcagaggcaaacagactgattgatgctctagggcactgcttgaacacgtacaggaactacaggactagttgggagggactccaaaagagagggatgatgcaagatctaagttgggataatgctgctaagctgtatgaggaagtcctcctagctgccaagtatcaatggtga
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| Protein seq | MYLDRHPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASASVDLINIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVVPMYKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIDNPIFHHVENDIYGGDRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGIGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW |
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| Function | Soluble starch synthase 2-1, chloroplastic/amyloplastic [UniProtKB/Swiss-Prot:Q7XE48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0012250 | OsLaMu_10g0012250.01 | Chr10 | 17404155 | 17410000 | + | NAM | ||
| CDS seq | atgtaccttgatagacatccagatcaatctgaagttgttgcaactcaggattatgaggcacaactaagtcaaataagtgaaatgggacagtcagttgctgagggcacaagtgatgatccatctgcttcagcttctgtagatcttatcaatatcatattggtagcggcggagtgtgctccttggtccaaaacaggtgggcttggagatgttgctggagctttgccaaaggctttggctaggagaggtcaccgtgtcatggtagtagtgccaatgtataaaaactacgcagaacctcaacagctaggagagccaaggagataccaggttgcagggcaggatatggaggtaatttattatcatgcatacatagatggtgtggattttgttttcattgacaatcctatcttccaccacgttgagaatgacatttatggcggagaccgaacagacatcttaaaacggatggttttgttgtgcaaagcggctatagaggttccatggtatgttccttgtggtggctactgctacggtgatggaaatcttgtgttccttgcaaatgattggcatactgcactactgcctgtttatttgaaggcatactatcatgacaatggtttcatgatatatgcccgttctgttcttgtcatacacaatatagcacatcagggtcgtggcccattagatgacttcagttatctggatttgccagttgattacatggatcttttcaaactttatgacccatttgggggtgatcacctaaacatatttgcagctggtattaaagctgctgaccgtttgcttactgtaagccatggttatgcatgggagctcaaaacagctgaaggtggttggggtcttcatgggatcatcaatgaaagcgattggaaatttcagggcattgtaaatggcattgatacaactgattggaatcctaggtgtgatatccacctaaaatctgatgggtacaccaattattctctagaaacagttcaggcaggtaaacagcaatgtaaggcagcattgcagaaggaacttggtctcccagttcgtggcgatgttcctgtcattgctttcattggacggctagaccatcaaaaaggtgtagaccttatagcagaagcaatgccatggattgctggccaagatgtacagttaataatgttgggcactggacggcaagaccttgaagatacattgaggaggcttgagagccaacattacgatagagttagggggtgggttggtttttccatcaggttggctcatcgaatgacagcaggggctgatatactattgatgccatcaaggtttgagccatgtggattgaatcagctctatgccatgatgtatgggactgtcccagtagtccatgcggtcggtggtcttcgagacaccgttgagcactacaatccctacgaggagtccggaattggttggacttttgaaaaggcagaggcaaacagactgattgatgctctagggcactgcttgaacacgtacaggaactacaggactagttgggagggactccaaaagagagggatgatgcaagatctaagttgggataatgctgctaagctgtatgaggaagtcctcctagctgccaagtatcaatggtga
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| Protein seq | MYLDRHPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASASVDLINIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVVPMYKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIDNPIFHHVENDIYGGDRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGIGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.102577 | 3.560000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0437600 | RBH | 0.398273 | 0.384001 | 3.887985 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30156 | RBH | 0.268982 | 0.257936 | 0.999538 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0437600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012070 | RBH | 0.128106 | 2.600004 | 4.872945 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012290 | RBH | 0.000000 | 1.528690 | 1.246281 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011990 | RBH | 0.526286 | 5.696423 | 4.181130 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012260 | RBH | 0.122820 | 0.225349 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012000 | RBH | 5.264939 | 5.337046 | 12.708202 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0261600 | RBH | 6.6425615 | 6.920019 | 49.067028 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012030 | RBH | 0.120752 | 0.611542 | 0.960493 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0281800 | RBH | 13.841348 | 13.702333 | 26.2151165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011780 | RBH | 0.083750 | 0.121615 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011750 | RBH | 0.079236 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012170 | RBH | 2.365684 | 6.531566 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011760 | RBH | 0.603987 | 0.0 | 1.099883 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012130 | RBH | 0.105899 | 2.773604 | 2.518078 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012070 | RBH | 1.343133 | 2.485409 | 6.525827 |
