Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0009320 | OGI:10040980 | 5/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:14018133-14018381 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcacggccgcggcgaggatgccctgtctctattcgccagcatgcaacgagccggcgtgacaccgaacgaggtgaccctcctcggcgtcctcacggcgtgctgtcatgccggactcatcgaggaggggctccagcaactcgacgccatgaggaggaacgagatcgacaaggtccccggctgcagcctcatcgagatcgacggcgttgtgcacgaattcAaagcaatcccagcAaattcgatccgatAa |
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| CDS seq | atgcacggccgcggcgaggatgccctgtctctattcgccagcatgcaacgagccggcgtgacaccgaacgaggtgaccctcctcggcgtcctcacggcgtgctgtcatgccggactcatcgaggaggggctccagcaactcgacgccatgaggaggaacgagatcgacaaggtccccggctgcagcctcatcgagatcgacggcgttgtgcacgaattcAaagcaatcccagcAaattcgatccgatAa |
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| Protein seq | MHGRGEDALSLFASMQRAGVTPNEVTLLGVLTACCHAGLIEEGLQQLDAMRRNEIDKVPGCSLIEIDGVVHEFKAIPANSIR |
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| Function | Pentatricopeptide repeat-containing protein At3g16610 [UniProtKB/Swiss-Prot:Q9LUS3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0009320 | OsLaMu_10g0009320.01 | Chr10 | 14018133 | 14018381 | + | NAM | ||
| CDS seq | atgcacggccgcggcgaggatgccctgtctctattcgccagcatgcaacgagccggcgtgacaccgaacgaggtgaccctcctcggcgtcctcacggcgtgctgtcatgccggactcatcgaggaggggctccagcaactcgacgccatgaggaggaacgagatcgacaaggtccccggctgcagcctcatcgagatcgacggcgttgtgcacgaattcAaagcaatcccagcAaattcgatccgatAa
More
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| Protein seq | MHGRGEDALSLFASMQRAGVTPNEVTLLGVLTACCHAGLIEEGLQQLDAMRRNEIDKVPGCSLIEIDGVVHEFKAIPANSIR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0444500 | SBH | 0.0 | 0.261625 | 0.311765 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g23830 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0444500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012470 | SBH | 0.0 | 0.0 | 0.782973 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009020 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012410 | SBH | 0.000000 | 0.0 | 2.709111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012680 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0011800 | SBH | 1.758239 | 0.3510365 | 2.2534395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012460 | SBH | 0.000000 | 0.0 | 0.072327 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0012600 | SBH | 1.274632 | 0.9234985 | 0.6850105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012200 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012590 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012190 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006230 | RBH | 0.060908 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012540 | SBH | 0.000000 | 0.0 | 0.615366 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012480 | SBH | 0.0 | 0.0 | 0.916422 |
