Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0012480 | OGI:10051210 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:17649196-17652265 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtcgatatggcaaacctggaaggattgaaatgaaacaaacatcaataagtagacgattgtttcatcgtttctttcaattaaaacacctccatcaaatgaaatgacactagttattgctgtcgtaatggttataagatgttttaactttggtcaaaatcaaactgttttaaatttaattaagtttatagataaaaatagcaatatttataatactaaattagttttatcaaatcaataattgaatatattttcataATatatttgtcttgggttgaaaaaactactacttttttctacaaatttggtcaaacttaaagcagtttgactttgacttaagtcaaaacgtcttataacctaaaacaaagggagtaacattttaagtcacatgagccatcataaaacatatccaaattacgaatttgtaaccaaacaaacatttttcctgaaaattttgtctagaaaattaccgtatatggatggcacaaggttgtcagcagtccacagagttgcatcctctcgttccacgataacctcctgtagctgaatagcgattgtgcctcacttcccaaatgcttatgatgatcacaagtaaaataaggggataacttctgtggagtactgcaaggaataaaacgggcattgctcgattgattctcttggtgagctccaggtaagatcaatataacctgatgaaaagaccatatcatgcgtaaatacaaaaatcaaccagatttatctttatacgtcatatagacatgcatagtaatgtgatatgttgtccagattgggctgtgcaactaaattcctatttttcaagatgcaagttaatctgcaggagtgtaacgaaaaaatacctgaaataaatttgtagccaactagaaactgcaccaccaagtgcatctctactttcctcgtagaagcccataagccacaatagtgagtcaattcaagagcatcctttatggtctctcatgaatgatcttatAaactgaagaatgatgttttcctcggtcaagaaaatcaacccgagtggaggcatgcttcaaaattgtttataatgcataaacagttttgttggctataactgcattaacgatgatcgacaagcacaatggcccatttgtgaagtcacaaacacttgagattagcaaaatcaccagtaatctccacatgaacaggagccactgctgaaatgatggaatctgtttgtatccctgacaacaatctcccgctcgaaaactttggagatgtatctgaatgcagaatggcaatccccacatatcctaatattcttcatgatccgaatggtcgcccctaaaggcatgttgatcagtgcaaatgcgagcgcgatcttctcgctgtgatactgtaactttgcctgcctctcttgttcatctacatgcagaagcacataatccgtgttaggaacataccctgctttcctaatctgtatgcttatctcctcccacttcttatatatctcctctgatcttggatgggtgtcatcatttgcgacaaacatgtgcactgagttctctatctccacccaactgcatgcaggttccttcttcacacgagttgccttcatcatcttcctcactctagctgcagcatcccattggcctgtggaagcataaatgttgtaaagcaacacaggtggaccagtatcatctgggtcaagttcaaatacatgatcggctgcaaattgcccaattttggcattcttatgcattctgcaagatccaagcaaggctccccaaacagcagcagttggcttcatgggcattttaaatataaatacaagagcatcattcagtaaaccagctcgaccaaggagatcaacaaccgtaacgtagtgatcaatctctggttccaggttgtgctccttcatcatgtcaaagtattgcttgccttctttcaccagtcccccatggctacaagcagtcaaaatggaaaggaaggtgatctgattcaggtgaacgccacatttcctcatctcttcaaaatgggtgactgcttccctgccaagtccatactgtgcaaatgcagtgagcattgagttccaagtaactaaatccttcttgtccacacggtcaaacacctttctcgcatcgatcatgctccctgactttgcatacatgtcaagtattgtgtttccaacaaatgcactcagtctctccccagatttaatcatgtgtgcatgcacccacttcccctgctcaagagcacctatgccagcaatggcactgaacacacttgagtacgtaaaatgtgttgcctcaaacccattcctctgcatctctgcaaacattaacagtgtggtctctccatcaccctttcttgcaaacccagcaatcaacgcgttccaagaaaccccattcttcgattcaagctggtcaaaaaccgcaatggccatgtccattcttccacacctcgcatacatgtcaaggagtgcactcccaacatagacatcatcatgccagtcatacttcaccgtgagtgcgtggatctgttccccgatgccactgctcgcgctagcaccagccgccttgaggagactcgcaaacgtgaacccattcggcttgaatcgccctctcagcatcccagggagcagcccaagggcctcatccggcatgtcgttctgtgcatacccGgcaatgagcgaggtccaagagcacatgtctcgcgtcgacatttcgtcgaacatccgtcgcgcgtcggccacaccgccgcacttgcagtacaagtggatgagcgagttgtgcaggaagacgctgccggcgaactgagagccggccaggtgtgcgtggatcgccctggcgtcgtccaggctcttgcgctgcgcgcaggccgtgatgagcgagtggtagaggcgcggggtggcggcgagctcgcgggcgtccacgcggtcgagtgtatcgcggatgatgccggtggaggcggcggcggggacggggatgtctgcgacggaggcggtgaggctggcggctgcggcgtagcgccggtcggcgtctcggcgacggcgaaggcggtggaggaggaggagactcgggaacggctttctcat
More
|
||||||||||
| CDS seq | atgagaaagccgttcccgagtctcctcctcctccaccgccttcgccgtcgccgagacgccgaccggcgctacgccgcagccgccagcctcaccgcctccgtcgcagacatccccgtccccgccgccgcctccaccggcatcatccgcgatacactcgaccgcgtggacgcccgcgagctcgccgccaccccgcgcctctaccactcgctcatcacggcctgcgcgcagcgcaagagcctggacgacgccagggcgatccacgcacacctggccggctctcagttcgccggcagcgtcttcctgcacaactcgctcatccacttgtactgcaagtgcggcggtgtggccgacgcgcgacggatgttcgacgaaatgtcgacgcgagacatgtgctcttggacctcgctcattgcCgggtatgcacagaacgacatgccggatgaggcccttgggctgctccctgggatgctgagagggcgattcaagccgaatgggttcacgtttgcgagtctcctcaaggcggctggtgctagcgcgagcagtggcatcggggaacagatccacgcactcacggtgaagtatgactggcatgatgatgtctatgttgggagtgcactccttgacatgtatgcgaggtgtggaagaatggacatggccattgcggtttttgaccagcttgaatcgaagaatggggtttcttggaacgcgttgattgctgggtttgcaagaaagggtgatggagagaccacactgttaatgtttgcagagatgcagaggaatgggtttgaggcaacacattttacgtactcaagtgtgttcagtgccattgctggcataggtgctcttgagcaggggaagtgggtgcatgcacacatgattaaatctggggagagactgagtgcatttgttggaaacacaatacttgacatgtatgcaaagtcagggagcatgatcgatgcgagaaaggtgtttgaccgtgtggacaagaaggatttagttacttggaactcaatgctcactgcatttgcacagtatggacttggcagggaagcagtcacccattttgaagagatgaggaaatgtggcgttcacctgaatcagatcaccttcctttccattttgactgcttgtagccatgggggactggtgaaagaaggcaagcaatactttgacatgatgaaggagcacaacctggaaccagagattgatcactacgttacggttgttgatctccttggtcgagctggtttactgaatgatgctcttgtatttatatttaaaatgcccatgaagccaactgctgctgtttggggagccttgcttggatcttgcagaatgcataagaatgccaaaattgggcaatttgcagccgatcatgtatttgaacttgacccagatgatactggtccacctgtgttgctttacaacatttatgcttccacaggccaatgggatgctgcagctagagtgaggaagatgatgaaggcaactcgttatattgatcttacctggagctcaccaagagaatcaatcgagcaatgccctactccacagaagttatccccttattttacttgtgatcatcataagcatttgggaagtgaggcacaatcgctattcagctacaggaggttatcgtggaacgagaggatgcaactctgtggactgctgacaaccttgtgccatccatatacggtttgccatatcgactaa
More
|
||||||||||
| Protein seq | MRKPFPSLLLLHRLRRRRDADRRYAAAASLTASVADIPVPAAASTGIIRDTLDRVDARELAATPRLYHSLITACAQRKSLDDARAIHAHLAGSQFAGSVFLHNSLIHLYCKCGGVADARRMFDEMSTRDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATRYIDLTWSSPRESIEQCPTPQKLSPYFTCDHHKHLGSEAQSLFSYRRLSWNERMQLCGLLTTLCHPYTVCHID |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At3g24000, mitochondrial [UniProtKB/Swiss-Prot:Q9LIQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0012480 | OsNaBo_10g0012480.01 | Chr10 | 17649196 | 17652265 | - | NAM | ||
| CDS seq | atgagaaagccgttcccgagtctcctcctcctccaccgccttcgccgtcgccgagacgccgaccggcgctacgccgcagccgccagcctcaccgcctccgtcgcagacatccccgtccccgccgccgcctccaccggcatcatccgcgatacactcgaccgcgtggacgcccgcgagctcgccgccaccccgcgcctctaccactcgctcatcacggcctgcgcgcagcgcaagagcctggacgacgccagggcgatccacgcacacctggccggctctcagttcgccggcagcgtcttcctgcacaactcgctcatccacttgtactgcaagtgcggcggtgtggccgacgcgcgacggatgttcgacgaaatgtcgacgcgagacatgtgctcttggacctcgctcattgcCgggtatgcacagaacgacatgccggatgaggcccttgggctgctccctgggatgctgagagggcgattcaagccgaatgggttcacgtttgcgagtctcctcaaggcggctggtgctagcgcgagcagtggcatcggggaacagatccacgcactcacggtgaagtatgactggcatgatgatgtctatgttgggagtgcactccttgacatgtatgcgaggtgtggaagaatggacatggccattgcggtttttgaccagcttgaatcgaagaatggggtttcttggaacgcgttgattgctgggtttgcaagaaagggtgatggagagaccacactgttaatgtttgcagagatgcagaggaatgggtttgaggcaacacattttacgtactcaagtgtgttcagtgccattgctggcataggtgctcttgagcaggggaagtgggtgcatgcacacatgattaaatctggggagagactgagtgcatttgttggaaacacaatacttgacatgtatgcaaagtcagggagcatgatcgatgcgagaaaggtgtttgaccgtgtggacaagaaggatttagttacttggaactcaatgctcactgcatttgcacagtatggacttggcagggaagcagtcacccattttgaagagatgaggaaatgtggcgttcacctgaatcagatcaccttcctttccattttgactgcttgtagccatgggggactggtgaaagaaggcaagcaatactttgacatgatgaaggagcacaacctggaaccagagattgatcactacgttacggttgttgatctccttggtcgagctggtttactgaatgatgctcttgtatttatatttaaaatgcccatgaagccaactgctgctgtttggggagccttgcttggatcttgcagaatgcataagaatgccaaaattgggcaatttgcagccgatcatgtatttgaacttgacccagatgatactggtccacctgtgttgctttacaacatttatgcttccacaggccaatgggatgctgcagctagagtgaggaagatgatgaaggcaactcgttatattgatcttacctggagctcaccaagagaatcaatcgagcaatgccctactccacagaagttatccccttattttacttgtgatcatcataagcatttgggaagtgaggcacaatcgctattcagctacaggaggttatcgtggaacgagaggatgcaactctgtggactgctgacaaccttgtgccatccatatacggtttgccatatcgactaa
More
|
|||||||
| Protein seq | MRKPFPSLLLLHRLRRRRDADRRYAAAASLTASVADIPVPAAASTGIIRDTLDRVDARELAATPRLYHSLITACAQRKSLDDARAIHAHLAGSQFAGSVFLHNSLIHLYCKCGGVADARRMFDEMSTRDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATRYIDLTWSSPRESIEQCPTPQKLSPYFTCDHHKHLGSEAQSLFSYRRLSWNERMQLCGLLTTLCHPYTVCHID
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.916422 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0444500 | RBH | 0.0 | 0.261625 | 0.311765 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30760 | RBH | 0.000000 | 0.160839 | 0.073356 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0444500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012470 | RBH | 0.0 | 0.0 | 0.782973 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012680 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012410 | RBH | 0.000000 | 0.0 | 2.709111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012430 | RBH | 0.614340 | 4.052928 | 2.064703 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0266600 | RBH | 0.3402225 | 1.34738 | 0.5435785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012460 | RBH | 0.000000 | 0.0 | 0.072327 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0286900 | RBH | 0.4712435 | 1.3108915 | 4.626461 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012690 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012540 | RBH | 0.000000 | 0.0 | 0.615366 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012390 | RBH | 0.161068 | 0.000000 | 0.000000 |
