Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_08g0024200 OGI:08078770 | 14/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr08:28868866-28879994
Gene Symbol -
DNA seq

tcaagccaagatccagtcattcatccgcttgatgaagaacgcgaagaagcattccaagaagactgtgaagaaggttgtctcagacaacgactgcaggatagtgaagctgatgagcgaggctagagagatcactacctcactattcgagtcaatattgtacctcttgtcaaagcaaattacgatgccaaaatcatctctcatccccaaggcattccagaagaaaaacctggtgatttgcaatgaggagcagttgcaggcattagagtgctgcatcggagatcttgaggctggagcaggacttctgttcaggagattgatccagaccagggttactctcctcaacattcttagctcatagatactcctcaagatctgacactcttaagaccctgcgattggcatccgtcttttaaaggatttgctgatccttcccatttgtatatgttataggcttactgtacagcaaagaaaatacatgaaaagagacaaagttttgatccaattcttgtcgtgcgcttgatcctcgcgtgttgcagagttacatgatgggttatgcaattcaatgtcaatataattgccatggcatatgacttatgaaATatatgggcaagttagcgatattactttcatttcttttatttcttacaggcaaattgatatatgatgcgccatagggctatgaaaaatggccatgtgggtcatgccagtctgatgccgtttgttgcctcactagcaagcaactgatccatgtaaagtggatcttgctgctgcaggtaaaacaggccagctccaatacacgaggttaagcgtgtaagcggcatggattgtacacaatagaacacttgttgaaattaacaaaagcattaaaaaatagataacacacttggcaataataatactctggtaacactttattAaaataatcccttgataacatgcaataatgccaaaatccaccggtagactgaacaaacctgctggcttttgctgccaatagttgggacatgacaatgtgatagctgacttggaagatagacgcagtgcattaaaatattgagcatacaagactatatgctgcagccagatctcaaaccatgatagatagcatcgggaggtgaactggcaggattctgtttgtctaccatccaattgatgctgtgtgttgcacatctctgtataaataggcctcagcacaaagctagaaacatcaaaccaaaacttccctctctttctcatctctcagactcaatagggagacagagttctagcgacagaaatggctttccaccagagatcaattagtttgccttctaggcctcactctaaggttgaagaggagctgtgcatcctagatgcatgcatctcttcaccctccacgacccttgatacaatgtgtgagggtttgaggaggcttgccaacatctatagctctattgaggagatcatgtgccttcctagcaaccaagctttctcctcccaacgaagaaaattgttggatggagaaatggaatgctcccttgagctattggatctatgcaacgtgatgcatgaggacttcacagagttgaaggccatcattcaagatatgcaagtggccctgagaaaaggagatgatgcagctgttcaatccaagacccaatcatactaccgcttgttgaagaaggcaaagaaacatttcaagactgcaaagaaggttacttatgaaaaggaggattgcaggatggccaggctattgagggaggctagagATatatcaacctctatgctggagtccacactgcatctcctgtcaaagcaaatcgaaatgcccaaacaatcacttgtttccaaggcattcaacaagaAGaaagtagttatttgcgaggaggagcaattgcaggtgttagagtgcagcatcggagatcttgagagcggagcaggacatctgttcaggaaattggtccagagcagagtttctctcctcaacattcttagctcatagatactccagaatcttcactcgacacccagcgattggcatccgccttttaaaggatctgctgatctttcacattgtatatatataagtagaaatgtacagaaaactccatacataatagtgaacaaaagttttggccaaactcagtgtcatgaaaatccttgcatgcttctgatttcaacctctaagcgattatccatgtcagtactgttgcccttgtgcagttgtgctttgctccgaatatagtctgcaaaagaaAAGacagcatgtgatctgtgaaatacgtgcggaattatttgatgacgccaacaaaaaaaaatgttcgatgaatgcagaatcacaaggaattatccattggccctgaacattcgcttgtctactcaggtctcaacaggatggccgcgaaggattcggctgggaacgcaaggcattgcgaagataccgcagataccgtgtgctattgagttagggttagtgggatacctccgccagaactgatggagacctccgcgatcttgtcgggggctgccttccagcgcgggggtagcggcgggaagggtggtcgcggcctcaccggcagccggcggcgagcggcgcatctcctcgctcctcttcttcttctccggtGgggggtggtggcgagtggtgagacgaagacacgtggattggggaacaagtggggtactgagtggattcatgggcttcctgtgggccggatggtctcgctatcattcagtttggcccatgaaactacattgccaacaacaattctttttctgtaaaaatttgaacaactctgcatagttagaaaactatttatatcttgtagtatactcttatatagggtatgtttagattggtgtcgaaataaactttaccaaaattttagcaaattgtcaacattgccaaagttttggtagaattggcttattaatgttgccaaaattatatacacattgtcaatatttggtaacaaactaaacgtagctacataattgtcaattttaccaaataatgctatggttggaaatgtcatcaatctgaacatgcccatagatatggttgaaggggtggagtcatttgcagccccattgtttctcttattcatatgcttatccgaatcgcttatttttaaggaaaattgttatatacatgtccttagctatttaaaaacaaatgttgtgaaataaactacgatgaaaaaaaCaaacaaatcaaattcaaattttagttctaaaattcaaattttataatcataagtcaaacaatactccctccgtttcacaatataagttattctagcatttcccacattcatattgatgttaatgaatctagatagatatatgtctagattcattagtaccatttcccacattcatattgatgttaatgaatctagatagatatatgtctagattcattagtatcaatataaatgtaggaaatgctagaatgacttacattgtgaaacggaggaagtaagacatttgaagtcggcgcggctataaatatagaTttttctctctttttgcattgtaaagcgcttctttttttcatgttcagaattaagggtttacttaagtacatcattaatcaagtcttaaaagcaaatgcaggaaacaattaataattttgttcctatcatttaatttattattaaatatatttttattattaaatatacttttatgtatacatatagttttacacatttcacaaaagTttttaaataagacgaatggtcaaacatgtttaaaaaaagtcaaccgtatcaaacatttagggaaaaaaacatttagggaaaatgagggagtagatcaaaatagcgtactaatgttcctgatcgaacgcgaggacaagcgagttggtttgcaacttcgcattatcgcatattagacgcccttgtggattatttgcggacgattaataaaaaaaagttagcaaacatgacagcccgataagcttagttattgttcaacacacggatcatctcgagattgaggtgaaacaaaccagccatgcgcacgaaggcaattatggatggaatcatcgtgtagtaatacagaaagcgtaagccaaccaaatacactgcgatatctgcttccaacggaccgtatcctatgcacacagaccctcacgtgtacataccgtgtacactaactaaaaattatcacaaaaaattttaggaaaattcatacatgtactatgtactttcaatagtattacatctacgtgcaaagtcgcatcttcaaattcattctacatagagaataacaaaaaagataaaattctgacaaaattgcaaccttaaaacagtcagattttttgtttttttgttacggctaaaatataatgaatttgacgttaagattttaaccctaggtgtaatacaattgaaaatatgtgtatgattttttctaaattttttagtgatattttttagttggtgtgcacgtgtgtacacgtgagggcctgtgtgtataggatatgtttcccagatagatatgcacacgaggcaaagtcaaactctttgcacggttgcaacagcaaccacagctcatctcttctcactgcattgcattggcattgcttgctcatcacagatctcacacgatctggacctggcattaaactgaagtttcacgcgctcgtgcagatgagtgtttgtctccagtttcaggtgagacatgacagctagtcatctactagtattatctcacaagttcattcaatcagtagagatgctgcctcttgcatcgagcaaagcatataatgatagagattaaagaaacagaaacctgttgcttctgtagttctgttgcagcacaagtgatcgtcaattatcaatgagattctttctgtctgctggtccagcaatgagacctgcttctccttccttggttatatatacagagaagccacggtttggtgtcgacaacattgcgaagcagtcttgagttatctcctcttctcttccaattccagagagaaacaagtcatcagcttccatcccagcaatggcattccacctcagatccgcgagtgcgccttccagccctcgctctgccaaaaccgacgtcgaagaacagctgcagagcctcgaggagatcgtctcctcaccctctgcaacaattgaaacaatgtgcaatggtttcaggagacttacagatgtgtacagctgcatggatgagatgatgtgcttgcccagcttcaggcttcagcagaggagagctgtggagcaagagctggagcggtctctcgccttgcttgacctctgcaacgccatgcaagagagcttctctgagctcaaggcgagcacccaggagatgcagttggccatcaagaggggtgatgatgcagcagttcagtccaaggttcaggcttacacccgcctgaccaagaaggcgcagaaacagttcaagaagatcaacaagaagtctgcttcagaagaccaggagggttgcagggtggtcaagctgctggctgatgccagagagatcgctctctcggtgcttgaatcaactttgcacctcctgtcaaagcagattgcgatgccaagtcaaagcaagtggtctcttgtctccaaggcattccagaagacaagggttacatgccaggaggagcaattacaggcgttggagttggacatcgttgatcttgagagcggagttgagactttgttcaggagattgatccagagcagagtttctcttttgaatgctcttagcttgtagatagatcatacaccaactctgatcccctgtgactggcgtccgccttttagaggatttgctgatcattgaaacaatttttggatgtatagtagtgtacataaatgagaggaaatgtacagaattcactcgaatgaaaaacaaaggatttttccttctgtcttatttcactgtcttacttcccttttcccctcaatcgacatggatggcaggtgaacaatcatctatcattttgaatacttcagctgaagcttgttcaagagggcacatagcaatttaatcagaattttcttCatctatcttggttgttataataaagaaattagtataattgcactgttcaaataTtttattcgcaaagcttttaccgtgagatggacacgtcattgctattcacatgagatgtgcctcaagaagaggcgcaagacccttcttcaatggatattgccatgcatataattgatagcagcatgacagattgccagttagccggctgatatagttcttgataaattgttccgcaagaagatggagtagcacagatggcaagttggaaacaacacaactcgattagcattctccattaaagaagtgctgcagcatgcatgtatgacaaggctctgcactatgactacgagttagctgccatgctgattcctgctggcaataacacactatgATatctgcgaccagcaacagatgacacatgatgtcaagtcaactcctcctttgcacggttgcaacagcaaaaacagctcatctcctctcactgcactgcattgctttactcaccaatctcacgatatggatctgacattaaactaaactgacacgctcgtgcagatgagtttgtctccagtttctggccagcgaggcatgatagccacctcaatgcaagctcaattagagaagagatgctttgtgcattgagcaaagcatacaaatattaaagaaacagaaacctgtcgtgcagatggtggcttctgttgcagcacaaggcttcgccaattattagagattctttctgtctgctggtccagtaatgagactgcttctccctccttcgttatatatagagaagccatggtttgctgttgacaacattgcaaagcagtctgttctcttccatttctagagagaaacgagtcatcagcttccatcccaaccatggtattccacctcagatccgcgagtgtgccttccagcccttgctccaatgaaaccaacatcgaagaacagctggcgagcctcagggagatcatctgttcaccctctgcaaccatggaaacaatgtgcaatggtttcaggaggcttacagatgtgtacagctgcatggatgagatcatgtgcttgcccagcagccaagctagcctttgcaagcatcagcagaggagagaagtggagaaagagctggagcggtctctcaccttgcttgacctctgcaacgccatgcaagagagcttctctgagctcaaggcaaccacccaggagatgcagttggccatcaagagaggagaagatgcagcagttcagaccaatgttcagtcttACacccgcctgaccaagaaggcacataaacagtgcaagaagatcaacaagaagcctgctagttcagctgatcaggagagctgcagggtggtcaagctgatggctgatgccagagagatcactttctcagtgcttgaatcaactttgcatctcctgtcaaagcagattgcggtgccgagttccagcaagtggtctcttaaggcattccagaagacaagggttacatgccaggaggagcaattacaggtgttggagttggacatcgttgatcttcagagcggagttgagactttgttcaggagattgatccagagcagagtttctcttttgaatgctcttagcttgtagatagatcatacaccaactctaatcccctgtgattggcatccgccttttagaggatttgctgatcattgaatcaattttgtcatgtgtacataaatgagaggaaatgtacagaaatttatgcgattgaaaaacaaaggatttattccttttgtttaatttcactgtcttccttttccccctcattccacatggatgtcaactgaacaatcacctgacattttgagttcttcagatgaaacttgttcacgaaaggaaatagtaacttaataagaattttcttcatcgatcttggctgttataatatagagatcagtagtaatgcagagttcaaatattagatttacaaagctttaccgtgagatgcccatgtaattactattcacatgtgacgtgcctcaagtacaggcacaagatccttctgcagtggatcttgccttgcatatagcaccatgacagattgccagctcgtatggttgttgataaattattctgcaatcagatgggcagcacagatggcaagttgcaataacactactcgattagcaatctccattggataaatgctggagcttgcacgtatgacaaaggctcaacgctagagtaagctgccatgctgattcctgctgccaataactggaacatgacattgtgattcagttaggcggcctaattgaccagaaatttggacagcacgtggaatcatcttgagattgcaacagatgctaaatgctgtgagcacagcaggcaagccagtgatgcaatgctgcaagatcagtgagcagattctaccagataagaaacacggtttggagcctggagagagaagtcaactgctgctcctgtgagcaaggctcatccttctcatgatctggatctgaatattacattagactatacacttgtgcaggtgaacttgccgccaataatcaggacatgacagcattgtaagctgagctagaggtgcctctacacttggttgggaaacataaaaaaacatcagcctgtcgaggagatgggtggcgtctgttgcagcagcaaagcacttcattattattgagatttcattgttgtctacacggtgagggatgccattgcttctgcctctttgtatatatagaggaaagctatagccgggtcgacaccattgcagcacagcattcttctcatcttcacttccacagagaagagaaaaaggataagcttccactgcagccatggcattccacctcagatctgcgagtgtgccatccagcccttgctccaatgaaaccaacgctgaagaactgctgcagagtctaaaggtgaccatttcctcacccagttcaaccatcgagacgatgagcagtggctggaagaagcttgggagtatctacaactgcatcgatgagatcatgtgtctgcccagcagccaagctctcctttgccaaccactgcagaggaaagcagtggagcaagagttagaaggctctctcgtcgtgctagacctctgcaacgccattcacgagagcttttccgggctcaaggcatgcatccaggacatgcagctggctgtcaagagaggagatgatgcagctgtccaagccaagacacagtcttacatccgcctcgccaagaaggggcgaaaacagttcaagaatatcagcaagaagtcttcttcagcagatcaggagagctgcagggtgatcaagctgttggctgaagctagagagatagctctgtcaatgctcgagtcgtcatcacatctcctgtcgaagcagattgctttgccaagctctagcaaatggtctcttgtctccaagacattccagaaaagaaggcttgtctgcgaggaggagcaattgcaggtgttggagttagacattgttgatctagagactggagtcgagaatctgttcagaaaatcaatccagagcagagtttctcttctcaacactctcagcttgtagatagatcatacaccaactctgatcccatgcgattagtatccgccttttagaggatttgctgatcactggaacaaaattttgatgtgtacatatatgaaaggaattgtacagaaactcagttgagaaacaaaaacaaagtatttgtccacttcctattgttgattacactgtttatgaatgtttgatataaatacctaattttctaacaatatgctcatcattattgactgttagagaagcagttagcagaattttcaagttcagcttcgaaatgatttactatgatacggcctcgctattcagatgctatgtgctaactcaacaagaagcaaaggatccttgagcagtggatcttgctaccagagctaagacaagccagctccaatgcacgaggttgaacgtgtgagcggcatggattgcacataataaaacaatatttaaattagcaagcacactaaaaactagaagacacacctatcaccaacaatactcagtaccactcccttaaagtaacatcttgaaaacgcaataatgtcaagatccaccaatagagtgaactaaccttctgattcttgcttccaatagttggaacatgacaatgtgatagttcattgggaggatatgtagtgcactaatatatgcagctacacatgagtgacagaatagattctatatgctgctaccagatctcagaccttgatagacagcatctgggagatgaactggagggattctacttgtctgtaaaccaaacgatgctgtcccgtgcagttcctctgtataaataggccttggcagaaggccaaacacatcaaaccaaagcttggactctccttcccatctcctcagccacaacacaacaagaattacatcaacagatatggcttgccaccaaagatcaattagcttgccttctaggactcactccaaagttgaagaagagcttcacatcgtagaggcatccatctcttcaacctcgatgaccattgagatcctctccgatggtttaaagaggcttgaggatatctacagctctgttgagggcatcatgtgcctgcctagcaaccaaatttgctcatcccagaaaaggaagttgttggatggagaaatggaatgctcccttgagctactggatctctgcaatgctatgcatgaggtgtttgctgagttgaaggccatcatccaagatatgcaagtatctcttagaaaaggagatgatgcagttgttcaagctaagatccagtcatacattcgcttgatgaagaaggcaaaaaagcatttcaagaagactgtgaagaaggttacctcagacaaggaggatgacaagatggtcaagctcttgagcaaggctagagagatcacaacctctgtacttgagtcatcaatggacctcttatcgaagcaaatcgcaacaccaaaaatgtctatcatctccaaggcattcctgaagaaaaactcagttgtttgcagtgaggaacagttgcaggtgttagagtgctgcatcggagatcttgaggctggggctggacttgtgttcaggagattggtccagagcagggttactctccttaacat

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CDS seq

atgttaaggagagtaaccctgctctggaccaatctcctgaacacaagtccagccccagcctcaagatctccgatgcagcactctaacacctgcaactgttcctcactgcaaacaactgagtttttcttcaggaatgccttggagatgatagacatttttggtgttgcgatttgcttcgataagaggtccattgatgactcaagtacagaggttgtgatctctctagccttgctcaagagcttgaccatcttgtcatcctccttgtctgagagatccagtagctcaagggagcattccatttctccatccaacaacttccttttctgggatgagcaaatttggttgctaggcaggcacatgatgccctcaacagagctgtag

Protein seq

MLRRVTLLWTNLLNTSPAPASRSPMQHSNTCNCSSLQTTEFFFRNALEMIDIFGVAICFDKRSIDDSSTEVVISLALLKSLTILSSSLSERSSSSREHSISPSNNFLFWDEQIWLLGRHMMPSTEL

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_08g0024200 OsLaMu_08g0024200.01 Chr08 28869753 28879994 - NAM
CDS seq

atgttaaggagagtaaccctgctctggaccaatctcctgaacacaagtccagccccagcctcaagatctccgatgcagcactctaacacctgcaactgttcctcactgcaaacaactgagtttttcttcaggaatgccttggagatgatagacatttttggtgttgcgatttgcttcgataagaggtccattgatgactcaagtacagaggttgtgatctctctagccttgctcaagagcttgaccatcttgtcatcctccttgtctgagagatccagtagctcaagggagcattccatttctccatccaacaacttccttttctgggatgagcaaatttggttgctaggcaggcacatgatgccctcaacagagctgtag

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Protein seq

MLRRVTLLWTNLLNTSPAPASRSPMQHSNTCNCSSLQTTEFFFRNALEMIDIFGVAICFDKRSIDDSSTEVVISLALLKSLTILSSSLSERSSSSREHSISPSNNFLFWDEQIWLLGRHMMPSTEL

Gene Transcript Chromosome Start End Strand Source
OsLaMu_08g0024200 OsLaMu_08g0024200.03 Chr08 28868866 28870287 - NAM
CDS seq

atgttgaggagagtaaccctggtctggatcaatctcctgaacagaagtcctgctccagcctcaagatctccgatgcagcactctaatgcctgcaactgctcctcattgcaaatcaccaggtttttcttctggaatgccttggggatgagagatgattttggcatcgtaatttgctttgacaagaggtacaatattgactcgaatagtgaggtagtgatctctctagcctcgctcatcagcttcactatcctgcagtcgttgtctgagacaaccttcttcacagtcttcttggaatgcttcttcgcgttcttcatcaagcggatgaatgactggatcttggcttga

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Protein seq

MLRRVTLVWINLLNRSPAPASRSPMQHSNACNCSSLQITRFFFWNALGMRDDFGIVICFDKRYNIDSNSEVVISLASLISFTILQSLSETTFFTVFLECFFAFFIKRMNDWILA

Gene Transcript Chromosome Start End Strand Source
OsLaMu_08g0024200 OsLaMu_08g0024200.02 Chr08 28868866 28879406 - NAM
CDS seq

atgttgaggagagtaaccctggtctggatcaatctcctgaacagaagtcctgctccagcctcaagatctccgatgcagcactctaatgcctgcaactgctcctcattgcaaatcaccaggtttttcttctggaatgccttggggatgagagatgattttggcatcgtaatttgctttgacaagaggtacaatattgactcgaatagtgaggtagtgatctctctagcctcgctcatcagcttcactatcctgcagtcgttgtctgagacaaccttcttcacagtcttcttggaatgcttcttcgcgttcttcatcaagcggatgaatgactggatcttggcttga

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Protein seq

MLRRVTLVWINLLNRSPAPASRSPMQHSNACNCSSLQITRFFFWNALGMRDDFGIVICFDKRYNIDSNSEVVISLASLISFTILQSLSETTFFTVFLECFFAFFIKRMNDWILA

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
AF Chr08 28870063 28879406 - OsLaMu_08g0024200.03 OsLaMu_08g0024200.02,OsLaMu_08g0024200.03 All

Expression

Leaf Root Panicle
FPKM 0.128326 0.826165 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0552633 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g43815 RBH 0.144332 0.305114 0.415471
Nipponbare | IRGSP 1.0 | RAP-db Os08g0552633 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0024880 RBH 0.000000 0.000000 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0024740 RBH 0.000000 0.000000 0.445049
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0024660 RBH 0.000000 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0024900 SBH 0.167979 0.259811 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0024590 RBH 0.000000 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0024420 RBH 0.071184 0.171945 0.039374
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0023800 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0024160 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0023980 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0024930 RBH 0.000000 0.260335 0.356277
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0024070 RBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G024340 SBH 0.000000 0.000000 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0024460 RBH 0.0 0.000000 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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