Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsKeNa_08g0024740 | OGI:08078770 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr08:28812446-28823585 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | tcaagccaagatccagtcattcatccgcttgatgaagaacgcgaagaagcattccaagaagactgtgaagaaggttgtctcagacaacgactgcaggatagtgaagctgatgagcgaggctagagagatcactacctcactattcgagtcaatattgtacctcttgtcaaagcaaattacaatgccaaaatcatctctcatccccaaggcattccagaagaaaaacctggtgatttgcaatgaggagcagttgcaggcattagagtgctgcatcggagatcttgaggctggagcaggacttctgttcaggagattgatccagaccagggttactctcctcaacattcttagctcatagatactcctcaagatctgacactcttaagaccctgcgattggcatccgtcttttaaaggatttgctgatccttcccatttgtatatgttataggcttactgtacagcaaagaaaatacatgaaaagagacaaagttttgatccaattcttgtcgtgcacttgatcctcgcgtgttgcagagttacatgatgggttatgcaattcaatgtcaatataattgccatggcatatgacttatgaaatatatgggcaagttagcgatattactttcatttcttttatttcttacaggcaaattgatatatgatgcgccatagggctatgaaaaatggccatgtgggtcatgccagtctgatgccgtttgttgcctcactagcaagcaactgatccatgtaaagtggatcttgctgctgcaggtaaaacaggccagctccaatacacaaggttaagcgtgtaagcggcatggattgtacacaatagaacacttgttgaaattaacaaaagcattaaaaaatagataacacacttggcaataataatactctggtaacactttattaaaataatcccttgataacatgcaataatgccaaaatccaccggtagactgaacaaacctgctggcttttgctgccaatagttgggacatgacaatgtgatagctgacttggaagatagacgcagtgcattaaaatattgagcatacaagactatatgctgcagccagatctcaaaccatgatagatagcatcgggaggtgaactggcaggattctgtttgtctaccatccaattgatgctgtgtgttgcacatctctgtataaataggcctcagcacaaagctagaaacatcaaaccaaaacttccctctctttctcatctctcagactcaatagggagacagagttctagcgacagaaatggctttccgccagagatcaattagtttgccttctaggcctcactctaaggttgaagaggagctgtgcatcctagatgcatgcatctcttcaccctccacgacccttgatacaatgtgtgagggtttgaggaggcttgccaacatctatagctctattgaggagatcatgtgccttcctagcaaccaagctttctcctcccaacgaagaaaattgttggatggagaaatggaatgctcccttgagctattggatctatgcaacgtgatgcatgaggacttcacagagttgaaggccatcattcaagatatgcaagtggccctgagaaaaggagatgatgcagctgttcaatccaagacccaatcatactaccgcttgttgaagaaggcaaagaaacatttcaagactgcaaagaaggttacttatgaaaaggaggattgcaggatggccaggctattgagggaggctagagatatatcaacctctatgctggagtccacactgcatctcctgtcaaagcaaatcgaaatgcccaaacaatcacttgtttccaaggcattcaacaagaagaaagtagttatttgcgaggaggagcaattgcaggtgttagagtgcagcatcagagatcttgagagcggagcaggacatctgttcaggaaattggtccagagcagagtttctctcctcaacattcttagctcatagatactccagaatcttcactcgacacccagcgattggcatccgccttttaaaggatctgctgatctttcacattgtatatatataagtagaaatgtacagaaaactccatacataatagtgaacaaaagttttggccaaactcagtgtcatgaaaatccttgcatgcttctgatttcaacctctatgcgattatccatgtcagtactgttgcccttgtgcagttgtgctttgctccgaacatagtctgcaaaagaaaagacagcatgtgatctgtgaaatacgtgcggaattatttgatgacgccaacAaaaaaaaaaatgttcgatgaatgcagaatcacaaggaattatccattggccctgaacattcgcttgtctactcaggtctcaacaggatggccgcgaaggattcggctgggaacgcaaggcattgcgaagataccgcagataccgtgtgctattgagttagggttagtgggatacctccgccagaactgatggagacctccgcgatcttgtcgggggctgccttccagggcgggggtagcggcgggaagggtggtcgcggcctcaccggcagccggcggcgagcggcgcatctcctcgctcctcttcttcttctccggtggggggtggtggcgagtggtgagacgaagacacgtggattggggaacgagtggggtactgagtggattcatgggcttcctgtgggccggatggtctcgctatccttcagtttggcccatgaaactacattgccaacaacaattctttttctgtaaaaatttgaacaactctgcatagttagaaaactatttatatcttgtagtatactcttatatagggtctgtttagattggtgtcgaaataaactttaccaaaattttagcaaattgtcaacattgccaaagttttggtagaattggcttattaatgttgccaaaattatatacacattgtcaatatttggtaacaaactaaacgtagctacataattgtcaattttaccaaataatgctatggttggaaatgtcatcaatctgaacatgcccatagatatggttgaaggggtggagtcatttgcagccccattgtttctcttattcatatgcttatccgaatcgcttatttttaaggaaaattgttatatacgtgtccttagcgatttaaaaacaaatgttgtgaaataaactacgatgaaaaaaacaaacaaatcaaattcaaaatttagttctaaaattcaaattttataatcataagtcaaacaatactccctccgtttcacaatgtaagttattctagcatttctcacattcatattgatgttaatgaatctagatagatatatgtctagattcattagtatcaatatgaatgtaggaaatgctagaatgacttacattgtgaaacggaggaagtaagacatttgaagtcggcgcggctataaatatagatttttctttctttttgcattgtaaagcgcttctttttttcatgttcagaattaagggtttacttaagtacatcattaatcaagtcttaaaagcaaatgcaggaaacaattaataattttgttcctatcatttgatttattattaaatatacttttatgtatacatatagttttacacatttcacaaaagtttttaaataagacgaacggtcaaacatgtttaaaaaagtcaacggtatcaaacatttaggggaaaaaacatttagggaaaaggagggagtagatcaaaatagcgtactaatgttcctgaacgaacgcgaggacaagcgagttggtttgcaacttcgcattatcgcatattagacgcccttgtggattatttgcggacgattaataaaaaaaaagttagcaaacatgacagcccgataagcttagttattgttcaacacacggatcatctcgagattgaggtgaaacaaaccagccatgcgcacgaaggcaattatggatggaatcatcgtgtagtaatacagaaagcgtaagccaaccaaatacactgcgatatctgcttccaacggacagatagatgggagcgtatcctatgcacacagaccctcgcatgtacacaccgtgtacagcaactaaaaattatcacaaaaaattaatacatgtactttcaatagtattacatctacgtgcaaagtcacatcttcaaattcattctacatagagaataacaaaaaagataaaattctgacaaaattgcaaccttaaaacaatcagattttttgtttttttgttacggctaaaatataatgaatttaacgttaagattttaaccctaggtgtaatacaattgaaagtatgtgtatgattttttctaaattttttattgacattttttagttggtgtgcacgtgtgtacacgtgagggcctgtgtgtataggatatgtttccaagatagatatgcacacgaggcaaagtcaaactctttgcacggttgcaacagcaaccacagctcatctcttctcactgcattgcattggcattgcttgctcatcacagatctcacacgatctggacctggcattaaactgaagtttcacgcgctcgtgcagatgagtgtttgtctccagtttcaggtgagacatgacagctagtcatctactagtattatctcacaagttcattcaatcagtagagatgctgcctcttgcatcgagcaaagcatataatgatagagattaaagaaacagaaacctgttgcttctgtagttctgttgcagcacaagtgatcgtcaattatcaatgagattctttctgtctgctggtccagcaatgagacctgcttctccttccttggttatatatacagagaagccatggtttggtgtcgacaacattgcgaagcagtcttgagttatctcctcttctcttccaattccagagagaaacaagtcatcagcttccatcccagccatggcattccacctcagatccgcgagtgcgccttccagccctcgctctgccaaaaccgacgtcgaagaacagctgcagagcctcgaggagatcgtctcctcaccctctgcaacaattgaaacaatgtgcaatggtttcaggagacttacagatgtgtacagctgcatggatgagatgatgtgcttgcccagcttcaggcttcagcagaggagagctgtggagcaagagctggagcggtctctcgccttgcttgacctctgcaacgccatgcaagagagcttctctgagctcaaggcgagcacccaggagatgcagttggccatcaagaggggtgatgatgcagcagttcagtccaaggttcaggcttacacccgcctgaccaagaaggcgcagaaacagttcaagaagatcaacaagaagtctgcttcagaagaccaggagggttgcagggtggtcaagctgctggctgatgccagagagatcgctctctcggtgcttgaatcaactttgcacctcctgtcaaagcagattgcgatgccaagtcaaagcaagtggtctcttgtctccaaggcattccagaagacaagggttacatgccaggaggagcaattacaggcgttggagttggacatcgttgatcttgagagcggagttgagactttgttcaggagattgatccagagcagagtttctcttttgaatgctcttagcttgtagatagatcatacaccaactctgatcccctgtgattggcgtccgccttttagaggatttgctgatcattgaaacaatttttggatgtatagtagtgtacataaatgagaggaaatgtacagaattcactcgaatgaaaaacaaaggatttttccttctgtcttatttcactgtcttacttcccttttcccctcaatcgacatggatggcaggtgaacaatcatctatcattttgaatacttcagctgaagcttgttcaagagggcacatagcaatttaatcagaattttcttcatctatcttggttgttataataaagaaattagtataattgcactgttcaaatattttattcgcaaagcttttaccgtgagatggacacgtcattgctattcacatgagatgtgcctcaagaacaggcgcaagacccttcttcaatggatattgccatgcatataattgatagcagcatgacagattgccagttagccggctgatatagttcttgataaattgttccgcaagaagatggtggatattgccatgcatataattgatagcagcatgacagattgccagttagccggctgatatagttcttgataaattgttccgcaagaagatggagtagcacagatggcaagttggaaacaacacaactcgattagcattctccattaaagaagtgctgcagcatgcatgtatgacaaggctctgcactatgactacgagttagctgccatgctgattcctgctggcaataacacactatgatatctgcgaccagcaacagatgacacatgatgtcaagtcaactcctcctttgcacggttgcaacagcaaaaacagctcatctcctctcactgcactgcattgctttactcaccaatctcacgatatggatctgatattaaactaaactgacacgctcgtgcagatgagtttgtctccagtttctggccagcgaggcatgatagccacctcaatgcaagctcaattagagaagagatgctttgtgcattgagcaaagcatacaaatattaaagaaacagaaacctgtcgtgcagatggtggcttctgttgcagcacaaggcttcgccaattattagagagattctttctgtctgctggtccagtaatgagactgcttctccctccttcgttatatatagagaagccatggtttgctgttgacaacattgcaaagcagtctgttctcttccatttctagagagaaacgagtcatcagcttccatcccaaccatggtattccacctcagatccgcgagcgtgccttccagcccttgctccaatgaaaccaacatcgaagaacagctggcgagcctcagggagatcatctgttcaccctctgcaaccatggaaacaatgtgcaatggtttcaggaggcttacagatgtgtacagctgcatggatgagatcatgtgcttgcccagcagccaagctagcctttgcaagcatcagcagaggagagaagtggagaaagagctggagcggtctctcaccttgcttgacctctgcaacgccatgcaagagagcttctctgagctcaaggcaaccacccaggagatgcagttggccatcaagagaggagaagatgcagcagttcagaccaatgttcagtcttacacccgcctgaccaagaaggcacataaacagtgcaagaagatcaacaagaagcctgctagttcagctgatcaggagagctgcagggtggtcaagctgatggctgatgccagagagatcactttctcagtgcttgaatcaactttgcatctcctgtcaaagcagattgcggtgccgagttccagcaagtggtctcttaaggcattccagaagacaagggttacatgccaggaggagcaattacaggtgttggagttggacatcgttgatcttcagagcggagttgagactttgttcaggagattgatccagagcagagtttctcttttgaatgctcttagcttgtagatagatcatacaccaactctaatcccctgtgattggcatccgccttttcgaggatttgctgatcattgaatcaattttgtcatgtgtacataaatgagaggaaatgtacagaaatttatgcgattgaaaaacaaaggatttattccttttgtttaatttcactgtcttccttttccccctcattccacatggatgtcaactgaacaatcacctgacattttgagttcttcagatgaaacttgttcacgaaaggaaatagtaacttaataagaattttcttcatcgatcttggctgttataatatagagatcagtagtaatgcagagttcaaatattagatttacaaagctttaccgtgagatgcccatgtaattactattcacatgtgacgtgcctcaagtacaggcacaagatccttctgcagtggatcttgccttgcatatagcaccatgacagattgccagctcgtacggttgttgataaattattctgcaatcagatgggcagcacagatggcaagttgcaataacactactcgattagcaatctccattggataaatgctggagcttgcacgtatgacaaaggctcaacgctagagtaagctgccatgctgattcctgctgccaataactggaacatgacattgtgattcagttaggcggcctaattgaccagaaatttggacagcacgtggaatcatcttgagattgcaacagatgctaaatgctgtgagcacagcaggcaagccagtgatgcaatgctgcaagatcagtgagcagattctaccagataagaaacacggtttggagcctggagagagaagtcaactgctgctcctgtgagcaaggctcatccttctcatgatctggatctgaatattacattagactatacacttgtgcaggtgaacttgccgccaataatcaggacatgacagcattgtaagctgagctagagatgcctctacacttggttgggaaacataaaaaaacatcagcctgtcgaggagatgggtggcgtctgttgcagcagcaaagcacttcattattattgagatttcattgttgtctacacggtgagggatgccattgcttctgcctctttgtctatatagaggaaagctatagccgggtcgacaccattgcagcacagcattcttctcatcttcacttccacagagaagagaaaaaggataagcttccactgcagccatggcattccacctcagatctgcgagtgtgccatccagcccttgctccaatgaaaccaacgctgaagaactgctgcagagtctaaaggtgaccatttcctcacccagttcaaccatcgagacgatgagcagtggctggaagaagcttgggagtatctacaactgcatcgatgagatcatgtgtctgcccagcagccaagctctcctttgccaaccactgcagaggaaagcagtggagcaagagttagaaggctctctcgtcgtgctagacctctgcaacgccattcacgagagcttttccgggctcaaggcatgcatccaggacatgcagctggctgtcaagagaggagatgatgcagctgtccaagccaagatacagtcttacatccgcctcgccaagaaggggcgaaaacagttcaagcatatcagcaagaagtcttcttcagcagatcaggagagctgcagggtgatcaagctgttggctgaagctagagagatagctctgtcaatgctcgagtcgtcatcacatctcctgtcgaagcagattgctttgccatgctctagcaaatggtctcttgtctccaagacattccagaaaagaaggcttgtctgcgaggaggagcaattgcaggtgttggagttagacattgttgatctagagactggagtcgagaatctgttcagaaaatcaatccagagcagagtttctcttctcaacattctcagcttgtagatagatcatacaccaactctgattccatgcgattagtatccgccttttagaggatttgctgatcactggaacaaaattttgatgtgtacatatatgaaaggaattgtacagaaactcagttgagaaacaaaaacaaagtatttgtccacttcctattgttgattacactgtttatgaatgtttgatataaatacctaattttctaacaatatgctcatcattattgactgttagagaagcagttagcagaattttcaagttcagcttcgaaatgatttactatgatacggcctcgctattcagatgctatgtgctaactcaacaagaagcaaaggatccttgagcagtggatcttgctaccagagctaagacaagccagctccaatgcacgaggttgaatgtgtgagcggcatggattgcacataataaaacaatatttaaattagcaagcacactaaaaactagaagacacacctatcaccaacaatactcagtaccactcccttaaagtaacatcttgaaaacgcaataatgtcaagatccaccaatagagtgaactaaccttctgattcttgcttccaatagttggaacatgacaatgtgatagttcattgggaggatatgtagtgcactaatatatgcagctacacatgagtgacagaatagattctatatgctgctaccagatctcagaccttgatagacagcatctgggagatgaactggagggattctacttgtctgtaaaccaaacgatgctgtcccgtgcagttcctctgtataaataggccttggcagaaggccaaacacatcaaaccaaagcttggactctccttcccatctcctcagccacaacacaacaagaattacatcaacagatatggcttgccaccaaagatcaattagcttgccttctaggactcactccaaagttgaagaagagcttcacatcgtagaggcatccatctcttcaacctcgatgaccattgagatcctctccgatggtttaaagaggcttgaggatatctacagctctgttgagggcatcatgtgcctgcctagcaaccaaatttgctcatcccagcaaaggaagttgttggatggagaaatggaatgctcccttgagctactggatctctgcaatgctatgcatgaggtgtttgctgagttgaaggccatcatccaagatatgcaagtatctcttagaaaaggagatgatgcagttgttcaagctaagatccagtcatacattcgcttgatgaagaaggcaaaaaagcatttcaagaagactgtgaagaaggttacctcagacaaggaggatgacaagatggtcaagctcttgagcaaggctagagagatcacaacctctgtacttgagtcatcaatggacctcttatcgaagcaaatcgcaacaccaaaaatgtctatcatctccaaggcattcctgaagaaaaactcagttgtttgcagtgaggaacagttgcaggtgttagagtgctgcatcggagatcttgaggctggggctggacttgtgttcaggagattggtccagagcagggttactctccttaacat
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CDS seq | atgttaaggagagtaaccctgctctggaccaatctcctgaacacaagtccagccccagcctcaagatctccgatgcagcactctaacacctgcaactgttcctcactgcaaacaactgagtttttcttcaggaatgccttggagatgatagacatttttggtgttgcgatttgcttcgataagaggtccattgatgactcaagtacagaggttgtgatctctctagccttgctcaagagcttgaccatcttgtcatcctccttgtctgagagatccagtagctcaagggagcattccatttctccatccaacaacttcctttgctgggatgagcaaatttggttgctaggcaggcacatgatgccctcaacagagctgtag |
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Protein seq | MLRRVTLLWTNLLNTSPAPASRSPMQHSNTCNCSSLQTTEFFFRNALEMIDIFGVAICFDKRSIDDSSTEVVISLALLKSLTILSSSLSERSSSSREHSISPSNNFLCWDEQIWLLGRHMMPSTEL |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_08g0024740 | OsKeNa_08g0024740.01 | Chr08 | 28813333 | 28823585 | - | NAM | ||
CDS seq | atgttaaggagagtaaccctgctctggaccaatctcctgaacacaagtccagccccagcctcaagatctccgatgcagcactctaacacctgcaactgttcctcactgcaaacaactgagtttttcttcaggaatgccttggagatgatagacatttttggtgttgcgatttgcttcgataagaggtccattgatgactcaagtacagaggttgtgatctctctagccttgctcaagagcttgaccatcttgtcatcctccttgtctgagagatccagtagctcaagggagcattccatttctccatccaacaacttcctttgctgggatgagcaaatttggttgctaggcaggcacatgatgccctcaacagagctgtag
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Protein seq | MLRRVTLLWTNLLNTSPAPASRSPMQHSNTCNCSSLQTTEFFFRNALEMIDIFGVAICFDKRSIDDSSTEVVISLALLKSLTILSSSLSERSSSSREHSISPSNNFLCWDEQIWLLGRHMMPSTEL |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_08g0024740 | OsKeNa_08g0024740.03 | Chr08 | 28812446 | 28813867 | - | NAM | ||
CDS seq | atgttgaggagagtaaccctggtctggatcaatctcctgaacagaagtcctgctccagcctcaagatctccgatgcagcactctaatgcctgcaactgctcctcattgcaaatcaccaggtttttcttctggaatgccttggggatgagagatgattttggcattgtaatttgctttgacaagaggtacaatattgactcgaatagtgaggtagtgatctctctagcctcgctcatcagcttcactatcctgcagtcgttgtctgagacaaccttcttcacagtcttcttggaatgcttcttcgcgttcttcatcaagcggatgaatgactggatcttggcttga
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Protein seq | MLRRVTLVWINLLNRSPAPASRSPMQHSNACNCSSLQITRFFFWNALGMRDDFGIVICFDKRYNIDSNSEVVISLASLISFTILQSLSETTFFTVFLECFFAFFIKRMNDWILA |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_08g0024740 | OsKeNa_08g0024740.02 | Chr08 | 28812446 | 28822997 | - | NAM | ||
CDS seq | atgttgaggagagtaaccctggtctggatcaatctcctgaacagaagtcctgctccagcctcaagatctccgatgcagcactctaatgcctgcaactgctcctcattgcaaatcaccaggtttttcttctggaatgccttggggatgagagatgattttggcattgtaatttgctttgacaagaggtacaatattgactcgaatagtgaggtagtgatctctctagcctcgctcatcagcttcactatcctgcagtcgttgtctgagacaaccttcttcacagtcttcttggaatgcttcttcgcgttcttcatcaagcggatgaatgactggatcttggcttga
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Protein seq | MLRRVTLVWINLLNRSPAPASRSPMQHSNACNCSSLQITRFFFWNALGMRDDFGIVICFDKRYNIDSNSEVVISLASLISFTILQSLSETTFFTVFLECFFAFFIKRMNDWILA |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
AF | Chr08 | 28813643 | 28822997 | - | OsKeNa_08g0024740.03 | OsKeNa_08g0024740.03,OsKeNa_08g0024740.02 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 0.000000 | 0.000000 | 0.445049 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0552633 | SBH | 0.0 | 0.0 | 0.000000 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43815 | SBH | 0.144332 | 0.305114 | 0.415471 |
Nipponbare | IRGSP 1.0 | RAP-db | Os08g0552633 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024880 | SBH | 0.000000 | 0.000000 | 0.000000 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024660 | SBH | 0.000000 | 0.000000 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024660 | SBH | 0.000000 | 0.000000 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024900 | SBH | 0.167979 | 0.259811 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024590 | SBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024420 | SBH | 0.071184 | 0.171945 | 0.039374 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023800 | SBH | 0.000000 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024160 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023980 | SBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024930 | RBH | 0.000000 | 0.260335 | 0.356277 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024200 | RBH | 0.128326 | 0.826165 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024340 | SBH | 0.000000 | 0.000000 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024460 | SBH | 0.0 | 0.000000 | 0.000000 |