Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0009830 | OGI:08032260 | 9/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:11523248-11531203 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaagtgcacaaaagacaggtaaggaaacagtggcattatttaagttgttagcaggaacggcagaaaccatagttattagtCctggagatcttcagaaggaaataagactaggatcagctcgcgaaccgctgcgccaagctggcacatgttaacaaagcggacagtggttcaaataggtagggaaacgaccgaggttAacgataaatcctagcatgaacggaactccggcattagaagggggctactgtaacatcctgaaggaagaaaaatgatgaaggttaacgaaaaactgatggtcatacaatcagaacagaataaggggcaaagATtttgtaacgtgaagaatgattcacgagaaatCcccttacttcacagcgatgatcacccagaaagatcagcattgcattatgtacatggtgtacagcagccacatataacttgttacctaccagacaaTtttggataagacagagagagcatctccagggtttaacttgcacatgcgcacggggagaaagagatagctgaccttctatacaaagccttgatatcctggcgaatagcattagCctccaatagttcatcttcagagtcatcaatatcaacttgattcagtttgaagtcttcagtagtgcagagctcactccattCaaaccatagctttgggataacttctttcttgaatgcagtttctggaacttcacctctggagaatcagcagcaacaagctgtacacaaacactttttctgctgtcgggcctgaatgcacgtccgatgcttgacgggtgacagatgggttcaaatgaacatctagaatgatgactcgagatgcaccaacaagggagattccctctcacaggccttgatggaaccaaacaaaactttgcatcggcagagttgttaaactgatccatcgccacttctctgtcgtctgcactagtatcaccagatatcatgaaaatctccttccctacatgccagcccagcctcttaaccaacaacctttccaaaaatttcatgggaagtatatattgactgaagcaagcaacttctctcctgcagagtagcaagagacataatgttaaagaaaaacttggcTttcaccccatctttaatgatgatagactcaatcaagctgtcaacagtggcatctgtcaaGttgctcgccctatctgcagcatcaccctctgaaatttctgacaggcagggatgaatgtacaatgcagtccccactgcacttcttttgaacttttcATaagcttctatcTggtgtcTtttgaatgttgagaaTataggcatataatgatttaatatattccataaataaatcatgacaTtacagatatatactagcattaacgtatcattagatctacacatgtaaactaagcagtaaaacatgaacagatcaaatatgcgcaacatgTtgaacacgtaccgaggtggcggaaagaccggttgctcGgcaggaactacttgCggttgcgagcgtcgacgaaggcgtgcagcacgcgagcggagaggaaggcgagccgtcgtggttgaacagggagcagtcgcacgaagcgcttCccaaaaaccttattgccgccttctcccggtgcaggacgtcgaaggcagaggttccgtagacctgctctcccgaTCgccggtgcacgctggtgagcgggatggagtagtccacgagcgacgacgcaacacagagaaggaggcAaaccctaaaTtgatttcgcgtgtgttgcgtgaaggcggtggcacggtttatatagagataggttgcttgatcagggcgcccgcacgatcTccaCtctgcgtaaccgagccggataagtcgcgcgtaacttatccggactccacgccattttcacgcaccggatttttcggaatgttttcaacaacaaAaCaaatccgaattttcctgcagccaaacaaaactgcaaaaggaggctgcttctgcgcaagggtgaggagccaatttttcggaccattcgacgcatacgtcgtgcacgcgcgccgCctgCcctgccctgCcaggccaggcgagcgcgcgcgtgtgttccccttcttttctccaCcaCacatgcttgaagtggctaggagggcatcatcccttttaagaaggtccccctctctagaataagaggtggtactaaaacccacatgcatgccatcccatgaggtgggcttttgtgattttttcaaagaattaatctcgaatgggccttagccatatctattaatcccaacaatcccaccaaatctcaaaatcccactgagatttccttttccaatgtactgtttatataccagcggcgatggagaccgattaaggttgaacatccacctaagaactccaagctacacttactcacaactgaacaatggactacgccttgaattgcaagtcttgtgcaagcagttcaatcagagtcttatctggtactagactgtctgtagaatactcctcgggtggagcgtataagtcatactctaggtctttagtaagcttcctagagattcacccaaaatcttcatagactgcgaccaacagacaagcttacAaaggTaagttctttcaagaatgctctgcaggacagcatcttcgctaattaaagccaacagaaCtcattaaggcacatccaacctgccttgcagctcacgagagtacatacatcttcacttagaagggttagatggtactctcctctagtttactaatggtttgttcttcccaggttctaattcacggatctccgatcatagataagggtaccaccataggataaatcacatgggtctcaaacccatctccttcgatgcattatctatcacatttcgtgatagttccttcgtgaagggattgctaggtttctagctgtttggatgtaatccaccgtatataactccggagtttctcaatttcctgacagattcaatcgtcttttcacatgtctagacgatttcatattatccttagaactattcattttgacaattatcgtttgattgtcacagttcataaggatgcggcaccggtttttcaacaataggcagatccattaatagatcacgcagcaccttctgcctcaacagtagcagtatccagtgccgtcagttctgcttccatgattgacctcatcaaaatagtctgtttgcaagacctccacgaaacagcaccaCcacccagtgtgaagacatatccactagtggctttgatctcatccacatcagagatccagttagaaccactatattcctccagtaCcgcaggataCctagAatattgaagccccaattccatagtacctttcagatagcgcattactcgctcaagcgcacgccagtgatcatctcccggattagaggtaaaccggctCaacttgctcacagcaaaggagatatcaggcctagttgcactagccaggtacatcagtgagccaatgatttgggagtattccagttgattccttgcaattcccttgttcttgcgaagcaacaagctaggatcataaggtgttggagaaggcttactatcaatgtagtcaaagcgattcaagatcttctccacataatgggaatgcaagagtgtaatcccattctcacctcaattagcttaatgttttaagataacatcagctatcccaaatcctttcatatcaaattttgagacaagaatgattaacctcatttatcacctcaagatttgtcctaaatatcagtatgtcatcaacatacagcacagaataaactccctcacccccactatggtgatagtacacatattatctgcctcattgactgcaaagctgcagatgttaatgttttgtcaaatttctcatgccattgcttaggagcttgtttcagaccatacaaagacttcaacaatttgcAcactttgtcttctcaactacaaacccatcaggttgatccatatagatctcctcatccagctctccattaagaaaagttgtcttaacgtccatttgatgaatgagaagaccatgtgaggctgctaggaaagtagcacacgaaatttggtccatctagcaacaggtgagtaagtggcaaagaatcttcgccttctttctgagtatagcccttagcaacacagccgagccttatacttgttcaatagtatcgtcaggcctgagcttcttcttgaacacccacttgcaccccacggtttacacccatagggtcgctctgtcacctccaagtcccgttagcgataatggaatccatttctacggacatcctccttcagtagtatgcatcaggagatgcgtatggcttctgaaattgacttaggagtgtcatccacgagggtacacagtgaaatcatcacaaaagacttagccgtcctttgtcttttgcctttgaggagcttcacTgtcatcctcgtcagtAaaattttcatgtgtatgttcagtttgttctggtggtgtgactgaactgggaattatttcagaggtttgactagaaactctatgtgtatccttcattgggaaaaagctctcaaagaggtagcatcacgagactccataattgtaccaacatgcatgtcaggtacctcagatttgaCtattaaaaatctataggcaatgctgtggtgagcatatcccagaaagacacagtccatagTCttaggtccaagtttgcgcttcttcgttattggtatattgactttcgccaagcacccccatgtgcgcaagtaagaaagtgatggttttctcccaaatccatatctcatatggtgttttgtcctcatttctattaggaactctgtttaacacatgattcaaggtcaacaatgcctccccccaccatgccttaggtAatcccgcggtgtccaacatagcattcaccaagtcggttagtgtgcggttcttcctttcagcaatcccattagactcgggagaataggggggcgtcctctcatgtataatgccatgttcctcacagaataagtcaaactcgtttgagaaaaactctctaccacgatcagacctaagtctttttatctttctgtcaagttgattttcaacttctgccttataaattttaaaatagtctagagcctcgtctttcgttttcaacaagtacacatagcaaaatctagtagcatcatcaatcaacgtcatgaaatatcgttttccaCccttcgtcaacaccccattcatttcacagagatctgagtgtaggagttctagaggtgccaagtttctctcctcagcagccttgtgaggcttgcgaggttgctttgattgcacacaactatggcacttagaacctttgacaatggaaaacttataaattaaacacatgctggaaagccgagacatcaagccaaaattaatatgacataaacgtgagtgctatacattagcctcatcatccacactgccacaaatatggttcacagacttattgcagaaattagaaagggaaaagcggaataggcctccgcactcataacctttaccaataaaatatccatgtttAGacacgACtactttattagactaaaaaaccaacttaaatccgtctctagtcagacgggagccactaacaagattcctgtcgatagaaggtacatgctacacgttctgcagctgcacgatctttcctgaagtaaacttcagatctaccgtgccaacaccatgaacagaaccatgtgacccattccctattaggacggtggaaccccgtgcgacctgataagaAGaaaacaatgagatgtcaacacaaatatgtacattggcccctgtatcaacccaccaattagtagactgattaactgaaaaaatagtaggtaaattaccatacccgcttccatctccagtgttgccaatggtcacattagcagacttagaggtctgtcctgcaggtgccttcatccccttgtgttgtggacacttcctggccagatggccaggttgaccacacacaaagcaagtcctctcatCctgattaggattgttgtttttcttcttcttattgaagttggtggtctgctgagctttgtatttccccttgctcttgTtttgggccttgtgcacaacattggtagtggactgcccaccatcgcccttagacgcgacatctttttcccgagctttctcctcaacatcaggagacgctatcaacccctcaacggagtattcctgtctcttgtgtttgagtgcagtaccgaaacctctccaagatggaggtagtttcgcaataatgcacccggccacaaatttgtcgggtaagacacacttaaggagtttgagttccttagccatggtttgtatgttatgagcctgttcgactacagaacggttgtcagccatcttgtagacatgaaactgctccatgatatacagatcattgctagcatcagtagcaccaaatttagtattcagtgcatcccacaactctgtagcgtcggtcatatgcatatacacctcgaccagacgatcgccaagcacgctaagaatgcatcccacaaaaagagtagtggcctcatcgaattcTttctgctgatcagcattaagaacgcccataggcttgccagtagtcacccagaagcatttcatagctgtcagccatagattgaccctgatctgccatctcttaaagtgcacactggtaaatttatccggcctgagtgcatcggcaaaaccagccatagtaaaatcacagcgcctataataaggtttttggaatgttgagaatataggcatataatgatttaatatattacataaataaatcatgacattacagatgtatactagcattaacgcatcattagatctacacatgtaaactaagtagtaaaatatgaacagatcaaatatgcgcaacatgtcgaacacgtactgaggtggcggaaagaccggttgctcggcaggaactactcgcggttgcgagcgtcgacgaaggcgcgcagaacgcgagtggagaggaaggcaagccgtcgcggtcgaacagggagcagtcgcgcgaagcgcttcctaaaaaccttattgccgccttctcccggtgcaggacgtcgaaggcagagattccggagacctgctctcccgatcgccggtgcacgctggcgagcgggatggagtagtccacgagcgacggcgcaacacagaggaggaggcaaaccctagattgatttcgcgtgtgttgcgtgaaggcggtggcacggtttatatagagataggtcgcttgatcagggcgcccgcacgatctccactctgcataaccgagccagataagtcgcgcgtaacttatccggactccacgccgttttcacacaccggatttttcggaatgttttcaacaacaaaacaaatccgaattttcctgcagcaaaacaaaactgcaaaaggaggctacatctgcgcaagggtgaggagccaatttttcggaccattcgacacgtacatcgtgcacacgcgccgcctgccaagcgaggcaatctagcgcgtgcgtgttgcccctcttctctccaccacacatgcttcaagtggctaggagggcatcctctcTtttaaggaggtcctcctctcctagaataagtaaggtggtactaaactccacatgcatgccatcccatgaggtgggcttttgtgattttccaaagaattaatcttcgaatgggccttagcccatctattaattccaacagtgaacaatttctttcagcttgttactgagtttcaagaacacactaaaatccactaggccagatagttcatctaagatattgcccttgtaatagtgaagcacatcttttgttaattctctaagacttctaataacatgggcttttctagtgaagttgtcatcattcagcagggtgtcttccactgactcagtgaatgcactgtcatgaaccccttttaaactcctgatacctgatattgatacctgactcattatacgtctagcaataggacgggacgattccat
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| CDS seq | atggaatcgtcccgtcctattgctagacgtataatgagtcaggtatcaatatcaggtatcaggagtttaaaaggggttcatgacagtgcattcactgagtcagtggaagacaccctgctgaatgatgacaacttcactagaaaagcccatgttattagaagtcttagagaattaacaaaagatgtgcttcactattacaagggcaatatcttagatgaactatctggcctaggtgatgctgcagatagggcgagcaaCttgacagatgccactgttgacagcttgattgagtctatcatcattaaagatggggtgaaAgccaagagagaagttgcttgcttcagtcaatatatacttcccatgaaatttttggaaaggttgttggttaagaggctgggctggcatgtagggaaggagattttcatgatatctggtgatactagtgcagacgacagagaagtggcgatggatcagtttaacaactctgccgatgcaaagttttgtttggttccatcaaggcctggaatctcccttgttggtgcatctcgagtcatcattctagatgttcatttgaacccatctgtcacccgtcaagcatcggacgtgcattcaggcccgacagcagaaaaagtaggtgaagttccagaaactgcattcaagaaagaagttatcccaaagctatggtttGaatggagtgagctctgcactactgaagacttcaaactgaatcaagttgatattgatgactctgaagatgaactattggagGctaatgctattcgccaggatatcaaggctttgtatagaaggatgttacagtag
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| Protein seq | MESSRPIARRIMSQVSISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELTKDVLHYYKGNILDELSGLGDAADRASNLTDATVDSLIESIIIKDGVKAKREVACFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNNSADAKFCLVPSRPGISLVGASRVIILDVHLNPSVTRQASDVHSGPTAEKVGEVPETAFKKEVIPKLWFEWSELCTTEDFKLNQVDIDDSEDELLEANAIRQDIKALYRRMLQ |
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| Function | Protein CHROMATIN REMODELING 35 [UniProtKB/Swiss-Prot:Q9SIW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0009830 | OsLaMu_08g0009830.01 | Chr08 | 11523248 | 11531203 | - | NAM | ||
| CDS seq | atggaatcgtcccgtcctattgctagacgtataatgagtcaggtatcaatatcaggtatcaggagtttaaaaggggttcatgacagtgcattcactgagtcagtggaagacaccctgctgaatgatgacaacttcactagaaaagcccatgttattagaagtcttagagaattaacaaaagatgtgcttcactattacaagggcaatatcttagatgaactatctggcctaggtgatgctgcagatagggcgagcaaCttgacagatgccactgttgacagcttgattgagtctatcatcattaaagatggggtgaaAgccaagagagaagttgcttgcttcagtcaatatatacttcccatgaaatttttggaaaggttgttggttaagaggctgggctggcatgtagggaaggagattttcatgatatctggtgatactagtgcagacgacagagaagtggcgatggatcagtttaacaactctgccgatgcaaagttttgtttggttccatcaaggcctggaatctcccttgttggtgcatctcgagtcatcattctagatgttcatttgaacccatctgtcacccgtcaagcatcggacgtgcattcaggcccgacagcagaaaaagtaggtgaagttccagaaactgcattcaagaaagaagttatcccaaagctatggtttGaatggagtgagctctgcactactgaagacttcaaactgaatcaagttgatattgatgactctgaagatgaactattggagGctaatgctattcgccaggatatcaaggctttgtatagaaggatgttacagtag
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| Protein seq | MESSRPIARRIMSQVSISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELTKDVLHYYKGNILDELSGLGDAADRASNLTDATVDSLIESIIIKDGVKAKREVACFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNNSADAKFCLVPSRPGISLVGASRVIILDVHLNPSVTRQASDVHSGPTAEKVGEVPETAFKKEVIPKLWFEWSELCTTEDFKLNQVDIDDSEDELLEANAIRQDIKALYRRMLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0243866 | SBH | 0.241368 | 0.000000 | 1.178889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g19250 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0243866 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010140 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0010240 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010330 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010210 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010100 | SBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0175700 | SBH | 0.204854 | 0.725343 | 1.823581 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010140 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0177800 | SBH | 0 | 1.2309945 | 0.720126 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009700 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0009870 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0009730 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010500 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010050 | SBH | 1.235928 | 8.531486 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009980 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0009950 | RBH | 0.0 | 0.0 | 0.000000 |
