Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0243866 | OGI:08025020 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:8789627-8792452 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATACCACATTTCAGAGCAATGATCATGTCATAGGATCAGCAATACAATGTGCACATGGGTGTACAACAGCCAGCCTGCCTGCCTGCTTGCTTGTTTACCTACAAAGAGAATTCATGATTAGAATGACTTATAGAGTTCATTGTCTAAAAAAACTTATTTTTTTTAAAAAAAATAGCTTGCATAGTTCTAGAATAGAATGGAAGGAGAGAGAGAGAGAGAGAGCAAGGCAAACATTTCACCTTTGATACAAAGCCTTGATATCCTGACGAATAACATCAGTCTCCAACAATTCATCTCTGGAGCCATCGATACAGACTTGATTCAGCTTGAAGTCTTCAGTTGTGCAGCGCCCGCTCCATTGGAACCATAGCTTTGGTATGACTTCCTTGTTGAATGCAGTTTCATGGGCCTTCTCCTCTGGAGAATCAGCAGCTACAAGTCTATACACAAACACTTTCTTCTTCTGTCCAGGCCTGAATGTGCTCCCGATGGCTTGGCGCGTAACAGACGGGTTCAGGTGAACATCTAGGATGACAATTCTTGATGCACCCACAAGGGAGATGCCCTCCCCAAATGCCTTGATGGAACCAAACAGAACTTTTGCATCGGCAGAGCCGTTGAACTGATCCATTGCCAATTGTCCATCTTCCATGCTAGTATCACCATTTATCACAAAAATTTCCTTCCCTACATGCCAGCCCATCTCCTTAACCAGCAGCCTTTCCAAAAATTTCATGGGGAGTGTATACTGACTAAAAGCAACTAATTTCTCTCCTGCAGAGTTGGCAAGCGCAAGGATGTTCAGAAAAAACCTGGCCTTCACCCCATCTCCCAGGTTGATGCTGTTGACCAAACTATCAACTCTGTCATCCCTATCAACATCATTAGCTTCAGAAATTTCTGAAAGGCAAGGGTGAACATAGAGTGCAGCCCCTACAGCGCTTGTTTTGAGCATCCCATGGTCTTCTTCTAACTTGCAAAGAATGTCTTTCTGCTTGGGACTGAGTTCCAAGAACACACTGAAGTCTAGTAAGACAGGAAATTCATTCAAGTCCTCACCCTTACAGTAGTGAAGCACATCTTTGGTTAGTTCTCCAAGACTTCTGATAACATTAACTTTTCTTGTGAAGTTATCATCATTCAGCAGGGTATCTTCCATTGACTCAGAGATCTCTGTTATACTCCTGGCACTTGATATTTCTAGTTGACCCATCATACGTGTAACAATGGGCCAGAATGTCTCCGTCTTGAGAAAACCTGGGCGTACAAGATCCAAGGTGTTAAACACTTCCTTGACATGATTATGGAAGAGTGTACCAGACATGACCACTTTGCATGGCGTTTGCACTTTGCGCGCAGATTGTAGCATATCAGTCTCATCAATGCTAGGTGTATGGCCCTCATCAAGTATCAACAAGCTGGGGACCATAAGAAGCGTGTCCCTGCATTCAGCTACAGCATTTTCATCCCTATCATCGCAGACAATTTGGGTGAAATGCTTGGATCCAACAAAGAGTATGCTCCTCTTAGAGCTCCAAGATTTTAGGACTTCCAGTTGCTCTACTCTATTGTCAGCCTTAATAGAATCGAAATCATACAGTGGTATGTCCTCCACTTGCCACTGCTGGAATTCTCTCTTCCATGTACCTAATATCCCTTCAGGAAGCACAACAAGGGGCCTTGCAGTGAAATGTCTTGCCATGAAGCCTTGAATGAAACTGATAAGCATAAATATTTCCCCTGAACCTGGGGCATGAACAAGAATGCAGCCTCCAGGTTCATCAGTGACCAAGTTATTAACCAGGAATTTGAATCCTTCCAACTGATGAGGCCGGATATTCTTGGCATGTCTTGGATGAATGGCAATATCTGAAAATATGAAATCTTCAGAGAGACTAATAGCATCAGAGCCTACCTTCTTCAAGCAAACCTCATTCACATTTGTTCTTTTCCTTGAAGCCTGATATGAAGTGAACATTAGAAACACTTTTCCAAATTATATACTCTTCTATCTAAATGTTACACATTCGAATTTTCAAGATCGCCAAGTAAAACTTGATAATAGTGTATGAAAGTATTCCAAGTTGCACTAAATGAAAAGGAAACAAGTAAATAAATCCACCACAATACTGACAAATATACTACCACAAGTCAGAAGTTTTTGAGGAAATGGAAGTTATATAGAAGTTAAGTAGTTTTTCTAAAACATTGTTAGCATTTTTATTACTATATATTTCACAAATTCTTCTTCACTTTGACATCCTCTTCCATCGTCACTGTCATGACTTTGAAAGCATCTAATTTGCTCCACTTGTACCATGGGCATAAGAGATATTAGGAGGAAGGGTGATGTGTACAACAATGCAAATGTATAGCTAACAGTAGGCATGGAGGTTTCATGTCGAAAATTAATTTGCAGGGTCTGTATCTCTAATGGGGGACTAAAAAGAACTCCCTAAAGGTGTGTGCTTTTCCTCTTAAAGAAAGAAAAACAAAAAAGGTGTGCACACTCATATTTTTCACCAATTGTAGTTACAAGCATATATAGAGCATCTTGTTTTTGCAAAATGAACAAAAATTTAACCTCATAACTTAAGCAAATTACGAACCTTTTTCCACTGATAGTGAAATAATGAGTCAGCTTTCCTCACGACCAAACCACATTCATGGCATACATGGCCCAGATCTTCATAAACATGAATATCGTGGTTGCAATTGTCCAACTGTTTTTTATTATTCACTTCTGATGTGTCGAGCTGTCCAAAACATATAATTAGAATACAAACTAAACAAAGATTGACTTCAAAAGCATGTATTTTGTGGTT
More
|
||||||||||
| CDS seq | AACCACAAAATACATGCTTTTGAAGTCAATCTTTGTTTAGTTTGTATTCTAATTATATGTTTTGGACAGCTCGACACATCAGAAGTGAATAATAAAAAACAGTTGGACAATTGCAACCACGATATTCATGTTTATGAAGATCTGGGCCATGTATGCCATGAATGTGGTTTGGTCGTGAGGAAAGCTGACTCATTATTTCACTATCAGTGGAAAAAGGCTTCAAGGAAAAGAACAAATGTGAATGAGGTTTGCTTGAAGAAGGTAGGCTCTGATGCTATTAGTCTCTCTGAAGATTTCATATTTTCAGATATTGCCATTCATCCAAGACATGCCAAGAATATCCGGCCTCATCAGTTGGAAGGATTCAAATTCCTGGTTAATAACTTGGTCACTGATGAACCTGGAGGCTGCATTCTTGTTCATGCCCCAGGTTCAGGGGAAATATTTATGCTTATCAGTTTCATTCAAGGCTTCATGGCAAGACATTTCACTGCAAGGCCCCTTGTTGTGCTTCCTGAAGGGATATTAGGTACATGGAAGAGAGAATTCCAGCAGTGGCAAGTGGAGGACATACCACTGTATGATTTCGATTCTATTAAGGCTGACAATAGAGTAGAGCAACTGGAAGTCCTAAAATCTTGGAGCTCTAAGAGGAGCATACTCTTTGTTGGATCCAAGCATTTCACCCAAATTGTCTGCGATGATAGGGATGAAAATGCTGTAGCTGAATGCAGGGACACGCTTCTTATGGTCCCCAGCTTGTTGATACTTGATGAGGGCCATACACCTAGCATTGATGAGACTGATATGCTACAATCTGCGCGCAAAGTGCAAACGCCATGCAAAGTGGTCATGTCTGGTACACTCTTCCATAATCATGTCAAGGAAGTGTTTAACACCTTGGATCTTGTACGCCCAGGTTTTCTCAAGACGGAGACATTCTGGCCCATTGTTACACGTATGATGGGTCAACTAGAAATATCAAGTGCCAGGAGTATAACAGAGATCTCTGAGTCAATGGAAGATACCCTGCTGAATGATGATAACTTCACAAGAAAAGTTAATGTTATCAGAAGTCTTGGAGAACTAACCAAAGATGTGCTTCACTACTGTAAGGGTGAGGACTTGAATGAATTTCCTGTCTTACTAGACTTCAGTGTGTTCTTGGAACTCAGTCCCAAGCAGAAAGACATTCTTTGCAAGTTAGAAGAAGACCATGGGATGCTCAAAACAAGCGCTGTAGGGGCTGCACTCTATGTTCACCCTTGCCTTTCAGAAATTTCTGAAGCTAATGATGTTGATAGGGATGACAGAGTTGATAGTTTGGTCAACAGCATCAACCTGGGAGATGGGGTGAAGGCCAGGTTTTTTCTGAACATCCTTGCGCTTGCCAACTCTGCAGGAGAGAAATTAGTTGCTTTTAGTCAGTATACACTCCCCATGAAATTTTTGGAAAGGCTGCTGGTTAAGGAGATGGGCTGGCATGTAGGGAAGGAAATTTTTGTGATAAATGGTGATACTAGCATGGAAGATGGACAATTGGCAATGGATCAGTTCAACGGCTCTGCCGATGCAAAAGTTCTGTTTGGTTCCATCAAGGCATTTGGGGAGGGCATCTCCCTTGTGGGTGCATCAAGAATTGTCATCCTAGATGTTCACCTGAACCCGTCTGTTACGCGCCAAGCCATCGGGAGCACATTCAGGCCTGGACAGAAGAAGAAAGTGTTTGTGTATAGACTTGTAGCTGCTGATTCTCCAGAGGAGAAGGCCCATGAAACTGCATTCAACAAGGAAGTCATACCAAAGCTATGGTTCCAATGGAGCGGGCGCTGCACAACTGAAGACTTCAAGCTGAATCAAGTCTGTATCGATGGCTCCAGAGATGAATTGTTGGAGACTGATGTTATTCGTCAGGATATCAAGGCTTTGTATCAAAGGTGA
More
|
||||||||||
| Protein seq | NHKIHAFEVNLCLVCILIICFGQLDTSEVNNKKQLDNCNHDIHVYEDLGHVCHECGLVVRKADSLFHYQWKKASRKRTNVNEVCLKKVGSDAISLSEDFIFSDIAIHPRHAKNIRPHQLEGFKFLVNNLVTDEPGGCILVHAPGSGEIFMLISFIQGFMARHFTARPLVVLPEGILGTWKREFQQWQVEDIPLYDFDSIKADNRVEQLEVLKSWSSKRSILFVGSKHFTQIVCDDRDENAVAECRDTLLMVPSLLILDEGHTPSIDETDMLQSARKVQTPCKVVMSGTLFHNHVKEVFNTLDLVRPGFLKTETFWPIVTRMMGQLEISSARSITEISESMEDTLLNDDNFTRKVNVIRSLGELTKDVLHYCKGEDLNEFPVLLDFSVFLELSPKQKDILCKLEEDHGMLKTSAVGAALYVHPCLSEISEANDVDRDDRVDSLVNSINLGDGVKARFFLNILALANSAGEKLVAFSQYTLPMKFLERLLVKEMGWHVGKEIFVINGDTSMEDGQLAMDQFNGSADAKVLFGSIKAFGEGISLVGASRIVILDVHLNPSVTRQAIGSTFRPGQKKKVFVYRLVAADSPEEKAHETAFNKEVIPKLWFQWSGRCTTEDFKLNQVCIDGSRDELLETDVIRQDIKALYQR |
||||||||||
| Function | Protein CHROMATIN REMODELING 35 [UniProtKB/Swiss-Prot:Q9SIW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0243866 | Os08t0243866-00 | Chr08 | 8789627 | 8792452 | - | irgsp1_rep | ||
| CDS seq | AACCACAAAATACATGCTTTTGAAGTCAATCTTTGTTTAGTTTGTATTCTAATTATATGTTTTGGACAGCTCGACACATCAGAAGTGAATAATAAAAAACAGTTGGACAATTGCAACCACGATATTCATGTTTATGAAGATCTGGGCCATGTATGCCATGAATGTGGTTTGGTCGTGAGGAAAGCTGACTCATTATTTCACTATCAGTGGAAAAAGGCTTCAAGGAAAAGAACAAATGTGAATGAGGTTTGCTTGAAGAAGGTAGGCTCTGATGCTATTAGTCTCTCTGAAGATTTCATATTTTCAGATATTGCCATTCATCCAAGACATGCCAAGAATATCCGGCCTCATCAGTTGGAAGGATTCAAATTCCTGGTTAATAACTTGGTCACTGATGAACCTGGAGGCTGCATTCTTGTTCATGCCCCAGGTTCAGGGGAAATATTTATGCTTATCAGTTTCATTCAAGGCTTCATGGCAAGACATTTCACTGCAAGGCCCCTTGTTGTGCTTCCTGAAGGGATATTAGGTACATGGAAGAGAGAATTCCAGCAGTGGCAAGTGGAGGACATACCACTGTATGATTTCGATTCTATTAAGGCTGACAATAGAGTAGAGCAACTGGAAGTCCTAAAATCTTGGAGCTCTAAGAGGAGCATACTCTTTGTTGGATCCAAGCATTTCACCCAAATTGTCTGCGATGATAGGGATGAAAATGCTGTAGCTGAATGCAGGGACACGCTTCTTATGGTCCCCAGCTTGTTGATACTTGATGAGGGCCATACACCTAGCATTGATGAGACTGATATGCTACAATCTGCGCGCAAAGTGCAAACGCCATGCAAAGTGGTCATGTCTGGTACACTCTTCCATAATCATGTCAAGGAAGTGTTTAACACCTTGGATCTTGTACGCCCAGGTTTTCTCAAGACGGAGACATTCTGGCCCATTGTTACACGTATGATGGGTCAACTAGAAATATCAAGTGCCAGGAGTATAACAGAGATCTCTGAGTCAATGGAAGATACCCTGCTGAATGATGATAACTTCACAAGAAAAGTTAATGTTATCAGAAGTCTTGGAGAACTAACCAAAGATGTGCTTCACTACTGTAAGGGTGAGGACTTGAATGAATTTCCTGTCTTACTAGACTTCAGTGTGTTCTTGGAACTCAGTCCCAAGCAGAAAGACATTCTTTGCAAGTTAGAAGAAGACCATGGGATGCTCAAAACAAGCGCTGTAGGGGCTGCACTCTATGTTCACCCTTGCCTTTCAGAAATTTCTGAAGCTAATGATGTTGATAGGGATGACAGAGTTGATAGTTTGGTCAACAGCATCAACCTGGGAGATGGGGTGAAGGCCAGGTTTTTTCTGAACATCCTTGCGCTTGCCAACTCTGCAGGAGAGAAATTAGTTGCTTTTAGTCAGTATACACTCCCCATGAAATTTTTGGAAAGGCTGCTGGTTAAGGAGATGGGCTGGCATGTAGGGAAGGAAATTTTTGTGATAAATGGTGATACTAGCATGGAAGATGGACAATTGGCAATGGATCAGTTCAACGGCTCTGCCGATGCAAAAGTTCTGTTTGGTTCCATCAAGGCATTTGGGGAGGGCATCTCCCTTGTGGGTGCATCAAGAATTGTCATCCTAGATGTTCACCTGAACCCGTCTGTTACGCGCCAAGCCATCGGGAGCACATTCAGGCCTGGACAGAAGAAGAAAGTGTTTGTGTATAGACTTGTAGCTGCTGATTCTCCAGAGGAGAAGGCCCATGAAACTGCATTCAACAAGGAAGTCATACCAAAGCTATGGTTCCAATGGAGCGGGCGCTGCACAACTGAAGACTTCAAGCTGAATCAAGTCTGTATCGATGGCTCCAGAGATGAATTGTTGGAGACTGATGTTATTCGTCAGGATATCAAGGCTTTGTATCAAAGGTGA
More
|
|||||||
| Protein seq | NHKIHAFEVNLCLVCILIICFGQLDTSEVNNKKQLDNCNHDIHVYEDLGHVCHECGLVVRKADSLFHYQWKKASRKRTNVNEVCLKKVGSDAISLSEDFIFSDIAIHPRHAKNIRPHQLEGFKFLVNNLVTDEPGGCILVHAPGSGEIFMLISFIQGFMARHFTARPLVVLPEGILGTWKREFQQWQVEDIPLYDFDSIKADNRVEQLEVLKSWSSKRSILFVGSKHFTQIVCDDRDENAVAECRDTLLMVPSLLILDEGHTPSIDETDMLQSARKVQTPCKVVMSGTLFHNHVKEVFNTLDLVRPGFLKTETFWPIVTRMMGQLEISSARSITEISESMEDTLLNDDNFTRKVNVIRSLGELTKDVLHYCKGEDLNEFPVLLDFSVFLELSPKQKDILCKLEEDHGMLKTSAVGAALYVHPCLSEISEANDVDRDDRVDSLVNSINLGDGVKARFFLNILALANSAGEKLVAFSQYTLPMKFLERLLVKEMGWHVGKEIFVINGDTSMEDGQLAMDQFNGSADAKVLFGSIKAFGEGISLVGASRIVILDVHLNPSVTRQAIGSTFRPGQKKKVFVYRLVAADSPEEKAHETAFNKEVIPKLWFQWSGRCTTEDFKLNQVCIDGSRDELLETDVIRQDIKALYQR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0243866 | RBH | 0.241368 | 0.000000 | 1.178889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g14610 | RBH | 0.095795 | 0.025115 | 0.253935 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008340 | RBH | 0.033396 | 0.609112 | 0.685795 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008400 | RBH | 0.046902 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008500 | RBH | 1.458778 | 27.891726 | 24.602667 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008470 | RBH | 0.049063 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008320 | RBH | 1.133675 | 3.069562 | 3.888139 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0139200 | RBH | 5.4870605 | 9.9302505 | 21.6928845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008320 | RBH | 0.091529 | 0.126266 | 0.245832 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0132400 | SBH | 3.11243 | 4.856335 | 6.517291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007950 | RBH | 0.040705 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008040 | RBH | 0.073553 | 0.985639 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007860 | RBH | 2.527138 | 8.739504 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008560 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008030 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008260 | RBH | 0.000000 | 0.296771 | 0.646885 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008120 | RBH | 0.366557 | 4.798977 | 1.706067 |
