Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0005360 | OGI:01039680 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:4929999-4932025 | ||||||||
| Gene Symbol | MSL29, OsMSL29 | ||||||||||
| DNA seq | ttagctcccagtatatacctcccaggatatcTtctcagaagatatcttttcctgtctgtCcaatagtttcatgcgcttgtcaTtgttttcctcctggaatttgctatatctAtcAaatttgtcgaactgaataggagactcctttgagtgaccatcatcactactgcccgAaccatttgacttgatttttgcatctagagctgcctttttagcagccttctgaCccattggtcgctttggcatctcatcaaaagtgtcatcagcttcctcagagtctccttccaagtgaaatgatttccttttacgtgcattcctcaggttttcattgcatgttttccactttgacacttctcggtatattttccaaacctccatcagcacaaagggtcctagctttgcttctttattgtcatccacataaaacttgtgtgctgcatcaatccacatttgattagaatatccacttgtaaaaactctatgagcctttacataagcacactcaaagagatccgtccaccTAataatcttgtgacatctatccttgcaatgcttcagatttcTttttctgagaggtggggtagtcttgttgtatgattcaacaacttcaccccaatattggccacctcccttatctgctccacatgtagagtcagttgaatgctctatccaagcactcatcaatctaatAtctcttcctctgtccacagtatcctcttctcagtcctaacattgccattAccatttccatcatcattgccttgtAaaatttccacctctggtggtgaactagcatcagcaatgtaaataggcgcaccaaccaaatGagagttttgtgcatgatttccAaaatagctcatgataccaccacgtggatgtacatctttatccctgcaGgataatagcatatatttgatgcaaatAaattggataatatcttagattacagggataatatcttatatcacaggataatagcggatatttgagtttggctcgcttttgcagattatctcatggcagctagttcatttcagttacagggttctagctaactactgtgaccatataacaaaggaagggattactgacattacTaatcaggtagtataaacagagtaacatctagagatagcttcatccaatccacaagcaattcataatatAaacaaccatctgatttttatttctctcAaaagttgaatataacctcaatatcattaggataacgtgctacatgaTgcaaaaaattctagagtcaagtaattaaattgtagaatgccttttccaataagtactaagttaccagttataaacatttgagtaaactgtgaatggttaagttgcagaatgcagagAagctcatcacacttgaaaaccaaactGgaaaactgctctacattacaacattgaaacgagcataccTtctcatgacccatggcaggggatgtacAataaagcctgatttttatgactaagtaacactgaaattagttctaacatagaacatagtaggcattcagatgggaaaaaaacaagcatattctatgttctcgtgatgtaaggggcAatttttaaCccacaagaatcattagcagttcatgaatcacacatccacaacgaaacaaatcAcacaagcatattctgctggaacagagaacaagaatcaaagattaccAcgatccaggagaagattcatcaccaccggacgcatccaaccaagctgAagagctggggaatccaccttcgtaggatccatcaaaaggtggagggaagggaaatccatccatggatgctgaataactggggaagccgcctggagggattgctgccgctgctggcccgccaccgcggccgagagagcggggcggcggcgctaacccgacatcgtggccgccacgactgaaggggagagccgtcgtcaccgacccaacaccacgacctagggtacgggctggggctgccgccgccgcatccgaggcctcatgtgtgcctcccttcttcttcctacctgcagccgccgtggacat
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| CDS seq | atgtccacggcggctgcaggtaggaagaagaagggaggcacacatgaggcctcggatgcggcggcggcagccccagcccgtaccctaggtcgtggtgttgggtcggtgacgacggctctccccttcagtcgtggcggccacgatgtcgggttagcgccgccgccccgctctctcggccgcggtggcgggccagcagcggcagcaatccctccaggcggcttccccagttattcagcatccatggatggatttcccttccctccaccttttgatggatcctacgaaggtggattccccagctctTcagcttggttggatgcgtccggtggtgatgaatcttctcctggatcgTgggataaagatgtacatccacgtggtggtatcatgagctatttTggaaatcatgcacaaaactctCatttggttggtgcgcctatttacattgctgatgctagttcaccaccagaggtggaaatttTacaaggcaatgatgatggaaatgataagggaggtggccaatattggggtgaagttgttgaatcatacaacaagactaccccacctctcagaaaaAgaaatctgaagcattgcaaggatagatgtcacaagattatTAggtggacggatctctttgagtgtgcttatgtaaaggctcatagagtttttacaagtggatattctaatcaaatgtggattgatgcagcacacaagttttatgtggatgacaataaagaagcaaagctaggaccctttgtgctgatggaggtttggaaaatataccgagaagtgtcaaagtggaaaacatgcaatgaaaacctgaggaatgcacgtaaaaggaaatcatttcacttggaaggagactctgaggaagctgatgacacttttgatgagatgccaaagcgaccaatggGtcagaaggctgctaaaaaggcagctctagatgcaaaaatcaagtcaaatggtTcgggcagtagtgatgatggtcactcaaaggagtctcctattcagttcgacaaattTgaTagatatagcaaattccaggaggaaaacaAtgacaagcgcatgaaactattgGacagacaggaaaagatatcttctgagaAgatatcctgggaggtatatactgggagctaa
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| Protein seq | MSTAAAGRKKKGGTHEASDAAAAAPARTLGRGVGSVTTALPFSRGGHDVGLAPPPRSLGRGGGPAAAAIPPGGFPSYSASMDGFPFPPPFDGSYEGGFPSSSAWLDASGGDESSPGSWDKDVHPRGGIMSYFGNHAQNSHLVGAPIYIADASSPPEVEILQGNDDGNDKGGGQYWGEVVESYNKTTPPLRKRNLKHCKDRCHKIIRWTDLFECAYVKAHRVFTSGYSNQMWIDAAHKFYVDDNKEAKLGPFVLMEVWKIYREVSKWKTCNENLRNARKRKSFHLEGDSEEADDTFDEMPKRPMGQKAAKKAALDAKIKSNGSGSSDDGHSKESPIQFDKFDRYSKFQEENNDKRMKLLDRQEKISSEKISWEVYTGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0005360 | OsLaMu_08g0005360.01 | Chr08 | 4929999 | 4932025 | - | NAM | ||
| CDS seq | atgtccacggcggctgcaggtaggaagaagaagggaggcacacatgaggcctcggatgcggcggcggcagccccagcccgtaccctaggtcgtggtgttgggtcggtgacgacggctctccccttcagtcgtggcggccacgatgtcgggttagcgccgccgccccgctctctcggccgcggtggcgggccagcagcggcagcaatccctccaggcggcttccccagttattcagcatccatggatggatttcccttccctccaccttttgatggatcctacgaaggtggattccccagctctTcagcttggttggatgcgtccggtggtgatgaatcttctcctggatcgTgggataaagatgtacatccacgtggtggtatcatgagctatttTggaaatcatgcacaaaactctCatttggttggtgcgcctatttacattgctgatgctagttcaccaccagaggtggaaatttTacaaggcaatgatgatggaaatgataagggaggtggccaatattggggtgaagttgttgaatcatacaacaagactaccccacctctcagaaaaAgaaatctgaagcattgcaaggatagatgtcacaagattatTAggtggacggatctctttgagtgtgcttatgtaaaggctcatagagtttttacaagtggatattctaatcaaatgtggattgatgcagcacacaagttttatgtggatgacaataaagaagcaaagctaggaccctttgtgctgatggaggtttggaaaatataccgagaagtgtcaaagtggaaaacatgcaatgaaaacctgaggaatgcacgtaaaaggaaatcatttcacttggaaggagactctgaggaagctgatgacacttttgatgagatgccaaagcgaccaatggGtcagaaggctgctaaaaaggcagctctagatgcaaaaatcaagtcaaatggtTcgggcagtagtgatgatggtcactcaaaggagtctcctattcagttcgacaaattTgaTagatatagcaaattccaggaggaaaacaAtgacaagcgcatgaaactattgGacagacaggaaaagatatcttctgagaAgatatcctgggaggtatatactgggagctaa
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| Protein seq | MSTAAAGRKKKGGTHEASDAAAAAPARTLGRGVGSVTTALPFSRGGHDVGLAPPPRSLGRGGGPAAAAIPPGGFPSYSASMDGFPFPPPFDGSYEGGFPSSSAWLDASGGDESSPGSWDKDVHPRGGIMSYFGNHAQNSHLVGAPIYIADASSPPEVEILQGNDDGNDKGGGQYWGEVVESYNKTTPPLRKRNLKHCKDRCHKIIRWTDLFECAYVKAHRVFTSGYSNQMWIDAAHKFYVDDNKEAKLGPFVLMEVWKIYREVSKWKTCNENLRNARKRKSFHLEGDSEEADDTFDEMPKRPMGQKAAKKAALDAKIKSNGSGSSDDGHSKESPIQFDKFDRYSKFQEENNDKRMKLLDRQEKISSEKISWEVYTGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0178900 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g08130 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0178900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005380 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007320 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005440 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007340 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0355700 | SBH | 0.009688 | 0.0172445 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0101200 | SBH | 0 | 0 | 0.01697 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013320 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007170 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014340 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013540 | RBH | 0.0 | 0.0 | 0.0 |
