Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0010310 | OGI:07030420 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:10989321-10995022 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttgccgtcgaccttcccgtacttcatactcgtcgcgctggaggtcgggggactcttccgtggacttctgctgctgctgctgtacagcctctaccccgtgctgctcctgctcggccatggccgggcgaccaagctcatggtcatggtgagctttgccgacgtcaggaaggaggatgggtcgtcgtcgttcagggtgggcagcgcggtgatgcccaagctgttcctggaagacgtcagcgctgaggtcctcaatcgaggcggcggcgcagcggggatagagataagagatggaagatatgacatatgggcccaagggtattttagaactttcatgccatttctctctcctcttcaaccgaaaattattattttaatcagcacgatgtctattgccaaattaccacgtttatagaatgttttcctctaaaagtgagttcgggcagtgccctacggctaaaaccacgaaattacagtatcctgtagcaaaatttgcctttattattagtgtgggcatggtagatcgtagctactatgcaggaagcaacccaatactgctcgtattgtggccagggtttacgattccaacaaaatccggtcggatttcgcaaaatttcgacattccgacgaggctcgaaagtagaaaccgtatgagatttcgaggagtttcatccaaattcaaatttgaaatgataaaaaaaagaaaaaaacaaataaaatcttataaatactatgatattcatagaacatattgggatataaatattctAaaaaaaatgatgtattatgtgtatttactaaaacttacatcagaaaagaaaagaataaagaattAaaaaaaagaaaacacttacatgggctgaattgcatgtactaggcccagttagtagttggtccaaattacaggttacagatcgaaatttcgatcagaatttcgccaaaaccgacaggttttcgagaacttgtcaacaaactcagggaatttgcattcaaattttggtttatgaaatttgttcggaatttaccggttttccaccggatttcgcgaaattccgaattccgctagtgcccgaaatggaagggcctgtcggaatcgtaaaccctgattgtggcggcggctgaggcggtaaggcctaggcatatagccgccacctagctcatatgcttgattgaattgattttttttagaactgattgaatttattctatccttgctttctgcatctccactcaaacgaagctctgaagtctgaatgagtagcatgatattgaacctgtcaattcgatatgggcttttcttattgaataatctagagtgttgtaggcctgtgatcttgtgtgggcttctagtgttctagccatggaaatcacgtaagcaggtagttttcgtacgaatttcgtacagatttcttcgtgtgtatatagcaaggttcaattcaaattattgaaacagagtcatatagcgaaatgaccaaaacaaaagttgtatatatttattatttatacaactttgttgttgatgactttttcagttaaaattatttagtatttgaaaatgttgtttgaaatttgtcataatttgaaattcaaatttcatataggtcaattaaactcagatggagaaataaccgaaataaaattggtagatctcaataagttatacaactttgtttttgacaagtttttcacatatgttcatttagtatgctaaaatttcgaaggtttaatattttgaatttaaatgaaaggaggaaggtaaaatggacttctcggcaagggatgagcaaaagggctggcccgtaacaggccttttgctcctccctcgccaataagtctattttgtctccgtccttctattaatttcaaaacattaaaccttcaaatcgaattttatcatactaaatgaacttatgtaaaaaagttctcaaaaacaaagttgtataacttattgagatcttcctattttattttggttatttctccatctgagtttgattgacctatataaaatttgaattttaaattatgataacttcaaataatatttttaaatactaaatgattttaactaaaaaggtcattaacaacaaagttgtataactcaccaatatatacaacttttgttttggccaTttttctatatgaatttgtttaaatagtttgaatttgaatttcaaattatgacagcttcaaacaatatttacaagtactagatgatttcaactgaaaaagtcatcaacaacaaatttgtattactcatcaatatctataacttttgttttggctatttttctatacgactttgtttaaacaatttaaatttgaatttcaaattatgatagcttcaaacaacatttacaagtactagatgatttcaactgaaatcaacaacaatgttgtataactcatcaagatctataacttttatttgggtcaTtttttcattcgtcgaagtgatttgtaacattgttcacaaaatgtacatatctcttatacgtttataaaaaataagagagatatgtagattttgtgaacaatgttacaaatcacttcgtcggatgaagaaatgatcaaaataaaagttatatatattgatgagttatacaactttgttattattgatgactttttgagttgaaatcatttagtatttgtaaattttgtttgaagttgtcataatttgaaattcaaattcgaaccgttgaaacaaagtcatatagaaaaatgaccaaaataaaagttataggtattgatgagttatataactttgttgttgatgatcttttcatttgagatcatttagtttttgaaaatattgtttgaagttgtcataatttgaaattcaaattttatatagaccaatgaaactcagatggagaaataaccaaaataaaattggtagatctcaataagttatacaactttgtttcaaacaactttttcacataagttcatttagtatgataaaattcgatttgaagtttcaaaattttgaaatttccaggttaaatgaccattttatccaagtaacttgtataataggtttccagataccagggttattctggtaaaatcgcatcaacatagcttcttatacatatatccaaaccctagccatccattcttcaccttctctttccccaccctcacaccgccgcccaccacgccatcgttgtcgtcctcctcccttcgcccaccatccacagccccctcggatctcgccgccccttccgcctccccctccgctcctctcgccgctcctccgtccccccccctcttcggcaatctcgccggcgtcccaactccggtgggagtggcggcggcagcaaggaggcgcggcggcaacgacctgcggtggtggatccggcggcgccgtcctagggaaggccggatccgccaccctaggaaggagctcggctctcggcggcgggcggtgggcacggtgacagcctgctccggcggatctggcggcgtcggcgcagaggcggaggacagcgatgcgccagagacggagggcccgtcgggcaggccggcagcgaggcggtggcggagccgcggaggcgggccggcgtggatggggtcggtggaggtggcggcgacctggtacggtggcgggagggagtcaatgcgagggggttcaggcaagggagtcaatgcgagggggttcaggcgaggctggcggcgtggctcgcaccgtggcggctcctctcctccggcggcaaggtgctcggcgaagaggagaaggctgccgagaacatctacatcaaggtatatccaccctactcgcttccctaatcttccttccccctcgtgattgttgctgttcttgctgcgatagatgggctacagatgcaactagagatgtattgcttgagctcttcataattcatcaacacttcatgactgttgaaactgaattgcatctatacgttataagtactactcctaacctgtagaattatcaatctatggcaatcaacctcaatgaattatcatctgacctgcaagcagaatgagaaaccaatatactatcatatagctgtaagacatgatcttttgaacaagagacttgcattatgtagtgttttatttatccatcacttgagcagttttcacaattcctatatatcgaatggtaaactctacttcaccgtactttcagaaaatatgaaatatataaatgttaacagtaagatgaaatcaaaagtactaatctccaatagtccatatatatctggatcatatccacctgaaataaaagattaccacttttttatgtactgcaatttgtaattagcaattaaacatgtgcatgctgcaaaaatattctacaaaaacaggactagccatctttccttttccttttaacaaacagtaatagcaaactatcagtaaacagagaacatctacatcaaggtatatccaccctactcgcttccctaatcttccttccccctcgtgatgttgctgttcttgctgcggtagatgggctacagatgcaactagagatgtattggtgtgctgtgtagaggttttggatgtgctccaaattgaaatgaggctgtttttcctgtgcgaattgctgagtttgcttcaactttcatccttcccatggtcacttttggtgagttcctatgagtcccatggtcacctttttttagaaagtaataagtgaaatcctattatgaatgtcaaatctgatgatttcttttatcttattcatgtaaaaaggattggttgtcaccatatgtggtgctcatatgtggtgctcaggaatgtcaaaactgtaggggcatgtttcttcctaacatgtgaagtggtttttttggctatctagcaaacttgtggctgtgctttctcatgttatactatgctaagcagttgcattgcagtttaagatgtctcagtttatacccaatttttggaaatttgtgagcatgatgtcagtcttttccttttaaattaagggataacatgaagaaaccagggctggcagttctttttgtttaccaatttttccactgtacaagtgcaaaagcatttcagtatcttttcagagttcacgaaagaactgggctatttatttggtagcaggacaggaagtagggttgtttttttcacctataactgttactttagtaaggaaatttgagggtgcctctccctcatgcgtgaaaaccattatttccacagtgaaaaggggtaaATatatatatattgttttgcctgatctctgagcatgcttagtttctttgttacaaaatgctgaactgagatgaactgaaaatttcagaaatgtgcgatgtgcaggtggagataacatacagagggagacagctcctcccgatcctgacattgcagcatgtccgtgacatcagtaactgcatgaatattttttattcatctattaactgcttgaacagtagaagaaactaggatgatatggcagttattgatgttttatcttgtgcatatgcagtgctgctaagctcacttggaagatcttggtcatgcgacatccggtgaaattttggttactgtgattgtatttggaatgtgactagatttggctgttaactgtgttgtaaattttgtgttgtattggatgtttgtcgagttgtgttggtttgaatctgagattgtatgataaattggattgaatttggtgggctcaaatttaatgggtctgtgatctgatagttg
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| CDS seq | atgttgccgtcgaccttcccgtacttcatactcgtcgcgctggaggtcgggggactcttccgtggacttctgctgctgctgctgtacagcctctaccccgtgctgctcctgctcggccatggccgggcgaccaagctcatggtcatggtgagctttgccgacgtcaggaaggaggatgggtcgtcgtcgttcagggccggcagcgaggcggtggcggagccgcggaggcgggccggcgtggatggggtcggtggaggtggcggcgacctggtacggtggcgggagggagtcaatgcgagggggttcaggcaagggagtcaatgcgagggggttcaggcgaggctggcggcgtggctcgcaccgtggcggctcctctcctccggcggcaaggtgctcggcgaagaggagaaggctgccgagaacatctacatcaagaaatgtgcgatgtgcaggtggagataa
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| Protein seq | MLPSTFPYFILVALEVGGLFRGLLLLLLYSLYPVLLLLGHGRATKLMVMVSFADVRKEDGSSSFRAGSEAVAEPRRRAGVDGVGGGGGDLVRWREGVNARGFRQGSQCEGVQARLAAWLAPWRLLSSGGKVLGEEEKAAENIYIKKCAMCRWR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0010310 | OsLaMu_07g0010310.01 | Chr07 | 10989321 | 10995022 | + | NAM | ||
| CDS seq | atgttgccgtcgaccttcccgtacttcatactcgtcgcgctggaggtcgggggactcttccgtggacttctgctgctgctgctgtacagcctctaccccgtgctgctcctgctcggccatggccgggcgaccaagctcatggtcatggtgagctttgccgacgtcaggaaggaggatgggtcgtcgtcgttcagggccggcagcgaggcggtggcggagccgcggaggcgggccggcgtggatggggtcggtggaggtggcggcgacctggtacggtggcgggagggagtcaatgcgagggggttcaggcaagggagtcaatgcgagggggttcaggcgaggctggcggcgtggctcgcaccgtggcggctcctctcctccggcggcaaggtgctcggcgaagaggagaaggctgccgagaacatctacatcaagaaatgtgcgatgtgcaggtggagataa
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| Protein seq | MLPSTFPYFILVALEVGGLFRGLLLLLLYSLYPVLLLLGHGRATKLMVMVSFADVRKEDGSSSFRAGSEAVAEPRRRAGVDGVGGGGGDLVRWREGVNARGFRQGSQCEGVQARLAAWLAPWRLLSSGGKVLGEEEKAAENIYIKKCAMCRWR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0010310 | OsLaMu_07g0010310.02 | Chr07 | 10992440 | 10994992 | + | IsoSeq | ||
| CDS seq | tcttcaccttctctttccccaccctcacaccgccgcccaccacgccatcgttgtcgtcctcctcccttcgcccaccatccacagccccctcggatctcgccgccccttccgcctccccctccgctcctctcgccgctcctccgtccccccccctcttcggcaatctcgccggcgtcccaactccggtgggagtggcggcggcagcaaggaggcgcggcggcaacgacctgcggtggtggatccggcggcgccgtcctagggaaggccggatccgccaccctaggaaggagctcggctctcggcggcgggcggtgggca
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| Protein seq | SSPSLSPPSHRRPPRHRCRPPPFAHHPQPPRISPPLPPPPPLLSPLLRPPPSSAISPASQLRWEWRRQQGGAAATTCGGGSGGAVLGKAGSATLGRSSALGGGRWA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.687324 | 8.758495 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010310 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0185500 | RBH | 7.9152015 | 6.4921375 | 11.705655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010440 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010270 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010070 | RBH | 7.741456 | 58.051594 | 20.833879 |
